BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495912
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58060.2 | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like super... 935 0.0
AT5G58180.1 | Symbols: ATYKT62, YKT62 | Synaptobrevin family pr... 545 2e-154
AT5G58070.1 | Symbols: ATTIL, TIL | temperature-induced lipocal... 355 4e-97
> AT5G58060.2 | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like superfamily
protein | chr5:23498139-23500384 FORWARD LENGTH=1060
Length=1060
Score = 935 bits (506), Expect = 0.0
Identities = 594/633 (94%), Gaps = 20/633 (3%)
Strand=Plus/Plus
Query 326 GTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGGTTCATGGATGATCATTATCCT 385
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 406 GTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTACCCT 465
Query 386 GTTCGAAGTGCTTTTTCTCTTCTCAATCAGGTCCTAGATGAGTACCAGAAGAGTTTTGGT 445
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GTTCGAAGTGCTTTCTCTCTTCTCAATCAGGTCCTAGATGAGTACCAGAAGAGTTTTGGT 525
Query 446 GAGGCATGGAGGTCTGCAAAAGAAGACTCCAGTCAGCCTTGGCCATACTTAACAGAAGCT 505
||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 526 GAGTCATGGAGGTCTGCAAAAGAAGACTCCAATCAGCCTTGGCCATACTTAACCGAAGCT 585
Query 506 TTAAACAAATTTCAGGACCCAGCAGAGGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTG 565
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 586 TTAAACAAATTTCAGGACCCAGCAGAGGCTGATAAGCTGTTGAAAATCCAGAGGGAGTTG 645
Query 566 GATGAGACCAAGATTATCCTTCATAAAACCATTGATAGTGTTCTAGCCCGTGGTGAGAAG 625
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GATGAGACAAAGATTATCCTTCATAAAACCATTGATAGTGTTCTAGCCCGTGGTGAGAAG 705
Query 626 CTGGACAGCTTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATCACAGATGTTTTACAAG 685
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CTGGACAGCCTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATCACAGATGTTTTACAAG 765
Query 686 CAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTGGAAGAG-TCCTGGGTAT 744
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 766 CAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTGGAAGTCCTGCTGGGTAT 825
Query 745 ATAGTCAACCAAACTTTTGCTGGGGGGAGACTGTTTTT-CTAT------A-C-ATA--TA 793
|||||||||||||||||||||||||||||||||||||| |||| | | ||| ||
Sbjct 826 ATAGTCAACCAAACTTTTGCTGGGGGGAGACTGTTTTTTCTATCGTCTTATCTATACATA 885
Query 794 -A-TTCCGTCTGTAGTTTGCATGCATTATTT-GATATTCCATAAGACTCGCGTCGTGTGG 850
| |||||||||||||||||||||||||||| ||| | ||||||| |||| |||||||||
Sbjct 886 TAATTCCGTCTGTAGTTTGCATGCATTATTTTGAT-T-CCATAAGTCTCGAGTCGTGTGG 943
Query 851 TGTGTTTATCCAAATACATAATGTCA-CTTCTGCAAGATTTCAATTGTGTTTGCCAGATT 909
|||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||
Sbjct 944 TGTGTTTATCCAAATACATAATGTCAACTTCTGCAAGATTTGAATTGTCTTTCCCAGATT 1003
Query 910 --ATCTGATTGAATTTGTGCGCGCTTCCTTATG 940
||||||||||||||||| |||||||||||||
Sbjct 1004 TGATCTGATTGAATTTGTGTGCGCTTCCTTATG 1036
Score = 483 bits (261), Expect = 2e-135
Identities = 300/319 (94%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 1 GCGTCTGGTTCGACACCTCAAAACTTAATTTGCCTTAAGCATCTCCGACTTA-GTTTCCA 59
|||| ||||||||||||||||||||| |||||||| ||||||||||| | | | ||||
Sbjct 13 GCGTTTGGTTCGACACCTCAAAACTTGTTTTGCCTTTAGCATCTCCGAGTAAGGAATCCA 72
Query 60 GGTCCAACGCCTCTTCTCCT-CTCCTCCTCGCTTCCTTCTCACGCAACCTTCGATCCACC 118
||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 73 GGTCCAAAGCCTCTTCTCTTCCTCCTCCTCGCTTCCTTCTCACGCAACCTTGGATCCACC 132
Query 119 GCAGCTATGAAGATCACCGCCTTGCTGGTTCTCAAGTGCGCTCCCGAAGCTTCTGATCCC 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 133 GCAGCTATGAAGATCACCGCCTTGCTCGTTCTCAAGTGCGCTCCCGAAGCTTCTGATCCC 192
Query 179 GTCATCCTCGCCAACGCTTCCGACGTCTCTCACTTCGGTTATTTCCAGCGATCTAGCGTC 238
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 193 GTCATCCTCTCCAACGCTTCGGACGTCTCTCACTTCGGTTATTTCCAGCGATCTAGCGTC 252
Query 239 AAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCCAGCCGAACCCCTCCTTCCCAGCGC 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 253 AAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCTAGCCGAACCCCTCCTTCCCAACGC 312
