BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495917
Length=2269
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58130.1 | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) ... 2885 0.0
> AT5G58130.1 | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr5:23521049-23523797 REVERSE LENGTH=2419
Length=2419
Score = 2885 bits (1562), Expect = 0.0
Identities = 2110/2355 (90%), Gaps = 115/2355 (5%)
Strand=Plus/Plus
Query 1 AAAACTGAATCCAACT---G-AAGCAGCAATGGAGGAAAAAAGCAGCAGCGGCGGCGGCG 56
|||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||
Sbjct 3 AAAACTGAATCCAACTGAAGCAAGCAGCAATGGAGG-AAAAA--AGCAGCGGCGGCGGCG 59
Query 57 TTAGGCTTCACGTCGGCGGATTGGGAGAAAGCGTCGGGAGAGATGATCTTCTCAAGATCT 116
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 60 TTAGGCTTCACGTCGGCGGATTAGGAGAAAGCGTCGGGAGAGATGATCTTCTCAAGATAT 119
Query 117 TTTCTCCGATGGGTACCGTCGATGCCGTCGAATTCGTCAGGACCAAAGGTCGTTCCTTTG 176
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTCTCCGATGGGTACCGTCGATGCCGTCGAATTCGTCAGGACCAAAGGTCGTTCCTTTG 179
Query 177 CCTACATCGACTTCTCTCCCTCCTCTACCAATTCCCTCACCAAGCTCTTCTCCACGTATA 236
|||||||||| |||||||| || || |||||||| ||||||||||||||||| || ||||
Sbjct 180 CCTACATCGATTTCTCTCCATCTTCCACCAATTCACTCACCAAGCTCTTCTCTACATATA 239
Query 237 ATGGATGTGTGTGGAAAGGAGGGAGGCT-ACGACTGGAGAAAGCAAAAGAGCATTATCTG 295
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 240 ATGGATGTGTCTGGAAAGGAGGGAGGCTGA-GACTGGAGAAAGCAAAAGAGCATTATCTA 298
Query 296 GCTCGCTTGAAGCGAGAGTGGGAGGCAGCGTCTTCTACCTCTGATAACACCATTAAAGCT 355
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCTCGCTTAAAGCGAGAGTGGGAGGCAGCGTCTTCTACCTCTGATAACACCATTAAAGCT 358
Query 356 CCCTCCGATTCAACACCTTCCACCCACCTTAACATCTTCTTTCCCAGACTCAGAAAGGTG 415
|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 CCCTCCGATTCACCACCTGCCACTCACCTTAACATCTTCTTTCCCAGACTCAGAAAGGTG 418
Query 416 AAACCTATGCCACTTAGTGGAACTGGTAAACATAAGTATAGCTTTCAGCGTGTTCCACTG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 AAACCTATGCCACTTAGTGGAACTGGTAAACATAAGTATAGCTTTCAGCGTGTTCCAGTG 478
Query 476 TCGTCTTCTCTTCCAAAGAGCTTTTGTGATTGTGAAGAGCACTCTAACAACTCTCTCACT 535
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 TCGTCTTCTCTTCCAAGGAGCTTTTGTGATTGTGAAGAGCACTCTAACAGCTCTCTCACT 538
Query 536 CCTCGGGAAACACATCTTCATGATCTGGAAGCGCTTAATGTGGGAAGA-AATGAAGACGA 594
|||||||||| |||||||||||||||||||||| |||||||||||||| || |||| |||
Sbjct 539 CCTCGGGAAATACATCTTCATGATCTGGAAGCGGTTAATGTGGGAAGACAA-GAAGCCGA 597
Query 595 GGTGAATGTTATGAATTCGGTGATGAATAAGCTCTTTGAGAAAAACAACAT-TCCAATCA 653
||||||||||||||| |||||||||||||||||||||||||||||| | || | | |
Sbjct 598 GGTGAATGTTATGAACTCGGTGATGAATAAGCTCTTTGAGAAAAAC-A-ATGT-GGA-CC 653
Query 654 CCGAAGAAGACAATGAGATTGAAGCAGACCAAGATAACCTCATCATCAATGTGGCATCTA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CCGAAGAAGACAATGAGATTGAAGCAGACCAAGATAACCTCATCATCAATGTGGCATCTA 713
Query 714 GTGGGAACGATATGGACTCAGAGCTGGATAAGTTGTCTAGAAAACGGAAATCAATTCTCA 773
|||| || ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 714 GTGGCAATGATATGGACTCAGCGCTGGATATGTTGTCTAGAAAACGGAAATCAATTCTCA 773
Query 774 ACGAAACAGCACCAAGTGGAGAAGGATATAGTGAAGGACGAAAAGGGAACCACATTCATC 833
|| ||| | ||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 774 ACAAAAAAACACCAAGTGAAGAAGGATATAGTGAAGGACGAAAAGGGAACCTTACTCATC 833
