BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495894
Length=2454
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57940.1 | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated... 3770 0.0
> AT5G57940.1 | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated
channel 5 | chr5:23456667-23460613 FORWARD LENGTH=2659
Length=2659
Score = 3770 bits (2041), Expect = 0.0
Identities = 2261/2367 (96%), Gaps = 15/2367 (1%)
Strand=Plus/Plus
Query 96 TTGCTTCATGATTAGAGTCTGTTAAAGCTGTGTTCTTTCTTCATCGATTTGAGCAATTGA 155
|||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 233 TTGCTTAATGATTAGAGTC--TTAAAGCTGTGCTCTTTCTTCATCGATTTGAGCAAGTGA 290
Query 156 TCGTGGAAGGCTCTTGAGTTCCT-TA-T--TAG-CAGCAATCATGGCAGGCAAACGAGAC 210
|| ||||||||||||||||| || | | | | ||||||||||||||| ||| ||||
Sbjct 291 TCTTGGAAGGCTCTTGAGTT-CTGAATTCCTTGTAAGCAATCATGGCAGGGAAAAGAGAA 349
Query 211 AATTTTATGAGGGTGGATGATTTGGACTCTAGGTTACCATCATCATCTGTAACCTTCCAA 270
|| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 350 AACTTTGTGAGGGTGGATGATTTGGACTCTAGGTTACCATCATCATCTGTAGCCTTCCAA 409
Query 271 CAGAACTACGCCTCCAATTTCAGTGGACAACTTCATCCTATTCATG-GAGCCAATGACAC 329
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 410 CAGAACTACGCCTCCAATTTCAGTGGACAACTTCATCCTATTCATGCAAG-CAATGAAAC 468
Query 330 ATCTAGATCATTCAAGAAAGGGATCCAAAAGGGTTCCAAAGGGCTTAAATCGATAGGCCG 389
|||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| || ||
Sbjct 469 TTCTAGATCCTTCAAGAAAGGTATCCAGAAGGGTTCCAAAGGGCTTAAGTCGATCGGACG 528
Query 390 TTCACTCGGTTTCGGTGTTTATAGAGCAGTGTTCCCAGAAGACCTTAAAGTATCTGAAAA 449
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 529 TTCACTTGGTTTCGGTGTTTATCGAGCAGTGTTCCCAGAAGACCTTAAAGTATCTGAAAA 588
Query 450 GAAGATATTTGATCCTCAGGACAAAATCCTTTTGTATTGCAATAAGTTATTCGTCGCCTC 509
||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||
Sbjct 589 GAAGATATTTGATCCTCAGGATAAATTCCTTTTGTATTGCAATAAATTATTCGTTGCGTC 648
Query 510 ATGTATTCTTTCAGTGTTTGTGGACCCtttttttttCTATCTTCCTGTGATTAATGCTGA 569
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 649 ATGTATTCTTTCAGTGTTTGTGGACCCTTTTTTCTTCTATCTTCCTGTGATTAATGCTGA 708
Query 570 GTCCAAGTGCCTGGGTATTGACAGAAAACTGGCTATCACAGCAAGTACATTGCGGACTTT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GTCCAAGTGCCTGGGTATTGACAGAAAACTGGCTATCACAGCAAGTACATTGCGGACTTT 768
Query 630 TATCGATGTGTTTTATCTAGCTCACATGGCTCTCCAGCTCAGGACTGCTTATATTGCACC 689
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 769 TATCGATGTGTTTTATCTCGCTCACATGGCTCTCCAGCTTAGGACTGCTTATATTGCACC 828
Query 690 TTCATCACGGGTCTTTGGGCGAGGTGAACTCGTGATTGATCCTGCGCAGATAGCAAAGAG 749
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 829 TTCATCACGGGTCTTTGGGCGAGGTGAACTCGTGATTGATCCTGCACAGATAGCAAAGAG 888
Query 750 ATATTTACAGCGTTGGTTTATCATTGATTTTCTCTCAGTACTTCCTGC-CCCTCAGATTG 808
|||| |||| ||||||||||| ||||| |||||||||||||||||| | |||||||||||
Sbjct 889 ATATCTACAACGTTGGTTTATTATTGACTTTCTCTCAGTACTTCCT-CTCCCTCAGATTG 947
