BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495890
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr... 1454 0.0
> AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5:23449711-23450933
REVERSE LENGTH=1126
Length=1126
Score = 1454 bits (787), Expect = 0.0
Identities = 875/919 (95%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 1 AAAACTAGAATCTTCATGGAGGAAGACGGGTCTGATTGGGGCGGATTGGCTCCAGAGATA 60
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAAACAAGAATCTTTATGGAAGAAGACGGGTCTGATTGGGGCGGATTGGCTCCAGAGATA 63
Query 61 CTCATCAACATCATCTCAAGGCTCACGATTCAGGAGCTATGGACGGGTCCGATGTTCGTC 120
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 64 CTCATCAACATCATTTCAAGGCTTACGATTCAGGAGCTATGGACCGGTCCGATGTTCGTC 123
Query 121 CGAAAATCGTGGCTAACTGTTTGCAGAGATCCGTATCTCTGGTCTATCTTCGATCTGGAA 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CAAAAATCGTGGCTAACTGTTTGCAGAGATCCGTATCTCTGGTCTATCTTCGATCTGGAG 183
Query 181 CCATGGTTCGAGTCATATCCCGAGTCGACTCACTTGTGGTCCCCTGATTTCGAGGGGAAG 240
||||||||||| || |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 184 CCATGGTTCGATTCCTATCCCGAGTCGACTCACTTGTGGTCCCCTGAGTTCGAGCAGAAG 243
Query 241 GTAGACTCAATGCTCCGATCAGTCGTTGATTGGAGCGATGGTGGTCTAACCGAGATCCGC 300
||||||| |||||| ||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 244 GTAGACTTAATGCTACGATCAGTCGTTGATTGGAGCGAAGGTGGTCTCACTAAGATCCGC 303
Query 301 GTCCGCCATTGCAGCGACCACGCTCTCTCTTACGCAGCCGATAGATGCCCAAATCTACAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 304 GTCCGCCATTGCAGCGACCACGCTCTCTCTTACGCAGCCGATAGATGCCCGAATCTACAG 363
Query 361 GTTCTTGCCGTTAGAAGCAGTCCAAACGTGACAGACGCATCTATGACGAAGATAGCGTTT 420
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 364 GTTCTTGCCATTAGAAGCAGTCCTAACGTGACAGACGCATCGATGACGAAGATAGCGTTT 423
Query 421 CGGTGCAGGAGTCTAAAGGAACTTGATATCAGTTACTGTCACGAGATATCTCACGACACT 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CGGTGCAGGAGTTTAAAGGAACTTGATATCAGTTACTGTCACGAGATATCTCACGACACT 483
Query 481 CTTGTGATGATTGGTAGAAACTGTCCTAATCTGAGGATCTTGCAACGTAACCTTATGGAC 540
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 484 CTTGTGATGATTGGTAGAAACTGTCCTAATCTGAGGATCTTGAAACGTAATCTTATGGAT 543
Query 541 TGGTCTTCTCGGCACATTGGCTCTGTTCCTACAGAGTACTTAGACGCTTGTCCTCAAGAC 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 544 TGGTCTTCTCGGCACATTGGCTCTGTTCCTACAGAATACTTAGACGCTTGTCCTCAAGAC 603
Query 601 GGAGACACAGAAGCTGATGCGGTTGGGAAACATATGATCAATCTAGAGCGTTTGGAGATT 660
||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 604 GGAGACACAGAAGCTGACGCGATTGGGAAACATATGATCAATCTAGAGCATTTGGAGATT 663
Query 661 CAGTTCTCTAGATTATCTGTCAAGGGTCTTGCTTCTATATGTGAGGGTTGTCCCAAGCTA 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 664 CAGTTCTCTAGATTATCTGTCAAGGGTCTTGCTTCGATATGTGAGGGTTGTCCCAAGCTA 723
Query 721 GAGTACTTGGACTTGTTTGGCTGTGTGCATTTGTCAAGCCGTGACATTACAAGCAATGTT 780
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 724 GAGTACTTGGACTTGTTTGGGTGTGTGCATTTGTCAAGCCGTGACATTACAAGCAACGTG 783
Query 781 TCAAGGCTTAAATGGCTTAAGGAGGTGAAGAAGCCAGATGTTTATGTGCCAAGGTCAGGA 840
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 784 TCAAGGCTTAAATGGCTTAAGGAGGTAAAGAAGCCAGATGTGTATGTGCCAAGGTCAGGG 843
Query 841 GATGTGGCTCAAACAGAGAGGTATGGACATTGGAGACTCTATGATGAGAGATTTGATATA 900
|||||||| || || ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 844 GATGTGGCGCAGACGGAGAGGTATGGACATTGGAGACTCTATGACGAGAGATTTGACATA 903
Query 901 CAAGCCATGAGGATCTGAT 919
||||||||||| |||||||
Sbjct 904 CAAGCCATGAGAATCTGAT 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5