Query 834 CAAGTAAGAAAAGGCAAACAATCAGCCTAGAGGAAAGTGGGAGACAGGAATCTTTACAGG 893
|||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 834 CAAGCAAGAATAGGCAAACAATCAGCCTAGAGGAAACTGGAAGACAGGAATCTTCACAGG 893
Query 894 CCATACGTGAAAAGAAGAAGCCTTCTAAAGTGGTACCGGATAAATCATTGGATGAACCGA 953
||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||
Sbjct 894 CCATACGTGGAAAGAAGAAGCCTTCTGAAGTGGTACCAGATAAATCATCGGATGAACCGA 953
Query 954 GCAGAACAACAGA-CGTCAAGCAGTCGATCGACAATATTTCCTGGTCCCAAAAGTCTTCC 1012
||||||||| ||| | | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 954 GCAGAACAAAAGATC-TTGAGCAGTCAATCGACAATATTTCCTGGTCCCAAAAGTCTTCC 1012
Query 1013 TGGAAATCACTAATGGCCAATGGAAACAGCAGTGATTTTAGTGTATCCAGTTTCTTGCCA 1072
||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1013 TGGAAATCACTTATGGCAAATGGGAACAGCAATGATTTTAGTGTATCCAGTTTCTTGCCA 1072
Query 1073 GGTGTTGGCTCAAGTAAAGCAGTACAACCTGCACCACGCAACGCTGATCTTGCTGAGCTT 1132
||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1073 GGTGTTGGCTCCAGTAAAGCAGTACAACCTGCACCACGCAACACTGATCTTGCTGGGCTT 1132
Query 1133 CGTAGCCGAGAAAATTCGAAGGAA-AAGACGAAAAGAAAGCGCGTAACTTCTACGATCAT 1191
| |||||||||||||| ||| ||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1133 CCTAGCCGAGAAAATTTGAA-GAAGAAGACGAAAAGAAAGCGTGTAACGTCTACAATCAT 1191
Query 1192 GGCAGGGGATTTACCTGTGCCAGATGACATAAAGAGGGATGATAGTGACACTATGGTAGA 1251
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct 1192 GGCAGAGGATTTACCTGTATCAGATGACATAAAGAGGGATGATAGTGACACAATGGCAGA 1251
Query 1252 TGACAT--AGA--GA-G---G-GA---TGT----TAGT-----GC---TG---CTGTGGA 1284
|||||| ||| || | | || ||| || | || || || |||
Sbjct 1252 TGACATAGAGAGGGATGATAGTGATGCTGTGGAATATTACACAGCTTGTGAATCTATGGC 1311
Query 1285 AGATGACGCAGCTAGTGACTCTATGGCTGAGAGCGATGATAGTGATGCTGTGGAATATGA 1344
||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 1312 AGATGACACAGCTAGTGACTCTGTGGCTGAGAGGGATGATAGTGATGCTGTGGAAGATGA 1371
Query 1345 CACAGCTATTGACTCTATGGCTGATGACACAGCTAGTGACTCTATGGC--AGA-TGATGC 1401
||||||||||||||||||||| |||||| |||||||||||||| |||| ||| |||||
Sbjct 1372 CACAGCTATTGACTCTATGGCAGATGACCCAGCTAGTGACTCTGTGGCTGAGAGTGATG- 1430
Query 1402 AGCTAGTGACGCTGTGG---CTGAGA--GCGA-TGA---TA--G-TGATG---CTG-T-G 1444
| | | || ||||||| ||| | || | ||| || | |||| | | | |
Sbjct 1431 A--TGGGGATGCTGTGGAAAATGACACTGCTATTGACTCTATGGCCGATGACACAGTTAG 1488
Query 1445 GAA---TATGAC--ACAGC--T-AT--TGACT-CTATGGCAGATGACACAGCTAGTGACT 1493
|| |||| | | ||| | || ||| | | ||| |||||||||||||| |||||
Sbjct 1489 TAACTCTATGGCTGAGAGCGATGATGGTGA-TAATGTGGAAGATGACACAGCTATTGACT 1547
Query 1494 CTGTG-GCAGATGACACAGCAAATGACGATGTAGGTTCAGACGACTCA-GAGTCACTTGC 1551
|| || || ||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 1548 CTATGTGC-GATGACACAGCTAATGACGATGTAGGTTCAGACGACTCAGGA-TCACTTGC 1605
Query 1552 AGATACTGTTATTGACACAAGTGTTGACGCTGTACCCCTGGAATTTGTTGCAAACACCGA 1611
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1606 AGATACTGTTAGTGACACAAGTGTTGAAGCTGTCCCCCTGGAATTTGTTGCAAACACAGA 1665
Query 1612 GGGCGATAGTG-GGAACGGCAAGTCGAATGTGGA-AACGCATGAAAATGGAGTAGAGGAT 1669
||||||||||| || ||||||||||||||||||| || ||||||||||| || |||||||
Sbjct 1666 GGGCGATAGTGTGG-ACGGCAAGTCGAATGTGGAGAA-GCATGAAAATGTAGCAGAGGAT 1723
Query 1670 ATGAATGCGGAAAAGGAAAGCTTAGTTGTGAAGGAAAATGTTGTAGACGAAGAACAGGCA 1729
