BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495959
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58420.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 1640 0.0
AT5G07090.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 1051 0.0
AT2G17360.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 1000 0.0
> AT5G58420.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr5:23619506-23621094 FORWARD LENGTH=1080
Length=1080
Score = 1640 bits (888), Expect = 0.0
Identities = 972/1013 (96%), Gaps = 4/1013 (0%)
Strand=Plus/Plus
Query 1 ACAAGTAGTTCGGATCAGAGCTACGCTTGCAAATCTCAAAACATGGCGAGGGGTTTGAAG 60
||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 52 ACAGGTAGTTCGGATCGGAGCTACGCTTGCAAAACTCAAAACATGGCGAGGGGTTTGAAG 111
Query 61 AAGCATTTGAAGAGGATTAATGCGCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCA 120
|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 112 AAGCATCTGAAGAGGCTTAATGCGCCTAAGCATTGGATGCTTGACAAACTTGGTGGTGCA 171
Query 121 TTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCGAGGGAGTGCCTTCCCCTTGTCCTT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 172 TTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCAAGGGAGTGCCTTCCCCTCGTCCTT 231
Query 181 ATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACCGTGAAGTGATTTCTATCTTGATG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 232 ATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACCGTGAAGTGATTTCAATCTTGATG 291
Query 241 CAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACTGACAAGACCTACCCTGCTGGTTTC 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 292 CAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACGGACAAGACCTACCCTGCTGGTTTC 351
Query 301 ATGGATGTTGTGTCTATCCCTAAGACCAATGAGAACTTCCGTCTTCTCTATGATACCAAG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATGGATGTTGTGTCTATCCCCAAGACCAATGAGAACTTCCGTCTTCTCTATGATACCAAG 411
Query 361 GGCCGTTTCCGTCTCCACTCCATCAGGGATGAGGAAGCACAGTTCAAGCTTTGCAAGGTC 420
|| |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct 412 GGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAAGCAAAGTTCAAACTTTGCAAGGTT 471
Query 421 CGATCTATCCAGTTTGGACAGAAGGGCATTCCATT-CCTGAACACATACGATGGTCGCAC 479
||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||
Sbjct 472 CGATCTATCCAGTTTGGACAGAAAGGCATTCC-TTACCTGAACACTTACGATGGTCGCAC 530
Query 480 CATCCGTTACCCTGACCCTCTCATCAAGCCTAATGACACCATCAAGCTCGACCTTGAGGC 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CATCCGTTACCCTGACCCGCTCATCAAGCCTAATGACACCATCAAGCTCGACCTTGAGGC 590
Query 540 CAACAAGATTGTGGAGTTCATCAAGTTTGATGTGGGCAATGTTGTGATGGTCACAGGAGG 599
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 591 CAACAAGATTGTCGAGTTCATCAAGTTTGATGTTGGCAATGTTGTGATGGTTACAGGAGG 650
Query 600 TAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGTGAGAAGCATAAGGGAAGCTTTGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGTGAGAAGCATAAGGGAAGCTTTGA 710
Query 660 GACAATCCACATCCAAGACTCAACAGGACATGAGTTTGCAACAAGGTTGGGGAATGTGTT 719
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 711 GACAATCCACATCCAAGATTCAACAGGACATGAGTTTGCAACAAGGTTGGGTAATGTGTA 770
Query 720 CACCATTGGCAAAGGTACAAAGCCATGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCT 779
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 771 CACCATTGGCAAAGGAACAAAGCCATGGGTGTCTCTTCCCAAGGGCAAAGGTATCAAGCT 830
Query 780 GACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTGGTCAACAGGCTGCTTAATTTTGTGA 839
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 831 GACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTAGTCAACAGGCTGCTTAATTTTGTGA 890
Query 840 TTTCCAGTTCTCTATATTATGCTTCCTTAGACGTTTCATATTTCCTAGACTCACTTCGTT 899
||| ||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 891 TTTTCAGTTCT-T-TGTTATGCTTCTTTAGACGTTTCATATTTCCTAGACTCACTTCGTT 948
Query 900 TCTTTTGGTACTCTGCTCAGTTTTGAAACTTCTGTTATATTATTTATTTCAAGAGTTAAA 959
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 949 TCTTTTGGTACTCTGCTCAGTTTTGAAACTTCTCTTATATTATTTATTTCAAGAGTTAAA 1008
Query 960 AACTTCAAACATCCATTGTGTTCTCTCTTGTTTTCTACTATCTTCAAGAGTTG 1012
||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1009 AACATCAAATATCCATTGTGTCCTCTCTTGTTTTTTACTATCTTCAAGAGTTG 1061
> AT5G07090.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr5:2202380-2204077 FORWARD LENGTH=1091
Length=1091
Score = 1051 bits (569), Expect = 0.0
Identities = 719/793 (91%), Gaps = 4/793 (1%)
Strand=Plus/Plus
Query 39 AAACATGGCGAGGGGTTTGAAGAAGCATTTGAAGAGGATTAATGCGCCGAAGCATTGGAT 98
||||||||| || || |||||||||||| | |||||| | ||||| || |||||||||||
Sbjct 27 AAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGCTCAATGCTCCTAAGCATTGGAT 86
Query 99 GCTTGACAAACTTGGTGGTGCATTTGC-CCCAAAGCCGTCTTCTGGACCACATAAGTCGA 157
||||||||||||||||||||| || || |||||| || ||||||||||| || |||||||
Sbjct 87 GCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA-CCATCTTCTGGACCTCACAAGTCGA 145
Query 158 GGGAGTGCCTTCCCCTTGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTT-ACCTAC 216
||||||| ||||| |||||||| ||||||||||||||||||||||||||| || || |||
Sbjct 146 GGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAACAGGTTGAAGTATGCT-TTGACTTAC 204
Query 217 CGTGAAGTGATTTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACT 276
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 205 CGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTCAGGACT 264