Query 809 TAGTTTGGAGGTTCTTGCAAAGCTCAAACGGATCGGATGTATTGGATACAAAGCAGGCCT 868
|||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||
Sbjct 948 TAGTTTGGAGGTTCTTGCAAAGTTCAAATGGGTCGGATGTATTGGCTACAAAGCAGGCCT 1007
Query 869 TGCTTTTCATTGTTTTGGTCCAGTATATACCGCGATTCCTACGTGTCTTACCCTTGACGT 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TGCTTTTCATTGTTTTGGTCCAGTATATACCGCGATTCCTACGTGTCTTACCCTTGACGT 1067
Query 929 CAGAATTGAAAAGGACAGCAGGTGTCTTTGCGGAAACTGCTTGGGCTGGTGCCGCTTATT 988
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1068 CAGAATTGAAAAGGACAGCAGGTGTCTTTGCTGAAACGGCTTGGGCTGGTGCCGCTTATT 1127
Query 989 ATCTGCTCTTATATATGCTTGCAAGTCATATAGTTGGAGCTTTTTGGTACCTTTTAGCCT 1048
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 ATCTGCTTTTATATATGCTTGCAAGTCATATAGTTGGAGCTTTTTGGTACCTTTTAGCCT 1187
Query 1049 TGGAACGTAACGACGCCTGCTGGCAGGAGGCCTGTA-ACCATGCAGGGAATTGCAGCACA 1107
| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1188 TAGAACGTAACGACGCCTGCTGGCAGGAGGCCTGTATA-GATGCAGGGAATTGCAGCACA 1246
Query 1108 GATTTCTTGTACTGTGGCAATCAAAACATGGACGGCTATGCTGTTTGGAACAGAACCAAG 1167
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1247 GATTTCTTGTACTGTGGCAATCAAAACATGGACGGCTATGCTGTTTGGAACAGAGCCAAG 1306
Query 1168 GAATCTGTTCTTCAGTCCAAGTGCCGAGCTGACCTCGATGATAATAATCCTCCATTTGAC 1227
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GAATCTGTTCTTAAGTCCAAGTGCCGAGCTGACCTCGATGATAATAATCCTCCATTTGAC 1366
Query 1228 TTTGGGATTTATACACAGGCTTTATCGTCTGGAATTGTCTCGTCTCAAAACTTCATCGTA 1287
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1367 TTTGGGATTTATACACAGGCTTTATCGTCTGGAATTGTCTCGTCCCAAAACTTCATCGTA 1426
Query 1288 AAATATTGTTATTGTTTGTGGTGGGGCCTTCAGAACTTGAGTACACTTGGACAAGGGCTT 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AAATATTGTTATTGTTTGTGGTGGGGCCTTCAGAACTTGAGTACACTTGGACAAGGGCTT 1486
Query 1348 GAAACCAGTACATACCCAATGGAAATTATATTTTCCATAGCGCTCGCCATTTCTGGGTTG 1407
||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 1487 GAAACCAGTACATACCCAATGGAGATTATATTTTCCATATCTCTCGCCATTTCTGGGTTG 1546
Query 1408 ATCCTCTTTGCTCTTCTCATCGGAAACATGCAGACATATCTCCAATCTCTTACCATCCGG 1467
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1547 ATCCTCTTTGCTCTTCTCATTGGAAACATGCAGACATATCTCCAATCTCTTACCATCCGG 1606
Query 1468 CTCGAAGAAATGAGAGTAAAGAGGCGTGACTCAGAACAATGGATGCATCACAGAATGTTA 1527
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1607 CTTGAAGAAATGAGAGTAAAGAGGCGTGATTCAGAACAATGGATGCATCACAGAATGTTA 1666
Query 1528 CCACAAGATCTTAGGGAGCGTGTGAGGCGCTATGACCAGTATAAATGGTTGGAGACACGT 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 CCACAAGATCTTAGGGAGCGTGTGAGGCGCTATGACCAGTATAAATGGTTGGAGACACGT 1726
Query 1588 GGTGTAGATGAAGAGTATCTCGTTCAGAATCTCCCCAAGGATCTCCGGAGAGACATCAAG 1647
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1727 GGTGTAGATGAAGAGTATCTCGTTCAGAATCTTCCCAAGGATCTCCGGAGAGACATCAAG 1786
