BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495957

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   342    1e-93


> AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ribosomal protein S5 domain 2-like superfamily protein 
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; 
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI 
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 228/248 (92%), Gaps = 6/248 (2%)
 Strand=Plus/Plus

Query  80   GAGGCGTGTTTTGTTGCTTGAGTATGACCAAAGTTGAAAGGGAGTATGAAACGATACTGA  139
            ||||| |||||||| ||||  | | ||  ||||||||||  |||||||||||||||||||
Sbjct  212  GAGGCTTGTTTTGTCGCTT--G-A-GA--AAAGTTGAAAAAGAGTATGAAACGATACTGA  265

Query  140  AAAGGACGCTACAGAATATTTGTGTTTTGACAGTTGTTACAAATACCGCCACCTCAGTGA  199
            ||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct  266  AAAGGACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGA  325

Query  200  TAATTCAGGTTGTACATGATGGTGGTTATGTATCGTCTTTATGTTCCTTGCACCTTGGTA  259
            | ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct  326  TTATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTA  385

Query  260  AACATTTACTGATGTTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGT  319
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  AACATTTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGT  445

Query  320  ATTTATAG  327
            ||||||||
Sbjct  446  ATTTATAG  453


 Score =  115 bits (62),  Expect = 2e-25
 Identities = 70/74 (95%), Gaps = 0/74 (0%)
 Strand=Plus/Plus

Query  2    GGATACAAAAGTTCAATCTGCACAATACGGACCTAAAGCAGGAAAGAAGAAGAACGAAAA  61
            |||||||||||||| |||||| |||||||||||||||||| ||| |||||||||||||||
Sbjct  69   GGATACAAAAGTTCTATCTGCGCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAA  128

Query  62   TGCTGAGAAGGCTT  75
            ||||||||||||||
Sbjct  129  TGCTGAGAAGGCTT  142



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5