BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495932
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 re... 2300 0.0
> AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40
repeat-like superfamily protein | chr5:23556012-23558245 FORWARD
LENGTH=1626
Length=1626
Score = 2300 bits (1245), Expect = 0.0
Identities = 1345/1393 (97%), Gaps = 8/1393 (1%)
Strand=Plus/Plus
Query 21 TAAAGAGATCTGTTTTAGGGTTTTGCTTTGTTCTTGTGGCGGGAATAACAAAGACATCGC 80
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 37 TAAAGAGATCTGTTTTAGGGTTTTGCCTTGTTCTTGTGGCGGGAATAACAAAGACATCGC 96
Query 81 CGAGATGGGGAAAGACGAAGAGGAAATGCGAGGTGAGATTGAGGAGCGACTAATCAATGA 140
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 97 CGATATGGGGAAAGACGAAGAGGAAATGCGAGGTGAGATCGAGGAGCGACTAATCAATGA 156
Query 141 AGAGTACAAGATCTGGAAGAAGAACACTCCTTTCCTCTACGATCTCGTTATTACTCACGC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 AGAGTACAAGATCTGGAAGAAGAACACTCCTTTCCTCTACGATCTCGTTATTACTCACGC 216
Query 201 CCTCGAGTGGCCTTCACTTACTGTTGAATGGCTTCCTGACCGTGAAGAACCTTCCGGCAA 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 217 TCTCGAGTGGCCTTCACTTACTGTTGAATGGCTTCCTGACCGTGAAGAACCTTCCGGTAA 276
Query 261 AGACTACTCCGTTCAGAAGATGATTCTCGGTACCCATACCTCCGAGAACGAGCCTAATTA 320
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 277 AGACTACTCCGTTCAGAAGATGATTCTCGGTACCCATACCTCCGAGAGCGAGCCCAATTA 336
Query 321 CTTGATGCTAGCACAAGTTCAGCTTCCTCTTGACGATACCGAGAGTGAAGCTCGTCAGTA 380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTTGATGCTAGCCCAAGTTCAGCTTCCTCTTGACGATACCGAGAGTGAAGCTCGTCAGTA 396
Query 381 CGATGATGACCGCTCTGAATTTGGTGGCTTTGGCTGTGCTACTGGAAAGGTGCAAATTAT 440
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 397 CGATGATGACCGCTCTGAATTTGGTGGCTTTGGCTGTGCAACTGGAAAGGTACAAATTAT 456
Query 441 CCAACAGATTAATCATGATGGCGAGGTTAATCGAGCTCGCTACATGCCCCAAAACCCATT 500
||| ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 457 CCAGCAGATAAATCATGATGGTGAGGTTAATCGAGCTCGCTATATGCCTCAAAACCCTTT 516
Query 501 CATAATTGCTACCAAGACAGTTAATGCGGAGGTCTATGTTTTCGATTACAGTAAGCATCC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CATAATTGCTACCAAGACAGTTAATGCGGAGGTCTATGTTTTCGATTACAGTAAGCATCC 576
Query 561 ATCTAAGCCTCCTCTTGATGGGGCTTGTAATCCTGATTTAAAGCTTAGAGGTCACAGTTC 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 577 ATCTAAGCCTCCTCTTGATGGGGCTTGTAATCCTGATTTAAAGCTTAGAGGTCACAGCTC 636
Query 621 TGAGGGATATGGTCTCTCTTGGAGTAAGTTCAAGCAGGGTCATTTGCTCAGCGGCTCTGA 680
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 637 TGAGGGATATGGTCTCTCTTGGAGTAAGTTCAAGCAGGGTCATTTGCTTAGTGGCTCTGA 696
Query 681 TGATGCTCAGATCTGCTTGTGGGATATTAACGCTACTCCTAAAAACAAATCCCTTGACGC 740
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 697 TGATGCTCAGATCTGCTTGTGGGATATTAACGCTACTCCTAAAAACAAATCTCTGGACGC 756
Query 741 TCAGCAGATCTTTAAGGCTCATGAAGGCGTTGTGGAAGATGTTGCATGGCATCTGAGACA 800
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 757 TCAGCAGATTTTTAAGGCTCATGAAGGGGTTGTGGAAGATGTTGCATGGCATCTGAGACA 816
Query 801 TGAATACCTGTTTGGATCCGTTGGAGATGACCAATACCTTCTTATATGGGATCTTCGTTC 860
||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 817 TGAGTACCTGTTTGGATCAGTTGGAGATGACCAATACCTTCTCATATGGGATCTGCGTTC 876
Query 861 TCCTTCTGCCAGTAAACCAGTACAGTCTGTGGTTGCTCATTCGATGGAGGTTAACTGCTT 920
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TCCATCTGCCAGTAAACCAGTACAGTCTGTGGTTGCTCATTCGATGGAGGTTAACTGCTT 936
Query 921 AGCCTTCAATCCATTTAATGAGTGGGTTGTGGCAACAGGATCAACTGACAAGACTGTTAA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AGCCTTCAATCCATTTAATGAGTGGGTTGTGGCAACAGGATCAACTGACAAGACTGTTAA 996
Query 981 ATTATTCGATCTACGGAAGCTAAGCACCGCTCTTCACACATTTGATAGCCACAAAGAGGA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ATTATTCGATCTACGGAAGCTAAGCACCGCTCTTCACACATTTGATAGCCACAAAGAGGA 1056
Query 1041 GGTTTTCCAAGTTGGTTGGAACCCAAAGAACGAGACTATCTTAGCCTCATGTTGCCTTGG 1100
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1057 GGTTTTTCAAGTTGGTTGGAACCCAAAGAACGAGACTATTTTAGCTTCATGTTGCCTTGG 1116
Query 1101 TAGAAGGCTTATGGTTTGGGACCTTAGCAGGATCGATGAGGAGCAGACACTGGAGGATGC 1160
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 1117 TAGAAGACTTATGGTTTGGGACCTTAGCAGGATCGATGAGGAACAGACAGTGGAGGACGC 1176
Query 1161 AGAAGACGGTCCACCTGAGCTGCTGTTTATTCACGGTGGTCACACTAGCAAAATTTCAGA 1220
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AGAAGACGGCCCACCTGAGCTGCTGTTTATTCACGGTGGTCACACTAGCAAAATTTCAGA 1236
Query 1221 TTTCTCGTGGAACCCTTGCGAAGATTGGGTTATCTCCAGTGTTGCTGAGGACAACATACT 1280
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1237 TTTCTCGTGGAACCCTTGTGAAGATTGGGTTATTTCCAGTGTTGCTGAGGACAACATACT 1296
Query 1281 CCAAATATGGCAAATGGCTGAGAACATCTATCATGATGAGGATGACGCTCCAGGTCCAGG 1340
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1297 CCAAATATGGCAAATGGCTGAAAACATCTATCATGATGAGGATGACGCTCCAGG----GG 1352
Query 1341 GGAAGAACCATCAAAAGCTTCTTAGCTTATTATTTAGTATCCAAAGCG-AGCTGATCTTA 1399
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 1353 --AAGAACCATCAAAAGCTTCTTAGCTTGTTATTTAGTATCCAAAGCGCA-CTGATCTTA 1409
Query 1400 TGGGACAGTATTT 1412
|||||||||||||
Sbjct 1410 TGGGACAGTATTT 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5