BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495900
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57970.1 | Symbols: | DNA glycosylase superfamily protein |... 2041 0.0
> AT5G57970.1 | Symbols: | DNA glycosylase superfamily protein
| chr5:23466718-23469015 FORWARD LENGTH=1520
Length=1520
Score = 2041 bits (1105), Expect = 0.0
Identities = 1327/1428 (93%), Gaps = 40/1428 (3%)
Strand=Plus/Plus
Query 90 TAGAGCTTC-AAAAACTTCGAGAGGAATGAGTTTTTCTGTGATTTCCAAGAGAGTTTTGG 148
||||||||| ||||||||| | |||||||| | ||||| |||||||||||||||||||||
Sbjct 88 TAGAGCTTCAAAAAACTTCTAAAGGAATGAATGTTTCTTTGATTTCCAAGAGAGTTTTGG 147
Query 149 TTCGTTGACTGAG-TTAGTTTT--AGTTTTAG--A--G--ATCTAG---CA-ACTGAAA- 194
||||||||||||| |||||||| || | ||| | | | || | | ||| |||
Sbjct 148 TTCGTTGACTGAGTTTAGTTTTGGAGATCTAGCAACTGAAAGCTGGTTAAATACTTAAAT 207
Query 195 -G-C-T----GGCTACTGTTTGTGATTCCTCTCGATGGCGATGATGTTCGTGTGGAAAAA 247
| | | ||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 208 GGACGTAGCAGGCTACTGTTTGTGAATCCTCTCGATGGCGATGTTGTTTGTGTGGAAAAA 267
Query 248 GTATGGCCTGTTTCAGATGTTTCTCTGTTGATTCAAGTTATAAAAAGAGAGCCAAGGGTC 307
||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||
Sbjct 268 GTATGGCCTGTTTCAGATGTTTCTCTGTTGATTCAAGTT-TTAAACGAGAGCCAAGAGTC 326
Query 308 AGAAATCAGGTCACAGGCTCGTGAAAGCTG-TTTGAGTCAAACCCATGACTA-GTTCTCC 365
|||||||||||||||||||||||||||||| ||||||||||||||||| | | || ||||
Sbjct 327 AGAAATCAGGTCACAGGCTCGTGAAAGCTGCTTTGAGTCAAACCCATGTC-AGGTGCTCC 385
Query 366 TAGAGTTCAGTCCATGAATGTGGCTGAAGCAGAGACCAGGTCAACTATGGGGACTGCTGC 425
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |
Sbjct 386 TAGAGTTCAGTCCATGAATGTGGCTGAAGCAGAGACCAGGTCAACTCTGGGG--T-CTAC 442
Query 426 TGCTAAAAAGGCTAGTCCTTTCATCACACACAAAGCTGTATCAAAGTCACTGAGAAAGCT 485
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 443 TGCTAAAAAGGCTAGTCCTTTCATCACACACAAAGCTGTATCAAAGTCACTGCGAAAGCT 502
Query 486 TGAAAGATCATCATCTGGGC-TCACTGGATCAGATGAGAAAACATCATATGCTACACCAA 544
||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 503 TGAAAGATCCTCATCTGGGCGT-ACTGGATCAGATGAGAAAACATCTTATGCTACACCAA 561
Query 545 CAGAAACTTTGTCTTCTTCTTCTTCTCAGAAGCATACTCTTAATGCGGCTTCTATACTAC 604
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CAGAAAC--TGT-GTCTTCTTCTTCTCAGAAGCATACTCTTAATGCGGCTTCTATACTAC 618
Query 605 GACGGCATGAGCAGAACCTAAATTCTAATCTGTCA-TTGAATGCATCATTTTCATCTGAT 663
||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||||
Sbjct 619 GACGGCATGAGCAGAACCTGAATTCTAATCTGTCACTT-AATGCATCGTTTTCATCTGAT 677
Query 664 GCCTCCATGGACTCGTTCCACAGCCGAGCATCAACGGGTCGGTTGATAAGATCCTATAGT 723
||||||||||||||||||||||||||||||||||| ||||| ||||| || || || |||
Sbjct 678 GCCTCCATGGACTCGTTCCACAGCCGAGCATCAACTGGTCGCTTGATTAGGTCGTACAGT 737
