BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495943
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58310.1 | Symbols: ATMES18, MES18 | methyl esterase 18 | ch... 1502 0.0
AT5G58300.1 | Symbols: | Leucine-rich repeat protein kinase fa... 115 7e-25
> AT5G58310.1 | Symbols: ATMES18, MES18 | methyl esterase 18 |
chr5:23574992-23576084 REVERSE LENGTH=1004
Length=1004
Score = 1502 bits (813), Expect = 0.0
Identities = 924/977 (95%), Gaps = 10/977 (1%)
Strand=Plus/Plus
Query 1 AAATATCACACTAACTACAAAAGATAGTGCAAGGAATATGATGTATGAGAAGAAGATTAG 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||
Sbjct 16 AAATATCACACTAACTACAAAAGATAGTGCAAGGAATGTGATGTACGAGAAGAGGATTAA 75
Query 61 AGATGACTGAGCATCATTTTGTGTTTGTGCATGGAGCAGGTCATGGAGGATGGTGTTGGT 120
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 76 AGATGAGTGAGCATCATTTTGTGTTTGTGCATGGTGCAGGGCATGGAGGATGGTGTTGGT 135
Query 121 ACAAGCTCGCCAATTCACTGAGGGAGAATGGACATAAGGCTACATGTATCGACCTCAAGG 180
||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 136 ACAAGCTGGCTAATTCACTGAGGGATAATGGACATAAGGCTACATGTATAGACCTCAAGG 195
Query 181 GCGCTGGGATCAACCAAACTGATCCAAATACTGTCTCTTCTTTGGATGACTACGACGAGC 240
| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 196 GTGCTGGTATCAACCCAACTGATCCAAACACTGTCTCTTCTTTGGATGACTACGACGAGC 255
Query 241 CTCTCTATGCCTTCCTCTCCCAACTTCCCATCGATCAAAAGGTCATTCTTGTGAGCCACA 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 256 CTCTCTATGCCTTCCTCTCCCAACTTCCCAACGATCAAAAGGTCATTCTTGTGAGCCACA 315
Query 301 GCGTTGGAGGAGGGAGCATGACTGCTGCCATGTGCCTCTTTCCTTCCAAAGTTTCCTTGG 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 316 GCGTTGGAGGAGGGAGCATGACGGCTGCCATGTGCCTCTTTCCTTCCAAAGTTTCCTTGG 375
Query 361 CGGTTTTCGTCGCAGCTGCCATGGTCAAACCTGGTACCTTGATTCCCGAAAGACTCAAAA 420
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 376 CGGTTTACGTCGCAGCAGCCATGGTCAAACCTGGTACCTTGATTCCTGAAAGACTCAAAA 435
Query 421 ATGTAATGAAGATATGTTCAGGATTGATAGAGGAGGAAACTGAGAAGATATGGGACTATA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 436 ATGTAATGAAGATATGTTCAGGATTGATAGAGGAGGAAACTGAGAAGATATGGGACTTTA 495
Query 481 CTTTTGGAAACGGACCAGAAAATCTCCCAACAAGCATCATGATGAAACCTGAGTATGTTC 540
|||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTTTCGGAAATGGACCACAAAATCTCCCAACAAGCATCATGATGAAACCTGAGTATGTTC 555
Query 541 GGGACAAGTTTTACAACGAGAGTCCCATGGAGGATTACACACTGGCTACAACGCTTCTGC 600
|||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct 556 GGGACAAGTTTTACAACGAGAGCCCCATGGAGGATTACACACTGGCAACCACACTTCTGC 615
Query 601 GTCCGGCCCCTGTCATGGCATTCGTAGGCATAATGGATATTCCGAAAGCTCCAGAGGCTG 660
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 616 GTCCGGCCCCTGTCATGGCATTCATAGGCATAATGGATATTCCGGGAGCTCCAGAGACTG 675
Query 661 ACAAAACCCCAAGGGTGTACGTGAAGACAGGGAAGGACCATTTGTTCGAACCAGTTCTTC 720
|||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 676 ACAAAATCCCAAGAGTGTACGTGAAGACAGGCAAGGACCATTTGTTCGAACCAGTTCTTC 735
Query 721 AAGAGGTAATGTTGGCCCTGTGGCCTCCTGCTCAGACCTTCCTTCTTCCGGACAGTGATC 780
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 736 AAGAGGTAATGTTGGCCCTGTGGCCTCCTGCTCACACCTTCCTTCTTCCGGACAGTGACC 795
Query 781 ACTCTGCTTTTTTCTCCCAACCTCAAGAACTCTATCAATTCCTCCTTCAAGCAGCCTCAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ACTCTGCTTTTTTCTCCCAACCTCAAGAACTCTATCAATTCCTCCTTCAAGCAGCCTCAT 855
Query 841 CTCTTTCTCCCTGATTCCTCTTTATATGTCTCTCTGGAACTCTTCCAAATCCATCTTTTG 900
||||||||||||||| | || || ||||||||||||||||| ||||||||||||||
Sbjct 856 CTCTTTCTCCCTGATA--T-TT-AT--GTCTCTCTGGAACTCTTTTAAATCCATCTTTTG 909
Query 901 GATACTTG----GCTTGCATAAAACTGAATCATATTCATATATATTATGAGATACATAGA 956
||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 910 GATACTTACTTAGCTTGCATAAAACTGAATCATATTCATATATATTATGAGATACAGAAA 969
Query 957 AAGGAGCCTACAATAAT 973
|||||||||||||||||
Sbjct 970 AAGGAGCCTACAATAAT 986
> AT5G58300.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:23571879-23575084 FORWARD LENGTH=2387
Length=2387
Score = 115 bits (62), Expect = 7e-25
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 903 TACTTGGCTTGCATAAAACTGAATCATATTCATATATATTATGAGATACATAGAAAGGAG 962
||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2383 TACTTAGCTTGCATAAAACTGAATCATATTCATATATATTATGAGATACAGAAAAAGGAG 2324
Query 963 CCTACAATAAT 973
|||||||||||
Sbjct 2323 CCTACAATAAT 2313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5