BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495966
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58470.1 | Symbols: TAF15b | TBP-associated factor 15B | chr... 2126 0.0
> AT5G58470.1 | Symbols: TAF15b | TBP-associated factor 15B | chr5:23637707-23640920
REVERSE LENGTH=2042
Length=2042
Score = 2126 bits (1151), Expect = 0.0
Identities = 1373/1474 (93%), Gaps = 40/1474 (3%)
Strand=Plus/Plus
Query 1 AAAAAGGGTCTCACACAATTCGTTAAGAAGTTTTGGGTCTG-T-TTTATCGCAAACCCTA 58
||||||| |||||||| |||||||||| |||||| |||||| | ||||||||||||||||
Sbjct 5 AAAAAGGCTCTCACACGATTCGTTAAG-AGTTTT-GGTCTGTTGTTTATCGCAAACCCTA 62
Query 59 GGTCATGGCTGGGATGTACAATCAAGATGGCGGCGGAGGTGCGCCTATCCCGTCGTACGG 118
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 63 GGTCATGGCTGGGATGTACAATCAAGACGGCGGCGGAGGTGCGCCTATTCCGTCGTACGG 122
Query 119 TGGTGATGGATACGGCGGAGGTGGAGGTTATGGAGGTGGTGATACTGGATATGGAGGACG 178
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 123 TGGTGATGGATACGGCGGAGGGGGAGGTTATGGAGGTGGTGATGCTGGATATGGTGGACG 182
Query 179 TGGTGCCTCTGGCGGAGG-AGGTTACGGCGGACgcggtggttatggcggtggcggtggta 237
||||||||||||||||| | |||||||||||||||||||||| |||||| || |
Sbjct 183 CGGTGCCTCTGGCGGAGGTA-GTTACGGCGGACGCGGTGGTTA---CGGTGGAGG-CG-- 235
Query 238 gtggtagaggaaatcgaggtggtggcggtggtggATATCAAGGAGGTGATCGCGGTGGAA 297
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 236 GTGGTAGAGGAAATCGAGGCGGTGGAGGTGGTGGATATCAAGGAGGTGATCGCGGTGGAA 295
Query 298 GAGGAAGTGGTGGCGGCGGCAGAGATGGAGATTGGCGTTGTCCCAACCCTAGTTGTGGGA 357
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 296 GAGGAAGTGGCGGCGGAGGCAGAGATGGAGATTGGCGTTGTCCCAACCCCAGTTGTGGGA 355
Query 358 ACGTGAACTTTGCAAGGAGAGTTGAATGTAACAAGTGTGGTGCACCTGCTCCTTCTGGTA 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 ACGTGAACTTTGCAAGGAGAGTTGAATGTAACAAGTGTGGTGCACTTGCTCCTTCTGGTA 415
Query 418 CTGGTTCTGGTTCTGGTGCTGGTGATCGTGGCGGTGGTGGATATAGCCGAGGTGGAGGTG 477
|| ||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 416 ------CTAGTTCTGGTGCTAATGATCGTGGAGGTGGTGGATATAGCCGAGGTGGAGGTG 469
Query 478 CCAGTGATCGTGGGGGTGGTCGTGGAGGTAGAAACGATAGTGGTAGGAGCTATGAGAGTA 537
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 470 ACAGTGATCGTGGGGGTGGTCGTGGTGGTAGAAACGATAGTGGTAGGAGCTATGAGAGTA 529
Query 538 GTAGATATGATGGTGGAAGTAGGAGTGGTGGTAGCTATGGTAGTGGTAGTCAACAGAGGG 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 530 GTAGATATGATGGTGGAAGTAGGAGTGGTGGTAGCTATGGTAGTGGTAGTCA---GAGGG 586
Query 598 AAAATGGTTCGTATGGTCAGGCTCCTCCTCCTGC---AGCTATTCCATCCTACGATGGTT 654
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 587 AAAATGGTTCGTATGGTCAGGCTCCTCCTCCTGCTGCAGCTATTCCATCCTACGATGGTT 646
