BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495927
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58210.3 | Symbols: | hydroxyproline-rich glycoprotein fami... 651 0.0
> AT5G58210.3 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:23552113-23554346 FORWARD LENGTH=1636
Length=1636
Score = 651 bits (352), Expect = 0.0
Identities = 481/541 (89%), Gaps = 18/541 (3%)
Strand=Plus/Plus
Query 945 GAGACTGA-GAAGGAG-GGAAACTTGACGCACTTAGGTAATCAAGAGTCAAAAGCAGACC 1002
|||||||| ||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1105 GAGACTGATGAA-GAGAGG-AACTTGACGCACTTAGGCAATCAAGAGTCAAAAGCAGACC 1162
Query 1003 ATCTTGAAGGAGCTGCTGTTTCAGCAGATTTTGTGCCTACTGAGACCAGACAAGTTTCAG 1062
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1163 ATCTTGAAGGAGCTGATGTTTCAGCAGATGTTGTGCCTACTGAGACCAGACAAATTTCAG 1222
Query 1063 AGGCAGGAGCCGGTGAGGTGAAAGAGACGGAAGCTGGTGAGGTGAAAGAAACATCAAGTG 1122
|| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1223 AGACAGGAGCCGGTGAGGTGAAAGAGACGGAAACTGGTGAGGTGAAAGAAAGGTCAAGTT 1282
Query 1123 CATGGAGCAACATAATGTCATTTGCAAAAGAATTTACGAACTTTTGGAGAAAAATGTAGA 1182
| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||
Sbjct 1283 CGTGGAGCAACATAATGTCATTTGCGAAAGAATTTGCGAACTTTTGGAGATGAGGGTAGA 1342
Query 1183 TATAGCC-GGAGAGCTTTAGATACGCTCTGGAGGAGGTAGGTAGAGGTGTGTGAAGTACA 1241
||||||| || |||||||||| |||||| ||| | ||||||||||||||||| ||||| |
Sbjct 1343 TATAGCCAGG-GAGCTTTAGACACGCTCAGGAAG-GGTAGGTAGAGGTGTGTAAAGTATA 1400
Query 1242 CTAGTAGA-GCTCTTTTGGTTTGACCATTTTGCGTAAAGGTTTGGTATCTCCCAAGATGT 1300
| |||||| ||| ||||| |||||| |||||||| |||||||||| ||| |||||||||
Sbjct 1401 CCAGTAGAAGCTGTTTTGTTTTGAC-ATTTTGCGCAAAGGTTTGGAATCGACCAAGATGT 1459
Query 1301 CTTAAATCTATACTATTATTGTCCTGCTGGCAATGAGTCTATAGATTAAAACACA-A-CA 1358
||||| |||| |||||||||||||||||||| ||||||||| |||||||||||| | ||
Sbjct 1460 CTTAA-TCTAGACTATTATTGTCCTGCTGGCTATGAGTCTA--GATTAAAACACACAACA 1516
Query 1359 ATTTTAGAGGCTAGTTTTGTGATTGACCATTTTGTACAAACGTTTAGAATCTCCCAAGAT 1418
||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1517 GTTTTAGAGGCTTGTTTTGTGATCGACCATTTTGTACAAAGGTATAGAATCTCCCAAGAT 1576
Query 1419 GTTTAACATGGTAATCAATACAATTATTGG---AGCTCACAATGAGTATGGATCAAAGCT 1475
|||||||||||||||| |||| || ||| | |||||||||||| | ||||||||||
Sbjct 1577 GTTTAACATGGTAATCTATACTATCGTTGTCCTA-CTCACAATGAGTCTAGATCAAAGCT 1635
Query 1476 C 1476
|
Sbjct 1636 C 1636
Score = 649 bits (351), Expect = 0.0
Identities = 458/506 (91%), Gaps = 21/506 (4%)
Strand=Plus/Plus
Query 153 TGACGTACAAGTAGCATACTCTCGAGTGCAGTGATGATTCTGAAGCAGCTGAAACAATTT 212
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TGACGTAGAAGTAGCATACTCTCGAGTGCAGTGATGATTCTGAAGCAGCTGAAACAATTT 219