Query 1648 CGGCATCTTTGTCTGGCTTTAGTGCGCAGGGTTCCATTGTTTGAGAGCATGGACGACAAG 1707
|||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1787 CGGCATCTCTGTCTGGCTTTAGTGCGAAGGGTTCCATTGTTTAAGAGCATGGACGACAAG 1846
Query 1708 CTGCTGGATGCGATCTGTATGCGACTAAAACCATGCTTGTTCACAGAGAGTACCTACTTA 1767
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1847 CTGCTGGATGCGATCTGTATGCGGCTGAAACCATGCTTGTTCACAGAGAGTACCTACTTA 1906
Query 1768 GTACGGGAAGGAGACCCTGTAGACGAGATGCTATTCATAATACGTGGTCGCCTCGAGAGT 1827
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 GTGCGGGAAGGAGATCCTGTAGACGAGATGCTATTCATAATACGTGGTCGCCTCGAGAGT 1966
Query 1828 GTGACAACAGATGGAGGCAGGAGCGGTTTCTTCAACCGCAGTCTCCTTAAAGAAGGAGAA 1887
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1967 GTGACAACAGATGGAGGCAGGAGCGGTTTCTTCAACCGCAGTCTCCTGAAAGAAGGAGAA 2026
Query 1888 TTCTGTGGGGAAGAGCTTCTGACATGGGCATTGGATCCAAAATCAGGTGTAAATCTCCCG 1947
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 TTCTGCGGGGAAGAGCTTCTGACATGGGCATTGGATCCAAAATCAGGTGTAAATCTCCCG 2086
Query 1948 TCTTCCACGAGAACCGTGAAAGCTCTGACAGAAGTAGAGGCGTTTGCGCTGACCTCCGAG 2007
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2087 TCTTCCACGAGGACCGTGAAAGCTCTGACAGAAGTAGAGGCGTTTGCGCTGACCTCAGAG 2146
Query 2008 GAGCTGAAGTTTGTTGCAAGCCAGTTTCGGCGCCTACATAGCAGGCAAGTGCAGCACACA 2067
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 2147 GAGCTGAAGTTTGTAGCAAGCCAGTTCCGGCGCTTACATAGCAGGCAAGTGCAGCACACA 2206
Query 2068 TTCAGATTTTACTCTCACCAGTGGAGGACTTGGGCAGCTTGTTTCATCCAGGCTGCCTGG 2127
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2207 TTCAGGTTTTACTCTCACCAATGGAGGACTTGGGCTGCTTGTTTCATCCAGGCTGCCTGG 2266
Query 2128 CGTAGATACTGCAAGAGGAAGAAGATGGAAGAGGCCGAAGCCGAGGCCGTGGCTGTGCCC 2187
||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||
Sbjct 2267 CGTAGATACTGCAAGAGGAAGAAAATGGAAGAGGCAGAAGCCGAGGCCGCGGCTGTGTCC 2326
Query 2188 AGCTCAACCGCTGGACCTTCATACTCCATCGGGGCTGCATTTCTTGCCACTAAGTTTGCG 2247
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2327 AGCTCAACCGCTGGACCTTCATACTCCATTGGGGCTGCATTTCTTGCCACTAAGTTTGCG 2386
Query 2248 GCTAATGCGCTTCGCACCATTCACAGGAACCGGGACACAAAGATTAGGGATTTGGTGAAG 2307
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2387 GCTAATGCGCTTCGCACCATTCACAGGAACCGGAACACAAAGATTAGGGATTTGGTGAAG 2446
Query 2308 CTGCAGAAGCCTCCCGAGCCTGATTTCACTGCTGACTGATGATTGAGCAGCTTGTAGACA 2367
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 CTGCAGAAGCCTCCTGAGCCTGATTTCACTGCTGACTGATGATTGAGCAGCTTGTAGACA 2506
Query 2368 ATGCTTGTTTATAATTTATAGGAAGCATTACGATTGACATAAACAAATATTTCATGGCTT 2427
| ||||||||||||||| |||| ||||||| |||| ||||||||||||| | ||||||
Sbjct 2507 TTA-TTGTTTATAATTTATGGGAATCATTACGGTTGAGATAAACAAATATTGCTTGGCTT 2565
Query 2428 TAGAGCTACTTGTACTGTCTGTAAAAT 2454
|| |||| ||||| |||||||||||||
Sbjct 2566 TAAAGCTGCTTGTGCTGTCTGTAAAAT 2592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121755170661
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5