BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495891
Length=467
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06555.1 | Symbols: | unknown protein; Has 30201 Blast hits... 366 9e-101
> AT2G06555.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:2604148-2604927
REVERSE LENGTH=622
Length=622
Score = 366 bits (198), Expect = 9e-101
Identities = 365/440 (83%), Gaps = 34/440 (8%)
Strand=Plus/Plus
Query 1 TGTTATGAGTTTGCCTCTCGGACTCCTCGCAGTGGAGAGACTGAAGATGACATTCTTGTG 60
|||||||||||||||| ||||||||||||||| ||||||||| || |||||||||| |||
Sbjct 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151
Query 61 CTGGCCTACAAGCTTTACCATCAGGATCAAAAAACCAAATTCAGTCTTGAGCATGTTTGG 120
|| |||||||||||||||||||| |||| |||| ||| || || ||| || |
Sbjct 152 CTTGCCTACAAGCTTTACCATCAAGATC--AAAA--AAA--CA-AATT---CATCCTT-G 200
Query 121 AGAATCCTCAAGACTGATCAGAAGTGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAAG 180
|| || | || |||| | | ||| | | || |||| || ||||||||
Sbjct 201 AG------CATGTTTG--GAGAA-TCCT-CAA---GACT--GATCAAAGTTTCTGCCAAG 245
Query 181 AAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTCCAAAGGCCTATAGGTGTGAAG 240
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 246 AAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAG 305
Query 241 GCAGCCAAGGCTTTAGCCAAGTCTAAAGTGAAAGAGAAGGATTTGGCTTTCAAAGAGAGA 300
||||||||||||| ||||||||| | ||||||||||||||| || |||||||||||
Sbjct 306 GCAGCCAAGGCTTCAGCCAAGTC---A---AAAGAGAAGGATTTGACTGTCAAAGAGAGA 359
Query 301 CTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGTGAGAT 359
|||||||| || ||||||||||||||||| ||| | |||||| ||||||||||||| ||
Sbjct 360 CTCTCCAAACATAAGCTACTTGACAGCCTACTT-AATAGGTCTAATGGATTGAGTGATAT 418
Query 360 GGAAATTGAACTTAAGAACACTCTTATCAAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 419
||||||| || |||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 419 GGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 478
Query 420 TTCTGAGAATGAATATTCTG 439
||||||||||||||||||||
Sbjct 479 TTCTGAGAATGAATATTCTG 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22203492974
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5