Query 213 ACCTTTTCTGCTACACGCAGAAA---TG---T------TGATGTTAAACGGCTTGCAAGG 260
||||| |||||||| |||||||| || | ||||||||||||||||||||||
Sbjct 220 ACCTTGTCTGCTACTCGCAGAAATGCTGTTTTCAAAACTGATGTTAAACGGCTTGCAAGG 279
Query 261 TTCTATGGCTCTCCTGCTGTTTGCGAATCTTTAACAACCTCTAAAGCTTAC-AAAAGACT 319
|||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||
Sbjct 280 TTCTATGGCTCTCCTGCTGTTTGCGAATCTTTAACAACATCTAAAA-TTCCCAAAAGACT 338
Query 320 GTCAAGAGATGATCGGCGAGCTTTGGTGGAGTCTTTTGTCAACGAATACAGAGCGAA-TA 378
|||| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 339 CTCAAAAGATGATCGGCGAGCTTTGGTGGAGTCCTTTGTCAACGAATACAGAGC-AACTA 397
Query 379 ATGCTGGTAGATTCCCTTCATTGAGTT-CTACTCGCAAGGAAGTGGGAGGCGGTTATTAC 437
||||||||||||||||||||||| | | |||||| |||| ||||||||||| |||||||
Sbjct 398 ATGCTGGTAGATTCCCTTCATTG-GATGCTACTCACAAGCAAGTGGGAGGCTCTTATTAC 456
Query 438 GTTGTCAGGGAAATCTTTCAAGAGCTGAAACTCAAACCAAAAGCACCTATGCCAATCGTT 497
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 457 ATTGTCAGGGACATCTTTCAAGAGCTGAAACTCAAACCAAAAGCACATATGCCAATCGTA 516
Query 498 GCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCATGTGATGCTTCCTCACACTTTTCT 557
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 517 GCTAAAGCCCTCTCAGAAGTCTCTTCTTCTGTACCAGGTGATGCTTCCTCACACTCCTCT 576
Query 558 CCAGCACCTGTGCCAATCGT--A-GCTAAACCCCTCTCAGAAGTCCCTCCTTCTGTACCA 614
|||||||||||||||| ||| | |||||| |||||||||||||| ||||||||||||||
Sbjct 577 CCAGCACCTGTGCCAACCGTTGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCA 636
Query 615 GATGATGCTTCCTCACACTTCTCTCC 640
| |||||||||||||||||| |||||
Sbjct 637 GCTGATGCTTCCTCACACTTGTCTCC 662
Score = 396 bits (214), Expect = 4e-109
Identities = 273/300 (91%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 479 AGCACCTATGCCAATCGT---TGCTA-AAGCCCTCTCAGAAGTCTCTCCTTCTGTACCAT 534
||||||| |||||||||| || | |||||||||||| |||||||||||||||||||
Sbjct 747 AGCACCTGTGCCAATCGTAGAAGC-AGAAGCCCTCTCAGTAGTCTCTCCTTCTGTACCA- 804
Query 535 G-TGATGCTTCCTCACACTTTTCTCCAGCACCTGTGCCAATCGT---AGCTAAACCCCTC 590
| |||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 805 GCTGATACTTCCTCACACTTCTCTCCAGCACCTGTGCCAATCGTAGAAGCTAAAACCCTC 864
Query 591 TCAGAAGTCCCTCCTTCTGTACCAGATGATGCTTCCTCACACTTCTCTCCTGTGGTTGTT 650
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TCAGAAGTCTCTCCCTCTGTACCAGATGATGCTTCCTCACACTTCTCTCCTGTGGTTGTT 924
Query 651 GAACCTGAGATTCAAGCTGGCAGTCTGGGTATTGAGACAGTAAATGAGCAGAGGCAGGAT 710
||||||||| |||||||||||||| ||| |||||||| || || ||||||||||| ||||
Sbjct 925 GAACCTGAGTTTCAAGCTGGCAGTGTGGATATTGAGATAGGAAGTGAGCAGAGGCCGGAT 984
