BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495905

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58005.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fam...   715    0.0  


> AT5G58005.1 | Symbols:  | Cytochrome c oxidase, subunit Vib family 
protein | chr5:23482187-23483165 FORWARD LENGTH=619
Length=619

 Score =  715 bits (387),  Expect = 0.0
 Identities = 439/463 (95%), Gaps = 8/463 (2%)
 Strand=Plus/Plus

Query  2    TTCTGTTTCCGTCTTCTTCGCTTAGACATCCATGGCTCTCGATACGTACGCGTCGTCGAA  61
            ||||| |||||||||||||||||||  |  ||||||||||||||| || |||||||||||
Sbjct  21   TTCTGATTCCGTCTTCTTCGCTTAG--A--CATGGCTCTCGATACTTATGCGTCGTCGAA  76

Query  62   CCCTAATGAGGTTCATGAGGATGTTCTTCTTAAAGCTAGAGATGCTTGCTACAAGGCCAG  121
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  77   CCCTAATGATGTTCATGAGGATGTTCTTCTTAAAGCTAGAGATGCTTGTTACAAGGCCAG  136

Query  122  AGATGCTTTTTACGCTTGTCTAGAAAAGGAATCTGGTAAAAAACCAACTGAAATCGCGAC  181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  137  AGATGCTTTTTACGCTTGTCTAGAAAAGGAATCTGGTAAAAAACCAACTGAAATCGCCAC  196

Query  182  CGTTGGTCTTCTCTACCCTAAGGAGTGTAGCAGTTCTAGAACCCAATTCGTCAACAACTG  241
            ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  197  CGTGGGTCTTCTCTATCCTAAGGAGTGTAGCAATTCTAGAACCCAATTCGTCAACAACTG  256

Query  242  TCGCTCCTCTTGGGTGAAGCATTTCGATAGAGAGTACTGTAGAAACAAGAGAGTTCAAAG  301
            ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  257  TCGGTCCTCTTGGGTGAAACATTTCGATAGAGAGTACTGTAGGAACAAGAGAGTTCAAAG  316

Query  302  GCTGTTGGATGATGGAGATGAGAGGAAAGGTCCAATGTCACTTCCTCAGCCTTACACTTT  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  GCTGTTGGATGATGGAGATGAGAGGAAAGGTCCAATGTCACTTCCTCAGCCTTACACTTT  376

Query  362  CAAGCCTTCCCCTTCCACTTAGA-G-T-CCTTCCTTTCCTGGTATTGAGGAAGATTACAA  418
            ||||||||| ||||||||||||| | | |||||||||| |||| ||||||||||||||||
Sbjct  377  CAAGCCTTCTCCTTCCACTTAGAAGATTCCTTCCTTTC-TGGTGTTGAGGAAGATTACAA  435

Query  419  TGGTCAAATACTGTTCCTGAATCATTTTCTTTGCCTAGTGTTT  461
            ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  436  TGGCCAAATACTGTTCCTGAATCATTTTCTTTGCCTAGTTTTT  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5