BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495902
Length=2837
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23 |... 3960 0.0
> AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23
| chr5:23470014-23474104 REVERSE LENGTH=2891
Length=2891
Score = 3960 bits (2144), Expect = 0.0
Identities = 2636/2866 (92%), Gaps = 63/2866 (2%)
Strand=Plus/Plus
Query 1 TTCTTCTTCATTTACACAATTTCTGTTCCCGACAATCACACGGATTGTTGATTCCTCTGG 60
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 37 TTCTTCTTCATTCACACAATCTCTCTTCCCGACAATCACACGGATTGTTGATTCCTCTGG 96
Query 61 ATTT--GGTGAATGGAGGTTGCTACAAGCAGCACCGAATTCAGGATCCAAACGGATCGGG 118
|||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 97 ATTTGGGGTGAATGGAGGTTGCTACGAGCAGCACCGAAATCACGATCCAAACGGATCGGG 156
Query 119 ATCCGTCGTCGAACAATAACGGATCTTGCGCTGTTGCTTCGTCTACCGCTTCCGCCGTGT 178
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 157 ATCCGTCGTCGAACAACAACGGATCTTGCGCTGTTGCTTCCTCTACCGCTTCCGCCGTCT 216
Query 179 TCAGAAAGATCGAATTTCACCCTGCAAGGAAACCCTTCAATGGTTTCTCTAATGGGCGTT 238
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 217 TCAGAAAGATCGAGTTTCACCCTGCAAGGAAACCCTTCAACGGTTTCTCTAATGGGCGTT 276
Query 239 CCGATTTTAAGATCGAGACTTTGAATCCCTGCTCCGGTAACAATCGAGTCTTATCTGCTC 298
|||||||||||||||||||||||||||| |||||| |||| | ||| | |||||||| |
Sbjct 277 CCGATTTTAAGATCGAGACTTTGAATCCTTGCTCCTCTAACCAGCGACTGTTATCTGCAC 336
Query 299 CGTCCGTTAAGAAACCCGACGGCTCCGATTTGAAGGAACATGGGTTCGATCCCGAGCTTA 358
|||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||
Sbjct 337 CGTCCGCTAAGAAACCCGACAGCTCCGATTTGTTGGAACATGGGTTCGAACCCGATCTTA 396
Query 359 CTTTTAGCATTACCTTCCGCAAAATCGGTGCGGGTTTGCAGAATCTCGGGAATACATGTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CTTTTAGCATTACCTTCCGCAAAATCGGTGCGGGTTTGCAGAATCTCGGGAATACATGTT 456
Query 419 TTCTTAACTCAGTATTGCAATGTTTGACATACACTGAGCCTTTAGCTGCTACTCTTCAAA 478
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 457 TTCTTAATTCCGTATTGCAATGTTTGACATACACTGAGCCTTTAGCTGCTACTCTGCAAA 516
Query 479 CCGCTGCACATCAGAAATATTGTCATGTTGCTGGATTCTGTGCTTTATGTGCGATCCAGA 538
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 517 CCGCTGCGCATCAGAAATATTGTCATGTTGCTGGATTTTGTGCTTTATGTGCGATCCAGA 576
Query 539 AACATGTCAGGACTGCCCGTCAAGCTACTGGCAGAATATTAGCACCAAAGGATTTGGTCT 598
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 577 AACATGTCAGGACTGCCCGTCAAGCTAATGGCAGAATATTAGCACCAAAAGATTTGGTCT 636
Query 599 CAAACTTGCGATGCATATCCCGAAACTTCAGAAATTGCCGGCAGGAGGATGCACATGAGT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CAAACTTGCGATGCATATCCCGAAACTTCAGAAATTGCCGGCAGGAGGATGCACATGAGT 696