Query 711 ATAATAGATACTTCTCACTCTATTTCTGATGATGAAAGTAATCTCCAGGGCAACAACCTT 770
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 985 ATAATAGATACTTCTCACTCTAATTCTGATGATGAAAGTAATTTCCAGGGCAACAACCTT 1044
Score = 206 bits (111), Expect = 7e-52
Identities = 151/169 (89%), Gaps = 8/169 (5%)
Strand=Plus/Plus
Query 479 AGCACCTATGCCAATCGTT---GCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCATG 535
||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct 579 AGCACCTGTGCCAACCGTTGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCA-G 637
Query 536 -TGATGCTTCCTCACACTTTTCTCCAGCACCTGTGCCAATCGTAG---CTAAACCCCTCT 591
|||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||
Sbjct 638 CTGATGCTTCCTCACACTTGTCTCCATCACCTGTGCCAATCGTAGAAGCTAAAGCCCTCT 697
Query 592 CAGAAGTCCCTCCTTCTGTACCAGATGATGCTTCCTCACACTTCTCTCC 640
|||||||| ||||||| ||||||| |||| ||||||| |||||||||||
Sbjct 698 CAGAAGTCTCTCCTTCCGTACCAGCTGATACTTCCTCGCACTTCTCTCC 746
Score = 185 bits (100), Expect = 9e-46
Identities = 147/168 (88%), Gaps = 10/168 (6%)
Strand=Plus/Plus
Query 481 CACCTATGCCAATCGT---TGCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCATG-T 536
||||| |||||||||| ||||||||||||||||||||||||||||| |||||| | |
Sbjct 665 CACCTGTGCCAATCGTAGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCCGTACCA-GCT 723
Query 537 GATGCTTCCTCACACTTTTCTCCAGCACCTGTGCCAATCGTAG---CTA-AACCCCTCTC 592
||| ||||||| ||||| ||||||||||||||||||||||||| | | || |||||||
Sbjct 724 GATACTTCCTCGCACTTCTCTCCAGCACCTGTGCCAATCGTAGAAGC-AGAAGCCCTCTC 782
Query 593 AGAAGTCCCTCCTTCTGTACCAGATGATGCTTCCTCACACTTCTCTCC 640
|| |||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 783 AGTAGTCTCTCCTTCTGTACCAGCTGATACTTCCTCACACTTCTCTCC 830
Score = 171 bits (92), Expect = 2e-41
Identities = 113/122 (93%), Gaps = 5/122 (4%)
Strand=Plus/Plus
Query 1 GAACCCTACTTGTTG---TTCCTTCTTCATCGCTCTCCGGTCTGCGCCGTG-TTTT-GCG 55
||||||||||||||| ||||||||| |||||||||||||| |||||||| |||| |||
Sbjct 38 GAACCCTACTTGTTGTTCTTCCTTCTTAATCGCTCTCCGGTCGGCGCCGTGTTTTTCGCG 97
Query 56 TCTCTCTCAAACTCCGATTCTCTATTTTCCGACCAACAGAGAGTAGCGACTGGTTCTTTT 115
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 98 TCTCTCTCAAACTCCAATTCTCTATTTTCCGACCAACAGAGAGTAGCGACTGGTTATTTT 157
Query 116 CT 117
||
Sbjct 158 CT 159
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 771 ACTGAGGAAGAG-GGAAACTTGACGCACTTAGGTAATCAAGAGTCAAAAGCAGACCATCT 829
||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1108 ACTGATGAAGAGAGG-AACTTGACGCACTTAGGCAATCAAGAGTCAAAAGCAGACCATCT 1166
Query 830 TGAAGGAGCTG 840
|||||||||||
Sbjct 1167 TGAAGGAGCTG 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5