Query 299 CAGTCTGTCCAACACGAAG 317
|||||||| ||||||||||
Sbjct 313 CAGTCTGTTCAACACGAAG 331
> AT5G58180.1 | Symbols: ATYKT62, YKT62 | Synaptobrevin family
protein | chr5:23544011-23545760 FORWARD LENGTH=852
Length=852
Score = 545 bits (295), Expect = 2e-154
Identities = 513/616 (83%), Gaps = 24/616 (4%)
Strand=Plus/Plus
Query 125 ATGAAGATCACCGCCTTGCTGGTTCTCAAGTGCGCTCCCGAAGCTTC-TGATCCCGTCAT 183
||||||||||| |||||||| ||||||||||||| ||||||| | | || ||||| ||
Sbjct 1 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAAC-ACGCGAACCCGTTAT 59
Query 184 CCTCGCCAACGCTTCCGACGTCTCTCACTTCGG-----T-TATTTCCAGCGATCTAGCGT 237
||| ||||||| ||||||| |||| || ||||| | | ||| | || |||| | |
Sbjct 60 CCTGGCCAACGTTTCCGACCTCTCACAATTCGGAAAATTCTCTTTTTATCGCTCTAACTT 119
Query 238 C-AAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCCAGCCGAACCCCTCCTTCCCAGC 296
| || |||||| | || || | | || ||||| ||||| |||||||||| ||||
Sbjct 120 CGAA-GAGTTCATTGTATTCATTGCCCGTACTGTTGCCAGAAGAACCCCTCCAGGTCAGC 178
Query 297 GCCAGTCTGTCCAACACGAAGAGTACAAGGTTCACGCTTACAATAGAAATGGCCTTTGCG 356
|||| || ||| ||||||||||||| || || ||||||||||| | ||||||||| ||||
Sbjct 179 GCCAATCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGCG 238
Query 357 CGGTGGGGTTCATGGATGATCATTATCCTGTTCGAAGTGCTTTTTCTCTTCTCAATCAGG 416
| || || |||||||| || |||||||| ||||||||||| |||||||||||||||||||
Sbjct 239 CCGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCAATCAGG 298
Query 417 TCCTAGATG-AGTACCAGAA-GAGTTTTGGTGAGGCATGGAGGTCTGCAAAAGAAGACTC 474
| |||||| | |||||||| || || |||||| ||||||||| || | || ||||
Sbjct 299 TATTAGATGTA-TACCAGAAGGA-TTATGGTGACACATGGAGGTTTG----A-AA-ACTC 350
Query 475 CAGTCAGCCTTGGCCATACTTAACAGAAGCTTTAAACAAATTTCAGGACCCAGCAGAGGC 534
|||||||| ||||||||||||| |||||||| | ||||||||| |||||| ||||| ||
Sbjct 351 TAGTCAGCCGTGGCCATACTTAAAAGAAGCTTCAGACAAATTTCGGGACCCGGCAGAAGC 410
Query 535 TGATAAGCTGTTGAAAATTCAGAGGGAGTTGGATGAGACCAAGATTATCCTTCATAAAAC 594
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 411 TGATAAGCTGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTCATAAAAC 470
Query 595 CATTGATAGTGTTCTAGCCCGTGGTGAGAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGA 654
||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 471 CATTGATGGTGTCCTAGCCCGAGGTGAAAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGA 530
Query 655 TTTGAGCATGGCATC-ACAGATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTA 713
|| ||| ||||||| | ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 531 GTTAAGCCTGGCATCGA-AGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTA 589
Query 714 CTA-TTCTGTGAGCTG 728
| | |||| | |||||
Sbjct 590 C-ACTTCTCTAAGCTG 604
> AT5G58070.1 | Symbols: ATTIL, TIL | temperature-induced lipocalin
| chr5:23500061-23501209 REVERSE LENGTH=1065
Length=1065
Score = 355 bits (192), Expect = 4e-97
Identities = 260/289 (90%), Gaps = 20/289 (7%)
Strand=Plus/Minus
Query 670 ACAGATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTGG 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 ACAGATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTGG 993
Query 730 AAG-AGTCCTGGGTATATAGTCAACCAAACTTTTGCTGGGGGGAGACTG---------T- 778
||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 992 AAGTCCTGCTGGGTATATAGTCAACCAAACTTTTGCTGGGGGGAGACTGTTTTTTCTATC 933
Query 779 -T-TT-TCTATACATATAATTCCGTCTGTAGTTTGCATGCATTATTT-GATATTCCATAA 834
| || ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 932 GTCTTATCTATACATATAATTCCGTCTGTAGTTTGCATGCATTATTTTGAT-T-CCATAA 875
Query 835 GACTCGCGTCGTGTGGTGTGTTTATCCAAATACATAATGTCA-CTTCTGCAAGATTTCAA 893
| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 874 GTCTCGAGTCGTGTGGTGTGTTTATCCAAATACATAATGTCAACTTCTGCAAGATTTGAA 815
Query 894 TTGTGTTTGCCAGATT--ATCTGATTGAATTTGTGCGCGCTTCCTTATG 940
|||| ||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 814 TTGTCTTTCCCAGATTTGATCTGATTGAATTTGTGTGCGCTTCCTTATG 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5