BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495916
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58110.1 | Symbols: | chaperone binding;ATPase activators |... 1170 0.0
> AT5G58110.1 | Symbols: | chaperone binding;ATPase activators
| chr5:23515156-23516639 FORWARD LENGTH=870
Length=870
Score = 1170 bits (633), Expect = 0.0
Identities = 777/840 (93%), Gaps = 35/840 (4%)
Strand=Plus/Plus
Query 1 GAGACATCGGAGGAACCCTAAATTGAATgagaagaggagagtgag--gggagagacagag 58
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 37 GAGACATCGGAGGAACCCTAAATTGAATGAGAAGAGGAGAGTGAGACGGGAGAGA-A-AG 94
Query 59 agagagagagagagagagcaaagtcatggagagagaggaggagaagaagaaagagGGCTC 118
|||| ||| || ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 95 CCAGAGCGAGCGATAGAGCAAAGACATGGAGAGAGAGGAGGAGAAGACGAAAGAGGGCTC 154
Query 119 ATCGTATAGATACTGGGTGAGAGAAGCCACCTCAGACGCAGCTCCTCCTCCTCTGCCACA 178
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 155 ATCGTATAGGTACTGGGTGAGAGAAGCCACCTCAGACGCAGCTCCTCCTCCTCTGCCCCA 214
Query 179 GAAGCTCAGCAACAACGACGTCGCTCTCAATGCTGCTCCTGCGTCCCTTGGCTCTCTCTG 238
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 215 AAAGCTCAGCAACAACGACGTCTCTCTCAATACTGCTCCTGCGTCCCTTGGCTCTCTCTG 274
Query 239 GAATCGGGCTGGCACTTGGGAGGAGAAAAGTCTAACCAAATGGGCCACTGACCGATTAAA 298
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 275 GAATCGGGCTGGCACTTGGGAGGAGAAGAGTCTCACCAAATGGGCTACTGACCGATTAAA 334
Query 299 GGAGCTGTTGGGATCAGTGGGTTCATTGCAATTCTCTTCTGGAAAAGCTGAGATTATAGA 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 335 GGAGCTGTTGGGATCAGTGGGTTCATTGCAGTTCTCTTCTGGAAAAGCTGAGATTATAGA 394
Query 359 TGTTAACAGATGCGTTGGAGATGCTTTCTTAGTCACAGTTCGGAACAAGAAAAGAGTTGG 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TGTTAACAGATGTGTTGGAGATGCTTTCTTAGTCACAGTTCGGAACAAGAAAAGAGTTGG 454
Query 419 CTATACTTACGAGCTTTCCCTTAAAGTTGAGGGAGAGTGGTCATTTGAAGAGAATATGAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CTATACTTACGAGCTTTCCCTTAAAGTTGAGGGAGAGTGGTCATTTGAAGAGAATATGAA 514
Query 479 GAAGGTCAAGGGGAGCCTCGAGATTCCAGAGTTCTCATTCGGCGAGCTTGATGATCTTGA 538
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 515 GAAGGTGAAGGGGAGCCTCGAGATTCCAGAGTTTTCATTCGGCGAGCTTGATGATCTTGA 574
Query 539 GGTGGATGTGAAGCTCAGTGAAGACAAGGATCTTTCCCAGCAGCTGAAGCAGCGGATTAG 598
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 575 GGTGGATGTGAAGCTCAGCGAAGACAAGGAGCTTTCCCAGCAGCTGAAGCAGCGGATTAA 634
Query 599 GTTGGATATGAAGCAGTTCTTGGAGCCTATACGCCTCAAACTCGGCCAGTTTGAACAGGA 658
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 635 GTTGGATATGAAGCAGTTCTTGGAGCCTATACGCCTCAAACTCGGCCTGTTCGAACAGGA 694
Query 659 ACTCAAAGATAGATA-GG----G------AT-T----C-A------GCCATTTTCAGTTA 695
||||||||||||||| || | || | | | ||||||||||||||
Sbjct 695 ACTCAAAGATAGATAAGGATTTGTTCCCTATATTTTTCCAATTTCAGCCATTTTCAGTTA 754
Query 696 G---TAACAAGAACTTGGTAAAACATTGCATCTTACGCTTTTCTGTATCCACATGCTTGT 752
| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 755 GCAGTAACAAGAACTTCGTAAAACATTGCATCTTACGCTTTTCTGTATCCA--TGCTTGT 812
Query 753 TGACTGTCAAAGTTCTA-TTCATCAATCAGATTTTTATCTAATGAGAAATCCTTTTATAG 811
||||||||||||||| | || |||||||||||||| ||||||||||| || |||||||||
Sbjct 813 TGACTGTCAAAGTTC-AGTTGATCAATCAGATTTT-ATCTAATGAGATATACTTTTATAG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5