BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495954

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58375.1 | Symbols:  | Methyltransferase-related protein | c...   689    0.0  


> AT5G58375.1 | Symbols:  | Methyltransferase-related protein | 
chr5:23596272-23596960 FORWARD LENGTH=610
Length=610

 Score =  689 bits (373),  Expect = 0.0
 Identities = 426/451 (94%), Gaps = 6/451 (1%)
 Strand=Plus/Plus

Query  38   AAAAACTGGAAAAAGCAAATCAAGAAAAGAGAAGAAGAAGCAGATGTGTCCATTAAGGCT  97
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  55   AAAAACTGGAAAAAGCAAATCAAGAAAAGAGAAGAAGAAGCAGATGTGTCCGTTAAGGCT  114

Query  98   TATCCTCATATTCCTTTCGGCGACTCTCGCTGGGTTCTTCGTCCTCCAGAAGCTCAACTC  157
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  115  TATCCTCATATTCCTTTCAGCGACTCTCGCTGGCTTCTTCGTCCTCCAGAAGCTCAACTC  174

Query  158  TACCTCTGACGATCCTCTCGACGATTCCTTCACCGACGCTGAACCCGCCGACGACGACTC  217
            ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct  175  TACCTCTGACGATCCTCTCGATGATTCCTTCACCGACGCTGAACACGCCGACGACGATTC  234

Query  218  AGTCTCCGGATTCTCCAAGGTGGGAATGGCAATGAAGTCTGGATTTTGGACATGCGTTGA  277
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  AGTCTCTGGATTCTCCAAGGTGGGAATGGCAATGAAGTCTGGATTTTGGACATGCGTTGA  294

Query  278  CATGGCAAGTGGTCGCTATCTCTGGAACAATCTCTCTTCTGTTTCCAAACGCTCTTCTTG  337
            ||||||||||||||||||||||||||||||||||| |||   | ||||||||||||||||
Sbjct  295  CATGGCAAGTGGTCGCTATCTCTGGAACAATCTCTGTTCAAATGCCAAACGCTCTTCTTG  354

Query  338  AGTTTTGTTACTCTCTCTATCTGTCTCT--ATTGTCTGTAACTGTGTAATTGAATTGCAA  395
            ||||||||||||||||  ||||||||||  ||||||||||||||| |||||||| |||||
Sbjct  355  AGTTTTGTTACTCTCT--ATCTGTCTCTCTATTGTCTGTAACTGTTTAATTGAACTGCAA  412

Query  396  TGGACGGCACCAAATTCACATATTGTCTCTGTACTCTA--CTATAGATCTTGTCTTCACT  453
            | |||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||
Sbjct  413  TCGACGGCACCAAATTTACATATTGTCTCTGTACTATATACTATAGATCTTGTCTTCACT  472

Query  454  ACTAAATCTCAATAAAGTCCAAGTCTTTATC  484
            ||||||||||||||||||| ||| |||||||
Sbjct  473  ACTAAATCTCAATAAAGTCGAAGCCTTTATC  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25368244235


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5