BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495957 Length=327 Score E Sequences producing significant alignments: (Bits) Value AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 342 1e-93 > AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:2952610-2953208 REVERSE LENGTH=453 Length=453 Score = 342 bits (185), Expect = 1e-93 Identities = 228/248 (92%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 80 GAGGCGTGTTTTGTTGCTTGAGTATGACCAAAGTTGAAAGGGAGTATGAAACGATACTGA 139 ||||| |||||||| |||| | | || |||||||||| ||||||||||||||||||| Sbjct 212 GAGGCTTGTTTTGTCGCTT--G-A-GA--AAAGTTGAAAAAGAGTATGAAACGATACTGA 265 Query 140 AAAGGACGCTACAGAATATTTGTGTTTTGACAGTTGTTACAAATACCGCCACCTCAGTGA 199 ||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||| Sbjct 266 AAAGGACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGA 325 Query 200 TAATTCAGGTTGTACATGATGGTGGTTATGTATCGTCTTTATGTTCCTTGCACCTTGGTA 259 | ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| Sbjct 326 TTATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTA 385 Query 260 AACATTTACTGATGTTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGT 319 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 AACATTTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGT 445 Query 320 ATTTATAG 327 |||||||| Sbjct 446 ATTTATAG 453 Score = 115 bits (62), Expect = 2e-25 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2 GGATACAAAAGTTCAATCTGCACAATACGGACCTAAAGCAGGAAAGAAGAAGAACGAAAA 61 |||||||||||||| |||||| |||||||||||||||||| ||| ||||||||||||||| Sbjct 69 GGATACAAAAGTTCTATCTGCGCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAA 128 Query 62 TGCTGAGAAGGCTT 75 |||||||||||||| Sbjct 129 TGCTGAGAAGGCTT 142 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15231127947 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5