Query 659 ACATGATCAATTTGCTTGAATGCATGCACAAGTGTAGTCTGCCCTCTGGTGTACCAAGTG 718
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 697 ACATGATCAATTTGCTTGAATGCATGCACAAGTGTAGTCTACCTTCTGGTGTACCAAGTG 756
Query 719 AATCCTCTGATGCTTACAGGAGAAGTTTGGTACACAAAATTTTTGGTGGTAGCCTTAGAA 778
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 757 AATCCTCTGATGCTTACAGGAGAAGTTTGGTACACAAGATTTTTGGCGGTAGCCTTCGAA 816
Query 779 GTCAGGTGAAATGCGAGCAATGTTCCCATTGCTCCAACAAGTTTGATCCATTTCTCGACC 838
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 817 GTCAGGTGAAATGCGAGCAATGTTCCCATTGCTCCAACAAGTTTGATCCGTTTCTTGACC 876
Query 839 TAAGTCTAGACATTTCGAAGGCAGATTCATTGCAGAGAGCACTTTCACGTTTCACTGCTG 898
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 877 TAAGTCTAGATATTTCAAAGGCAGATTCATTGCAGAGAGCACTTTCGCGTTTCACTGCTG 936
Query 899 TTGAGCTCTTAGATGATGGTTCAAAGGTTTACCAATGTGAAAGATGCAAGCAGAAAGTGA 958
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 937 TTGAGCTCTTAGATAATGGTGCAAAGGTTTACCAATGTGAAAGATGCAAGCAGAAAGTTA 996
Query 959 AGGCTAGAAAACAGCTAACTGTTTCTAAAGCACCTTATGTTCTTACCATACATCTTAAGC 1018
|||||| |||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||
Sbjct 997 AGGCTAAAAAACAGCTAACTGTTTCTAAAGCACCTTACGTTCTAACCGTACATCTGAAGC 1056
Query 1019 GGTTTGAAGCACACAGATCCGAAAAAATCGACAGGAAAGTCGAGTTTGCCTCTGCAATTG 1078
||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||
Sbjct 1057 GGTTTGAAGCACACAGATCCGAAAAAATCGATAGGAAAGTAGATTTTACCTCTGCAATTG 1116
Query 1079 ACATGAAACCTTTTGTCAGTGGTCCCCATGAAGGTAATTTGAAGTACACTCTATATGGTG 1138
||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 1117 ACATGAAACCTTTCGTCAGTGGTCCTCATGAAGGTAATTTGAAGTATACTCTATATGGCG 1176
Query 1139 TGTTAGTTCATTATGGTCGAAGCAGCCATTCTGGTCACTATGCATGCTTTGTTCGCACAT 1198
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1177 TGTTAGTTCATTATGGTCGAAGCAGCCATTCTGGTCACTACGCCTGCTTTGTTCGCACAT 1236
Query 1199 CAAGTGGCATGTGGTATTCCCTTGACGACAATAGGGTTCTCCAAGTTAGTGAGAAGACTG 1258
||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1237 CAAGTGGCATGTGGTATTCCCTTGATGACAACAGGGTTGTCCAAGTTAGTGAGAAGACTG 1296
Query 1259 TCTTCAATCAGAAGGCATATATGCTATTCTATGTCCGTGATAGACAAAATGCGGTCCCTA 1318
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1297 TGTTCAATCAAAAGGCATATATGCTATTCTATGTCCGTGATAGACAAAATGCTGTCCCTA 1356
Query 1319 AGAATTTAGTCCCTGTGGTTAAGAAAGAGACTTCGAAAGAAAGCTTTGCCACAAACAGAG 1378
|||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1357 AGAATTCAGTCCCTGTGGTTAAGAAAGAGA----G--------CTTTGCCACAAACAGAG 1404
Query 1379 CTTCTTTGATCGTATCTTCTAACATAAAAGATCAAGTGAATGGCTCAACAGTCACCAAAG 1438
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1405 CTTCTTTGATCGTAGCTTCTAACATAAAAGATCAAGTGAATGGCTCAACAGTCATCAAAG 1464
