BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495914
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58090.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2558 0.0
> AT5G58090.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:23505366-23507288 REVERSE LENGTH=1719
Length=1719
Score = 2558 bits (1385), Expect = 0.0
Identities = 1583/1679 (94%), Gaps = 12/1679 (1%)
Strand=Plus/Plus
Query 1 GGAAACAGTACCAGCTAAGCTCGCAGCTCAAAGCTCATTGTGTAATAATTGTATAGCTTT 60
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1 GGAAATAGTACCAGCTAAGCTCGCAGCTCAAAGCTCAGTGTTTAATAATTGTATAGCTTT 60
Query 61 TTTGGTGAAAAGAAGAGTCAGATCGGCGAGCCTGAGATGGGTTGGGGTTCGGTGTTGCTA 120
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGGTG-AACGAAGAGTCAGATCGGCGAGCCTGAGATGGGTTGGGGTTCGGTGTTGCTA 119
Query 121 TTCCTGGCGGTGGCTCTGCTTTGTCAGAGGACAAGTTCAATCGGAGCTAACTGGGGCACA 180
|| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TTACTGGCGGTGGCTCTTCTTTGTCAGAGGGCAAGTTCAATCGGAGCTAACTGGGGCACA 179
Query 181 CAGGCGTCGCACCCTCTTCCACCGGACATAGTTGTGCGGATGCTAAGAGAGAATGGTATT 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGGCGTCGCACCCACTTCCACCGGACATAGTTGTGCGGATGCTAAGAGAGAATGGTATT 239
Query 241 CAGAAAGTTAAGCTCTTTGACGCCGAGTACGACACTCTCAGAGCTTTGGGCAAATCCGGA 300
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 CAGAAAGTAAAGCTCTTTGACGCCGAATACGACACTCTCAGAGCTTTGGGCAAATCCGGA 299
Query 301 ATCGAAGTCATGGTTGGTATTCCCAATGAGATGCTTGCAACTCTCGCCTCTAGCCTCAAA 360
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 300 ATCGAAGTCATGGTTGGTATTCCCAATGAGATGCTTGCGACTCTCGCCTCTAGCCTGAAA 359
Query 361 GCTGCTGAGAAATGGGTTGCTAAAAATGTCTCTACTCACATCTCCACCGACAACGTCAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTGCTGAGAAATGGGTTGCTAAAAATGTCTCTACTCACATCTCCACCGACAACGTCAAC 419
Query 421 ATCAGATATGTGGCTGTTGGCAATGAACCTTTCTTGTCTACATATAATGGGAGCTATCTG 480
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 420 ATCAGATATGTGGCTGTTGGGAATGAACCTTTCTTGTCTACTTATAATGGGAGCTATCTG 479
Query 481 AGTACTACTTTCCCTGCGTTGAGGAACATCCAAATTGCAATTATAAAGGCTGGACTTCAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 AGTACTACTTTCCCTGCGTTGAGGAACATCCAAATTGCAATTATAAAGGCTGGCCTTCAG 539
Query 541 AACCAAGTGAAGGTCACTTGTCCCTTGAACGCTGATGTCTATGACAGCTCCACCACTTTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACCAAGTGAAGGTCACTTGTCCCTTGAACGCTGATGTCTATGACAGCTCCACCACTTTT 599
Query 601 CCTTCTGGAGGGGATTTCAGAGCTAATATCCGTGATCTCATGATCACTATCGTCAAGTTC 660
|||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 600 CCTTCTGGAGGGGACTTCAGGGCCAATATCCGTGACCTCATGATCACTATCGTCAAGTTC 659
Query 661 TTGAGCGAAAATGGCGGCCCTTTCACCGTTAACATCTACCCTTTCATCAGTCTTTACAAC 720
||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
Sbjct 660 TTGAGCGAAAATGGCGGTCCTTTCACTGTTAACATCTACCCTTACATCAGTCTTTACACC 719
Query 721 AACCCCGATTTCCCAGTCGATTACGCTTTCTTTGACGGCAATTCACAGCCCCTGAACGAT 780
||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 720 AACCCCGATTTCCCAGTTGATTACGCCTTCTTTGACGGCAATGCACAGCCCCTGAACGAT 779
Query 781 GGTGGGACTTTTTATTACAACATGTTTGATGCAAATTACGACACTCTAGTGCACGCGCTG 840
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 780 GGTGGGACTTTTTATTACAACATGTTTGATGCAAATTACGACACCCTAGTCCACGCGTTG 839
