BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495929
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58220.1 | Symbols: TTL | transthyretin-like protein | chr5:... 1517 0.0
> AT5G58220.1 | Symbols: TTL | transthyretin-like protein | chr5:23554396-23555881
REVERSE LENGTH=1145
Length=1145
Score = 1517 bits (821), Expect = 0.0
Identities = 929/982 (95%), Gaps = 4/982 (0%)
Strand=Plus/Plus
Query 1 AAAAATGGCGATGGAGATCGGAGAAGACGAATGGAAGGTTTGCTGTGGAAGCTCCGAATT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 17 AAAAATGGCGATGGAGATCGGAGAAGATGAATGGAAGGTTTGCTGTGGAAGCTCCGAATT 76
Query 61 CGCGAAGCTGATGGAGATGTCTGGTCCGTTAACTTCAGAAGAAGCAATCTGGACTGCCAG 120
|||||||| |||| | |||||| ||||||||||| |||||||||| | ||||| ||
Sbjct 77 CGCGAAGCAGATGTCTACGTCTGGACCGTTAACTTCTCAAGAAGCAATATATACTGCAAG 136
Query 121 AGACATCTGGTTCAACCTAGTTAATGTGACAGATTGGCTTGAAGCTTTCTCTGCTCATCC 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AGACATCTGGTTCAACCAAGTTAATGTGACAGATTGGCTTGAAGCTTTCTCTGCTCATCC 196
Query 181 TCAGATTGGGAATACTCCTTCACCTTCTATCAACTCCGATTTTGCTCGTCGGAGCGTATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TCAGATTGGGAATACTCCTTCACCTTCTATCAACTCCGATTTTGCTCGTCGGAGCGTATC 256
Query 241 AGAACAGTCAACGGCCTTTGCCACAACTTCTGCTTCTGCTTTACAGGAGCTTGCCGATTG 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 257 AGAACAGTCAACCGCCTTTGCCACAACTTCTGCTTCTGCTTTACAGGAGCTTGCCGAATG 316
Query 301 GAATGTACGCTACAAACAA-AAGTTTGGCTTTATCTTCATTATCTGCGCCTCTGGTAGGA 359
|||||||| |||||| || ||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 317 GAATGTACTTTACAAA-AAGAAGTTTGGCTTTATCTTCATTATTTGCGCTTCTGGCAGGA 375
Query 360 CTCATGCTGAGATGCTCCATGAGTTAAAGGAAAGGTATGAAAATAGGCCGATAGTGGAGC 419
|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 376 CTCACGCTGAGATGCTCCATGCGTTAAAGGAAAGGTATGAAAATAGGCCAATAGTGGAGC 435
Query 420 TTGAGAATGCTGCTATGGAACAAATGAAAATAACAGAGCTACGAATTGCTAAGCTCTACT 479
|||||| ||||||||||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 436 TTGAGATTGCTGCTATGGAACAAATGAAAATAACAGAGCTACGAATGGCAAAGCTGTTCT 495
Query 480 CCGATAAGGCTAGAGTTGTATCTGAAACTGACAGCTCTAGCTCTCCTATTTCCACAAAAC 539
|||||||||||| |||| |||| |||||||||||||||||||||||| |||| |||||||
Sbjct 496 CCGATAAGGCTAAAGTTATATCAGAAACTGACAGCTCTAGCTCTCCTGTTTCAACAAAAC 555
Query 540 CTCAAGATCGTCTGAGAATCATTGGAGGGCATTTGAATGTTGCAGCTGAAGCAAAAACTC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 556 CTCAAGATCGTCTGAGAATCATTGGAGGGCATTTGAATGTTGCAGCTGAAGCAAAAGCTC 615
Query 600 CCAAGAGAAGTAGGCCACCAATCACGACTCATGTCTTAGACGTCTCACGTGGTGCTCCAG 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CCAAGAGAAGTAGGCCACCGATCACGACTCATGTCTTAGACGTCTCACGTGGTGCTCCAG 675
Query 660 CTGCAGGTGTTGAAGTGCACTTAGAAGTGTGGAGTGGTACTACCGGTCCTTCCTTTGGTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 676 CTGCAGGTGTTGAAGTGCACTTAGAAGTGTGGAGTGGTACTACCGGTCCTTCCTTTGTTC 735
Query 720 ATGGAGGTGGTGGTGTCTGGTCCAGTGTGGGCACTTCAGCTACTGATCA-AGATGGGCGC 778
||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 736 ATGGAGGTGGTGGGGTCTGGTCCAGTGTGGGCACATCAGCTACTGAT-AGAGATGGGCGC 794
Query 779 AGTGGGCCACTGATGGATTTGGTTGAGGCTTTGAATCCAGGGACATATAGAATAAGCTTC 838
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 795 AGTGGGCCACTGATGGATTTGGTTGACGCTTTGAATCCAGGGACATATAGGATTAGCTTC 854
Query 839 AACACTGCAAAGTATTGCCCAGGCTGCTTCTTTCCCTATGTTTCGATTGTATTTCAGGTT 898
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 855 GACACTGCAAAGTATTCCCCAGGCTGCTTCTTTCCCTATGTTTCCATTGTATTTCAGGTT 914
Query 899 ACAGAATCTCAGAAATGGGAGCATTTCCATGTCCCACTGTTGCTTTCACCATTTTCTTTC 958
|||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 915 ACAGAATCACAGAAATGGGAGCATTTCCATGTCCCACTGTTGCTTGCACCTTTTTCTTTC 974
Query 959 ACCACATACCGTGGGAGCTAGA 980
|||||||||||||||||||||
Sbjct 975 TCCACATACCGTGGGAGCTAGA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5