Query 1439 AATGTGGGTTTGACGCTCTTGTTGCCAATGGTTTAGCACCTTTGAAATCATGTGATCCAA 1498
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1465 AATGTGGGTTTGGCGCTCTTGTTGCCAATGGTTTAGCACCTTTGAAATCATGTGGCCCAA 1524
Query 1499 GTGCTCCTGCTGTCTTAACTCAGAAAGATTTAAATACCAAAGAGACTCAGAACAAT-CTC 1557
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1525 GTACTCCTGCTGTCTTAACTCAGAAAGATTTAAATGCCAAAGAGACTCAGAACAATGC-C 1583
Query 1558 ATAAGTAGTGTGGAGGCAAAAGAGATCCTTAAGATGGAAAATGGTTCAGCACCCGTAAAA 1617
||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||| |||
Sbjct 1584 ATAAGTAATGTGGAGGCAAAAGAGATCCTTGAGACGGAAAATGGTTCGGCACCCGTGAAA 1643
Query 1618 ACTTGTGATCTAGCTGCTCCTACTGTCTTAGTTCAGAAAGACTTAAATACCAAAGAGACC 1677
||||||||| ||||||| ||||||||||| |||||||||||| ||||||| ||||||| |
Sbjct 1644 ACTTGTGATTTAGCTGCCCCTACTGTCTTGGTTCAGAAAGACCTAAATACAAAAGAGATC 1703
Query 1678 TTGCAAAAGGAAGTGCCACTTCCGCAGGCTAATGGGGAAGAATATTTGGTAAAGGAGGAT 1737
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1704 TTCCAAAAGGAAGTGCCACTTCCGCAGGCTAATGGGGAAGGATCTTTGGTAAAGGAGGAT 1763
Query 1738 TCAAAGGCTGCATGCCTAACATTACCAGGGAAGGTGTCACCGCTCTTGGATGGAAGCACA 1797
||||||||||||||||||| |||||||| ||||||||| || | | ||||||||||| ||
Sbjct 1764 TCAAAGGCTGCATGCCTAATATTACCAGAGAAGGTGTCTCCTCACCTGGATGGAAGCGCA 1823
Query 1798 AATGCTCAGA-TACTTTTGAAATTGCCTGCCTCT-GGAGCTAAAGCTGAAAATAGTGTTG 1855
|||||||||| | ||| |||| |||||| || || ||| |||||||||||||||||||||
Sbjct 1824 AATGCTCAGACT-CTTGTGAAGTTGCCTACC-CTTGGACCTAAAGCTGAAAATAGTGTTG 1881
Query 1856 AAGGGAAGGATTCTGTTAACAATTTGAACGAGCCTGCTAATTCACTGAAGGTGAAAAACG 1915
||| |||| ||||| ||||||||||||| ||||||||||||||||||||||| | ||| |
Sbjct 1882 AAGAGAAGAATTCTCTTAACAATTTGAATGAGCCTGCTAATTCACTGAAGGTTATAAATG 1941
Query 1916 TGTCAATTGGTAATTCACCTATTGAAGAAGCTGTTCTTATTAATCAAACTATGGGACATC 1975
||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1942 TGTCAGTTGGTAATCCACCTGTTGAAAAAGCTGTTCTTATTGATCAAACTATGGGACATC 2001
Query 1976 ACCCGGAAGAATCGGCCACTTCAATTGAGCCGTTGAAGTCAACTTCCGAGAGGGAGACTC 2035
|| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 2002 ACTTGGAAGAATCGGCCACTTCAATTGAGTCATTGAAGTTAACTTCCGAGAGGGAGACTC 2061
Query 2036 TCACCACACC-AAGAAAGACTCGCAAGCGTAAAATGAAAACTCTGAAGGTGGAGTTTAAG 2094
|||||||||| || |||||||||||||| ||||| |||||||||||||||||| || |||
Sbjct 2062 TCACCACACCGAA-AAAGACTCGCAAGCCTAAAACGAAAACTCTGAAGGTGGAATTCAAG 2120
Query 2095 TTTTTTAAGTTGGCCCTGGGCTTACGAAAAAAGAAGGTACAGAAAAGGGAAAGATTAAGT 2154
||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 2121 TTTTTCAAGCTGGCCCTGGGCTTACGAAAAAAGAAGGTACAGAGAAGGGAGAGATTAAGT 2180