Query 841 GAGAAGAATGGTTTTGGTAACATGCCTATCATAATTGGGGAGATTGGTTGGCCTACTGAT 900
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 840 GAGAAGAATGGGTTTGGTAACATGCCTATCATTATTGGGGAAATTGGTTGGCCTACTGAT 899
Query 901 GGGGACAGTAACGCGAATGTGGACTACGCTAGGAAGTTCAACCAAGGGTTCATGGCTCAC 960
||||||||||| |||||| |||||||||||| ||||||||||||||| || |||||||||
Sbjct 900 GGGGACAGTAATGCGAATTTGGACTACGCTAAGAAGTTCAACCAAGGCTTTATGGCTCAC 959
Query 961 ATCTC-GGGCGGGAAGGGGACTCCGAGGAGACCTGGCCCTATCGATGCGTATCTGTTCAG 1019
||||| ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 960 ATCTCAGGG-GGGAAAGGGACTCCGAGGAGACCTGGCCCTATCGATGCATACCTGTTCAG 1018
Query 1020 CTTGATAGATGAGGACGCCAAAAGTGTTCAGCCAGGATACTTTGAGCGACATTGGGGGAT 1079
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 CTTGATAGACGAGGACGCCAAGAGTGTTCAGCCAGGATACTTTGAGCGACACTGGGGGAT 1078
Query 1080 ATTCACATTTGACGGCTTACCAAAATAC-CTCTTGAACCTAGGAACAACCAACTCAGGAT 1138
||||||||||||||||||||||||||| | |||||||||||| ||||| ||| |||||
Sbjct 1079 ATTCACATTTGACGGCTTACCAAAATATGC-CTTGAACCTAGGGACAACGAACACAGGAG 1137
Query 1139 CTCTGATCCAAGCCAAAGGGGTACGTTATCTACAGAGGAAGTGGTGTGTGATGAGGCCAA 1198
|||||||||| |||||||||||||| || ||| ||||||||||||||||||||| |||||
Sbjct 1138 CTCTGATCCAGGCCAAAGGGGTACGCTACCTAGAGAGGAAGTGGTGTGTGATGAAGCCAA 1197
Query 1199 ATGTGAGGTTGGACGATCCGCAGGTGGCTCCCAGC-GTGAGCTACGCATGTAGCCTCGGG 1257
||||||||||||| ||||||||||| ||||| ||| ||||||||||| |||||||| |||
Sbjct 1198 ATGTGAGGTTGGATGATCCGCAGGTAGCTCC-AGCCGTGAGCTACGCGTGTAGCCTTGGG 1256
Query 1258 GACTGCACCAGCCTCGGGGTTGGGACGTCCTGTGCGAATCTTGACGGGAAACAAAACATA 1317
||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1257 GACTGTACTAGTCTTGGGGTTGGGACGTCCTGTGCTAATCTTGACGGGAAACAAAACATA 1316
Query 1318 TCGTATGCATTCAACAGTTACTATCAGATACAGGACCAGCTTGATACAGCTTGTAAGTTT 1377
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1317 TCGTATGCATTCAACAGTTATTATCAGATACAGGATCAGCTTGATACAGCTTGTAAGTTC 1376
Query 1378 CCAAACATATCAGAGGTGACCAAGACAGATCCCTCTACTGGAACCTGCAGATTTCCGATT 1437
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1377 CCAAACATATCAGAGGTGACCAAGACAGATCCATCTACTGGAACTTGCAGATTTCCGATT 1436
Query 1438 ATGATAGAGCCTTACTACGGTGGGGCAGCCCGGGAACACAGCTTCTTCTTCCCACTAGTG 1497
|||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||| ||
Sbjct 1437 ATGATAGAACCTTACTACGGTGGGGCAGCCCGGGAACACGGGTTCTTTTTCCCACTACTG 1496
Query 1498 ATCGCGGCAGCCATCGCAGTCTCTATTTTTTGATGGTTTCTTCTTGTCAATTTGTAATTC 1557
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATGGTGGCAGCCATCGCAGTCTCTATTTTTTGATGGTTTCTTCTTGTCAATTTGTAATTC 1556
Query 1558 TGTGTGATGGCTTGAACTCttttttttattattttttttGAATTCTGATTTCTCTTCCCC 1617
|||||||||||||||||| |||||||| | || || |||||||||||||||||||
Sbjct 1557 TGTGTGATGGCTTGAACTATTTTTTTT-TC-TTCTT---GAATTCTGATTTCTCTTCCTT 1611
Query 1618 AGACCAAGTGATTATTAGAGCAATTTCCAGGGAACAAACTGACCTTAAAACAATGCCAT 1676
||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||
Sbjct 1612 AGACCAAGTGATTATTAGAGCTGTTTTCTGGGACCAAACTGACCTTAAAACAATGCCAT 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82830899250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5