Query 724 GTTGGAAGTAGAAGTAAGTCTTACCCTTCCAAGCCAAGAAGTGTTGTCTCTGAAGGTGCT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTTGGAAGTAGAAGTAAGTCTTACCCTTCCAAGCCAAGAAGTGTTGTCTCTGAAGGTGCT 797
Query 784 TTGGATTCACCACCTAGTGGTTCAGAGACTAAGAAGAGGTGTGCTTGGGTGACACCAAAC 843
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 798 TTGGATTCACCACCTAATGGTTCAGAGACTAAGAAGAGGTGTACTTGGGTGACACCAAAC 857
Query 844 TCCGATCCATGCTATATTGTTTTCCATGATGAAGAATGGGGTGTGCCAGTTCACGATGAC 903
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TCCGATCCATGTTATATAGTTTTCCATGATGAAGAATGGGGTGTGCCAGTTCACGATGAC 917
Query 904 AAGAGGTTGTTTGAACTCCTTGTGCTTTCGGGTGCTTTGGCCGAACACACATGGCCTATG 963
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 918 AAGAGGTTGTTTGAACTCCTTGTGCTTTCGGGTGCTTTGGCCGAACACACATGGCCTACG 977
Query 964 ATACTGAGCAAGAGGCAGACCTTCAGGGAAGTTTTTGCTGATTTTGACCCCAATGCCATT 1023
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 978 ATACTGAGCAAGAGACAGGCTTTCAGGGAAGTTTTTGCTGATTTTGACCCCAATGCCATT 1037
Query 1024 GTGAAAATCAATGAGAAGAAGCTAATCGGTCCAGGAAGCCCCGCAAGCACTTTGTTGTCT 1083
||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||
Sbjct 1038 GTGAAAATCAATGAGAAGAAGATAATTGGTCCAGGAAGCCCGGCAAGCACTTTATTGTCT 1097
Query 1084 GATCTTAAGCTAAGGGCCGTCATAGAGAATGCGCGTCATATACTTAAGGTGATAGAAGAA 1143
||||||||||||||||| ||||| |||||||| || || |||||||||||||||||||||
Sbjct 1098 GATCTTAAGCTAAGGGCAGTCATTGAGAATGCACGCCAGATACTTAAGGTGATAGAAGAA 1157
Query 1144 TATGGGTCATTTGACAAGTATATATGGAGTTTTGTGAAGAATAAGGCGATTGTAAGCAAG 1203
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1158 TACGGATCATTTGACAAGTATATATGGAGTTTTGTGAAGAATAAGGCGATTGTGAGCAAG 1217
Query 1204 TTCAGGTACCAGCGACAAGTACCTGCAAAAACTCCAAAAGCAGAAGTGATAAGCAAAGAT 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1218 TTCAGGTACCAGCGACAAGTACCTGCAAAAACTCCAAAAGCAGAAGTGATAAGTAAAGAT 1277
Query 1264 CTAGTGAGAAGAGGGTTCCGCAGCGTAGGACCAACGGTGGTTTACTCCTTCATGCAGGCA 1323
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1278 CTAGTGAGAAGAGGGTTCCGCAGCGTCGGACCAACGGTGGTTTACTCCTTCATGCAGGCA 1337
Query 1324 GCAGGGATAACAAACGATCATCTCACCAGTTGTTTCAGGTTCCACCATTGTATATTCGAA 1383
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1338 GCAGGGATAACAAACGATCATCTTACCAGTTGTTTCAGGTTCCACCATTGTATATTCGAA 1397
Query 1384 CAAGAAAGGTATGTCTGAAAAGAGGGACTTCCTTTTAACTTGTTAAGAAGCCTCTTTTAT 1443
|| |||||||||||||||||||| ||||||||| |||||||||| | | | |||||||
Sbjct 1398 CATGAAAGGTATGTCTGAAAAGAAGGACTTCCTAA-AACTTGTTAA-A-GTC-CTTTTAT 1453
Query 1444 GTTTTGTAAAGCCTCCAATTTGAGTCTATTATTAGTATTCAAAACAAT 1491
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 GTTTTGTAAAGCCTCCAATTTGAGTCTATTATTAGTATTCAAAACAAT 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5