Query 277 GACAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCTAAGACCAATGAGAAC 336
|||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 265 GACAAGACTTACCCTGCTGGTTTCATGGATGTTGTATCCATCCCCAAGACCAATGAGAAC 324
Query 337 TTCCGTCTTCTCTATGATACCAAGGGCCGTTTCCGTCTCCACTCCATCAGGGATGAGGAA 396
|||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 325 TTCCGTCTTCTCTACGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAA 384
Query 397 GCACAGTTCAAGCTTTGCAAGGTCCGATCTATCCAGTTTGGACAGAAGGGCATTCCATTC 456
||| ||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |
Sbjct 385 GCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATTCCATAC 444
Query 457 CTGAACACATACGATGGTCGCACCATCCGTTACCCTGACCCTCTCATCAAGCCTAATGAC 516
|||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 445 CTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCAAATGAC 504
Query 517 ACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTGGAGTTCATCAAGTTTGATGTGGGC 576
||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 505 ACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGACGTGGGT 564
Query 577 AATGTTGTGATGGTCACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGT 636
|| ||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 565 AACGTTGTGATGGTGACTGGAGGCAGAAACAGAGGGCGTGTGGGTGTGATTAAGAACCGT 624
Query 637 GAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGACTCAACAGGACATGAGTTT 696
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 625 GAAAAGCATAAGGGAAGCTTTGAGACAATCCACATTCAAGACTCAACAGGGCATGAGTTT 684
Query 697 GCAACAAGGTTGGGGAATGTGTTCACCATTGGCAAAGGTACAAAGCCATGGGTGTCTCTT 756
|| ||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||
Sbjct 685 GCCACAAGGTTGGGGAATGTGTACACAATCGGCAAAGGAACAAAGCCATGGGTGTCTCTT 744
Query 757 CCCAAGGGTAAAGGTATTAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTGGT 816
|| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 745 CCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCCAGGAAGAGACTTGCTTCC 804
Query 817 CAACAGGCTGCTT 829
|| || |||||||
Sbjct 805 CAGCAAGCTGCTT 817
> AT2G17360.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr2:7546480-7548313 FORWARD LENGTH=1079
Length=1079
Score = 1000 bits (541), Expect = 0.0
Identities = 707/789 (90%), Gaps = 4/789 (1%)
Strand=Plus/Plus
Query 39 AAACATGGCGAGGGGTTTGAAGAAGCATTTGAAGAGGATTAATGCGCCGAAGCATTGGAT 98
||||||||| || |||||||||||||||||||||||| | ||||| || |||||||||||
Sbjct 115 AAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGAT 174
Query 99 GCTTGACAAACTTGGTGGTGCATTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCGAG 158
|||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||
Sbjct 175 GCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAG 234
Query 159 GGAGTGCCTTCCCCTT-GTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACC 217
|||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 235 GGAGTG-TTTACCCTTGGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTGACATACA 293
Query 218 GTGAAGTGATTTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACTG 277
| ||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 294 GAGAAGTGATTTCGATCTTGATGCAAAGGCATATTCAGGTTGATGGGAAAGTGAGGACTG 353
Query 278 ACAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCTAAGACCAATGAGAACT 337
||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 354 ACAAGACTTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCCAAAACAAATGAGAACT 413
Query 338 TCCGTCTTCTCTATGATACCAAGGGCCGTTTCCGTCTCCACTCCATCAGGGATGAGGAAG 397
|||||||| | ||||| |||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 414 TCCGTCTTTTGTATGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAGG 473
Query 398 C-ACAGTTCAAGCTTTGCAAGGTCCGATCTATCCAGTTTGGACAGAAGGGCATTCCATTC 456
| | |||||||||||||||| || |||| ||||| ||||| |||||||| ||||| | |
Sbjct 474 CTA-AGTTCAAGCTTTGCAAAGTGAGATCGATCCAATTTGGTCAGAAGGGTATTCCCTAC 532
Query 457 CTGAACACATACGATGGTCGCACCATCCGTTACCCTGACCCTCTCATCAAGCCTAATGAC 516
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 533 TTGAACACATATGATGGTCGCACCATCCGTTATCCTGACCCGCTCATCAAGCCTAACGAC 592
Query 517 ACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTGGAGTTCATCAAGTTTGATGTGGGC 576
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 593 ACCATCAAGCTCGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGC 652
Query 577 AATGTTGTGATGGTCACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGT 636
|| || || |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 653 AACGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGT 712
Query 637 GAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGACTCAACAGGACATGAGTTT 696
||||| || ||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 713 GAGAAACACAAGGGTAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTT 772
Query 697 GCAACAAGGTTGGGGAATGTGTTCACCATTGGCAAAGGTACAAAGCCATGGGTGTCTCTT 756
|||||||||||||| ||||||| ||| || || || || ||||||||||||||||| |||
Sbjct 773 GCAACAAGGTTGGGAAATGTGTACACAATCGGTAAGGGAACAAAGCCATGGGTGTCCCTT 832
Query 757 CCCAAGGGTAAAGGTATTAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTGGT 816
|| |||||||||||||||||| |||| ||||| ||||| ||||||||||| ||| ||| |
Sbjct 833 CCAAAGGGTAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCTGCT 892
Query 817 CAACAGGCT 825
||||| |||
Sbjct 893 CAACAAGCT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5