BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495908
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58020.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 2021 0.0
> AT5G58020.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735);
Has 385 Blast hits to 385 proteins in 189 species: Archae
- 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants -
50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
| chr5:23485500-23486818 FORWARD LENGTH=1319
Length=1319
Score = 2021 bits (1094), Expect = 0.0
Identities = 1241/1312 (95%), Gaps = 10/1312 (1%)
Strand=Plus/Plus
Query 1 CTCTCTCCTCGACCCCTAAATTTCCAATCACCGACCAAAATTGATCGGAAACCTAGAGCT 60
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 6 CTCTCTCCTCGACCCTTTAATTTCTAATCACCGACCAAAATTGATCGGAAACCTAGAGCT 65
Query 61 CTTCGTATTGTTCCGCCACCATGCAT-TGCCGGCGCCAGATCTTCGTCAAATCTCCAGAC 119
|||||||||| ||||||||||||||| | |||||||||||||||||| |||||||| |||
Sbjct 66 CTTCGTATTGCTCCGCCACCATGCATAT-CCGGCGCCAGATCTTCGTTAAATCTCCTGAC 124
Query 120 TGTCAACAAGTCTTCGCTCTGCAATTGGAACCTTCGCAATCTGTATTAACTCTTTCCGGT 179
|||||| ||||| |||||||||||||||| ||| |||||||| ||||||||||||| |||
Sbjct 125 TGTCAAAAAGTCGTCGCTCTGCAATTGGATCCTGCGCAATCTCTATTAACTCTTTCGGGT 184
Query 180 ATCACTTCCTTACTCGAATCGTCGCAGCGTAAATCGTTATCGGATTTCTCCG-TTGCCCT 238
||||||||||||||||||||||||||||||| |||||| |||| || || || || | ||
Sbjct 185 ATCACTTCCTTACTCGAATCGTCGCAGCGTATATCGTTTTCGGCTTGCT-CGATTACTCT 243
Query 239 AGATGGGAAGCTTTTGAATGGCTCTACACGGATCCAAGTATCTAAGCTTCCTTCTGTATC 298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 244 AGATGGGAAGCTTTTGAATGGCTCTACACGGATCCAAGTATCGAAGCTTCCTTCTGTATC 303
Query 299 CATGCTCACTCTGTTCCCTCGCCTCCGTGGAGGTGGAGGAGATGGAGGTGCGACGGGAGC 358
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 304 CATGCTCACTCTTTTCCCTCGCCTCCGTGGAGGTGGAGGAGATGGTGGGGCAACGGGAGC 363
Query 359 CGAGTCTCGCGATTGCTACCTGAATATGTACGCGGAGAAGAAACCTGACAAGGTTGATCC 418
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 364 CGAGTCTCGCGATTGCTATCTCAATATGTACGCGGAGAAGAAACCTGACAAGGTTGATCC 423
Query 419 GAATGAGCAGAGGCTCTCCAAATGGTTGAATTGTGCTTTGTCTAACGAACCTTTGGCTGA 478
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 424 TAATGAGCAGAGGCTCTCCAAATGGTTGAATTGTGCTTTGTCTAACGAGCCTTTGGCTGA 483
Query 479 GCCTTGCGTGATTGATCTCCTTGGGAATTTGTTCAATAAAGAAGCTTTGGTTCATGCTTT 538
||| |||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 484 GCCGTGCGTGATTGATCTCCTTGGGAATTTGTTCAATAAAGAAGTTTTGGTGCACGCTTT 543
Query 539 GTTATCTAAGAAGTTGCCTAAACAATTCTCGTACATTAAGGGTTTGAAAGATATGGTGAA 598
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GTTGTCTAAGAGGTTGCCTAAACAATTCTCGTACATTAAGGGTTTGAAAGATATGGTGAA 603
Query 599 TATTAAGCTTACGCCTGTTGCTGGTTCTGATGGTTCATCGCAAGATACGACTAGTTCCCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 604 TATTAAGCTTACGCCTGTTGCTGGTTCTGATGGTTCATCGCAAGATACGACTAGTGCACA 663
Query 659 GTTTCAGTGTCCGGTCTCAGGGCTTGAATTCAATGGAAAGTACAAGTTTTTCGCTTTGAG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GTTTCAGTGTCCGGTCTCAGGGCTTGAATTCAATGGAAAGTACAAGTTTTTCGCTTTGAG 723
Query 719 GGGATGTGGACATGTGATGAGCGCAAAGGCGTTGAAGGAAGTGAAGTCTTCTTCTTGTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GGGATGTGGACATGTGATGAGCGCAAAGGCGTTGAAGGAAGTGAAGTCTTCTTCTTGTTT 783
Query 779 GGTATGTCATGCAGATGTCAGAGATTCTGATAAGATTGTGATCAATGGTACAGAGGAGGA 838
||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 784 GGTGTGTCATGCGGATGTCAAAGATTCTGATAAGATTGTGATCAATGGTACTGAGGAGGA 843
Query 839 AGTGGGTTTGTTGAGGGAGAGGATGGAGGAGGAGAAAGCTAAGCTGAGAGAGAAGAAAGG 898
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGTAGATTTGTTGAGGGAGAGGATGGAGGAGGAGAAAGCTAAGCTGAGAGAGAAGAAAGG 903
Query 899 TGTCTCAAAGAAGAGCAAGAACGGTGCTGCTGTGGTGGCTGATACAGGAGCGAAGGTCGC 958
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 904 TGTCTCAAAGAAGAGTAAGAACGGTGCTGCTGTGGTGGCTGATACAGGTGCGAAGGTCGC 963
Query 959 TAAGAGACAGATGGATGATGGGAATGTCAATGGCAATGGTATTACTGTGAAGAAATTCAA 1018
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 964 AAAGAGACAGATAGAGGATGGGAATGTCAATGGCAATGGTATAACTGTGAAGAAATTCAA 1023
Query 1019 GGCGGGGGATAAAGTACCGGTTAATGCTACTAAGGAAGTCTATGCTTCTCTCTTTACTTC 1078
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GGCGGCGGATAAAGTGCCGGTTAATGCTACTAAGGAAGTCTATGCTTCTCTCTTTACTTC 1083
Query 1079 CTCCAAGAAGAAGTCTGATTTCAAGGAGACTTACTCTTGCAGGTCAATCCCTCTCGGCAG 1138
||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1084 CTCTAAGAAGAAGTCTGATTTCAGGGAGACTTACTCTTGCAGGTCACTTCCTCTCGGCAG 1143
Query 1139 GAACTGATTTGTTGGA-CAAATGTTGTTTACCTTGCTTGCTTCATTTGCTCTGTAATCTG 1197
||| |||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct 1144 GAATTGATTTGTTGGATCAA-TGTTGTTTACCT-GCTCGCTTCATTTGCTCTGTAATCTG 1201
Query 1198 TTCTGATTATATTGATATATCAACTTGCTTT-GTAAGTTCGCC-ACTGGATAATATAATG 1255
|| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 1202 TTTTGATTATATTGATATATCAACTTGCTTTTGTAATTTCGCCTACTGGATAATATAATG 1261
Query 1256 TGTTTCTTTTTCTTTCGCAATTGGTAAAAAGA-TAAACATGTTTGCATCCAC 1306
| |||||||| |||| |||||||||||||| | |||||||||||||||||||
Sbjct 1262 TTTTTCTTTTCCTTTTGCAATTGGTAAAAACAGTAAACATGTTTGCATCCAC 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5