||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 1724 TTGAATGCAGAAAAGGAAAGCTTAGTCGTGAAGGAAAATGTTGTAGATGAAGAAGAGGC- 1782
Query 1730 GGG-AAAGGACCGGTGAAAGCTTGTAACAAGTCAACAGGAGGTTCTTCATGGCTTCAGAA 1788
||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1783 GGGTAAAGGACCGCTGAAAGCTAGTAACAAGTCAACAGGAGGTTCTTCATGGCTTCAGAA 1842
Query 1789 GGCTTCATGGACTCAGCTGGTTAGCGACAAAAATACTTCTTCATTCAGTATAACTCAACT 1848
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 GGCTTCGTGGACTCAGCTGGTTAGCGACAAAAATACTTCTTCATTCAGTATAACTCAACT 1902
Query 1849 CTTCCCAGATTTAAGTTCTGACAAGGGCGAACCAGCTGGAGTGATCAACAGTGTAG-AAC 1907
|||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||| ||
Sbjct 1903 CTTCCCAGATTTAACTTCAGACAAGGGCGAAGCAGCTGGAGTGATCAACAATGTAGGAAA 1962
Query 1908 GCCAGT-CTC-A-C---AA---GACTGCAAGTGCAATGAAGCAAACAGATTACACATGTA 1958
||||| ||| | | || |||||||||||||||||| |||||||||||| ||| ||
Sbjct 1963 -CCAGTTCTCCAACTCTAACCAGACTGCAAGTGCAATGAAACAAACAGATTACGCATCTA 2021
Query 1959 GCAGTGGTGGTTTCGTGGCTGCGGGAGTCCCTGTGTG-TAGTACCCCTGTGAGAAGTTTA 2017
|||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2022 GCAGCGGTGGTTTTGTGGCTGCGGGAGTCCCTGTG-GATAGTACCCCTGTGAGAAGTTTA 2080
Query 2018 GATGAGAATCGGCAGCGTCTTAATGGTAAGAATTTGAGTGAAGGAGCTAGATTGGGTGCG 2077
|||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 2081 GATGAGAATCGGCAGCGTCTGAATGGTAAGAATGTGAGTGAAGGAGCTAAATTGGGTGCG 2140
Query 2078 AAGAAGA---TAATTAAGAGAAAGGTTGGGTCGGGGGATACTTGCACATTTATGAGAAGC 2134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 AAGAAGAAGATAATTAAGAGAAAGGTTGGGTCGGGGGATACTTGCACATTTATGAGAAGC 2200
Query 2135 TCGACTTCTTTGAAAGAGTGGGCAAAGGCTAAGAAGGCATTGAGTGAGCCTAGGAGAAAG 2194
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2201 TCGACTTCTTTGAAAGAGTGGGCAAAGGCTAAGAAGGCATTGAGTGAGCCCAGGAGAAAG 2260
Query 2195 AAAAATGGTGAAGACTGAGTTAGATTGTAATAAGATGAGAGGCTCTTCAAATTATGTATT 2254
|||||| | ||||| ||||||| || | || | ||||||||||||||||||||||
Sbjct 2261 AAAAATAGCGAAGAATGAGTTA-AT---ACTA---TCAGAGGCTCTTCAAATTATGTATC 2313
Query 2255 CCTCTACAATTTTTG 2269
|||| ||| ||||||
Sbjct 2314 CCTCCACAGTTTTTG 2328
Score = 196 bits (106), Expect = 6e-49
Identities = 122/130 (94%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1371 ACACAGCTAGTGACTCTATGGCAGATGATGCAGCTAGTGACGCTGTGGCTGAGAGCGATG 1430
|||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 1290 ACACAGCTTGTGAATCTATGGCAGATGACACAGCTAGTGACTCTGTGGCTGAGAGGGATG 1349
Query 1431 ATAGTGATGCTGTGGAATATGACACAGCTATTGACTCTATGGCAGATGACACAGCTAGTG 1490
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1350 ATAGTGATGCTGTGGAAGATGACACAGCTATTGACTCTATGGCAGATGACCCAGCTAGTG 1409
Query 1491 ACTCTGTGGC 1500
||||||||||
Sbjct 1410 ACTCTGTGGC 1419
Score = 121 bits (65), Expect = 4e-26
Identities = 76/81 (94%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 1421 GAGAGCGATGATAGTGATGCTGTGGAATATGACACAGCTAT-TGACTCTATGGCAGATGA 1479
||||| |||||||||||||||||||||||| |||||||| | ||| ||||||||||||||
Sbjct 1259 GAGAGGGATGATAGTGATGCTGTGGAATATTACACAGCT-TGTGAATCTATGGCAGATGA 1317
Query 1480 CACAGCTAGTGACTCTGTGGC 1500
|||||||||||||||||||||
Sbjct 1318 CACAGCTAGTGACTCTGTGGC 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112599822435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5