Query 2155 A-GTACCCTAGCTGTCAAGATTATCTCTGAGGAGCTCCTATCCAAGAA-A-AGCTCTACA 2211
| | || |||||| | ||||||||||||||||||||||||| ||||| | || | || |
Sbjct 2181 ACG-ACGGTAGCTGGCGAGATTATCTCTGAGGAGCTCCTATCAAAGAAGAGAG-T-TAAA 2237
Query 2212 GATCAAGAG-CAT-TC-CACTT-CAC-A-GATAACTAACGAAAGT-GA-TCAAA-ATGGT 2262
||||||| || || || || | | | | ||| || || | | || | | |||||
Sbjct 2238 TATCAAGATACAAGTCTCA-TTGCCCCAAG-TAA--AATGATA-TCGAGT-AGTGATGGT 2291
Query 2263 GCCGCTGCGTCAGACCAACAGCAACCCGCGGGAAGTTCTGACTTGTCTGAAGCAAGCCAA 2322
|||| | ||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 2292 GCCGTTACGTCAGACCAACAGCAACCCGTGGGTAGTTCTGACTTGTCTGAGGCAAGCCAA 2351
Query 2323 ATCGCCAAAAGAAAGAGAGAGTCCTCAATTTTGTTACAGAAAGAAGCTGTGAATATTCTC 2382
| ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 2352 AACGCCAAAAGAAAGAGAGAGTC---AGTTTTGTTACAGAAAGAAGCTGTGAACATTCTC 2408
Query 2383 ACTCGGGGTGTGCCAGAGACAGTGGTTGCCAAATGGGATGAGGAATTTTCAACTTCTGC- 2441
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 2409 ACTCGGGGTGTGCCAGAGACAGTGGTTGCCAAATGGGATGAGGAAATTTCAGCTTCT-CA 2467
Query 2442 GAAGATGGGATCAAAGAGTGTAGGCACGAGCAGCATCGGTTATGTAGCAGATGAGTGGGA 2501
||||| |||||||||||||| |||| | |||||||| ||||||||||| |||||||||||
Sbjct 2468 GAAGAGGGGATCAAAGAGTGAAGGCGCAAGCAGCATTGGTTATGTAGCGGATGAGTGGGA 2527
Query 2502 TGAAGAATATGACAGAGGGAA-AAAGAAGAAGATAAGGATTAAAGAGGAGAGCTATGGAG 2560
||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 2528 TGAAGAATATGACCGAGGGAAGAAA-AAGAAGATAAGGATTAAAGAGGAGAGCTATAGAG 2586
Query 2561 GGCCGAACCCGTTCCAGATGCTTGCATCGAAGAGACAAACAGAGACAAAGAAGAAATGGA 2620
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2587 GGCCTAACCCGTTCCAGATGCTTGCATCGAAGAGACAAAAAGAGACAAAGAAGAAATGGA 2646
Query 2621 CACAACGCATAACT-ACTGCAAAGACAGCCTACAGGATATGAAAAAGGACCATAATCT-A 2678
||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 2647 CACAAAGCATAACTGAC-GCAAAGACAGCCTACAGGATATGAATAAGGACTATAATCTTA 2705
Query 2679 TAGATATATGTCATCCACATGTTACTGTATTTGGCGTAAAGTAATGTTAACAGAA-GAGG 2737
|| |||||||| ||||||||| | |||||| ||||||||||||||||||||| || ||||
Sbjct 2706 TACATATATGTAATCCACATGCTGCTGTATCTGGCGTAAAGTAATGTTAACA-AATGAGG 2764
Query 2738 AAAAGATAGGCTATAGACA-T--TAGACATTGTTCGTTTATCTCTTTTCCTCTCAGTTTT 2794
||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 2765 AAAAGATAGGCTATAGACAGTAGTAGACATTGTTCGTT-ATCTCTTTTCCTCTCAGTTTT 2823
Query 2795 GTTC-CGTTTGTGATAAACAGAGA--GACCCTATCCCCTGTTTTTT 2837
|||| | |||| |||||||||||| ||||||||||||||||||||
Sbjct 2824 GTTCTC-TTTGGGATAAACAGAGAAAGACCCTATCCCCTGTTTTTT 2868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140969109830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5