Query 655 CTGGAAGTTATCCTCCACCCTCTGGTTATGGAATGGAAGCTGTGCCCCCGCCTCCAAGCT 714
|||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||
Sbjct 647 CTGGAAGTTATCCTCCACCCACGGGTTATGGAATGGAAGCTGTTCCCCCGCCTACAAGCT 706
Query 715 ATTCTGGTGGCCCCCCGTCATATGGTGCTCCAAGAGGAGGTTATGGCGGTGATGCACCAA 774
||||||||||||| ||||||||||||| |||| |||| ||||||||| |||||||||| |
Sbjct 707 ATTCTGGTGGCCCGCCGTCATATGGTGGTCCACGAGGGGGTTATGGCAGTGATGCACCGA 766
Query 775 GCACTGGTGGTCGGGGTAGTAGGGGTGGCGGCTATGATGGGGGTAGTGCTCCTCGACGGC 834
||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 767 GCACTGGTGGTCGTGGTGGTAGGAGTGGCGGCTATGATGGTGGTAGTGCTCCTCGACGGC 826
Query 835 AGGAAGCTAGTTATGAAGATGCAGGC-ACTGAA---GTCAAGCAGTGCGATGCGGATTGT 890
|||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||
Sbjct 827 AGGAAGCTAGTTATGAAGATGCAG-CTACTGAAAAAGTCAAGCAGTGCGATGCTGATTGT 885
Query 891 GATGATACTTGTGATAATGCTAGAATATACATCTCTAATTTACCTCTGGATGTGACTACT 950
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 886 GATGATAATTGTGATAATGCTAGAATATACATCTCTAATTTACCTCCGGATGTGACAACT 945
Query 951 GATGAACTCAAGGATCTCTTTGGTGGCATTGGCCAAGTTGGAAGAATTAAGCAAAAGCGG 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 946 GATGAACTCAAGGATCTCTTTGGTGGCATTGGCCAAGTTGGAAGAATTAAGCAGAAGCGT 1005
Query 1011 GGTTACAAAGATCAGTGGCCCTATAATATTAAGATTTACACTGATGAGAAGGGTAACAAT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1006 GGTTACAAAGATCAGTGGCCCTATAATATTAAGATTTACACTGATGAGAAGGGTAACTAT 1065
Query 1071 AAAGGTGACGCCTGTCTGGCCTATGAAGATCCTAGCGCTGCACACTCTGCAGGCGGCTTT 1130
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1066 AAAGGTGACGCCTGTCTGGCTTATGAAGATCCCAGCGCTGCACACTCTGCAGGCGGCTTT 1125
Query 1131 TTCAACAATTACGAAATGAGGGGGAACAAAATTAGTGTAACGATGGCAGCGAAGTCTGCG 1190
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1126 TTCAACAATTACGAAATGAGGGGGAACAAGATTAGTGTAACGATGGCAGAAAAGTCTGCG 1185
Query 1191 CCCCGTGCTCCTACCTTTGAGCAGAGAGGCGGTGGTAgaggaggaggaggaggaggaggG 1250
|||||||||||||||||||| |||||||| ||| | || || ||||||||||||
Sbjct 1186 CCCCGTGCTCCTACCTTTGACCAGAGAGG---TGG--G-GGT--AG-AGGAGGAGGAGGT 1236
Query 1251 GGTGGCTATGGTGGTGGTGGGGGAGACAGAAGAAGAGATAACTACGGTTCAGGGCCAGAC 1310
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1237 GGTGGCTATGGTGGTGGTGGGGGAGACAGAAGAAGAGACAACTACAGTTCAGGGCCAGAC 1296
Query 1311 AGAAACCATCATGGGGGAAACCGGTCTCGTCCATATTGAGAGAAAGAGAGGAATCAGTGA 1370
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1297 AGAAACCACCATGGGGGAAACCGGTCTCGTCCATATTGAGAGAAAGAGAGGAATGAATGA 1356
Query 1371 ATCAGCTATTATGTGTTCTAAGAGTTTTGTGTGT-TGAGGG-GGGAATTTTAGTAAAATG 1428
||||||| |||||||||||||||||||||||||| | | || ||||||||||||||||||
Sbjct 1357 ATCAGCTGTTATGTGTTCTAAGAGTTTTGTGTGTGTTAAGGAGGGAATTTTAGTAAAATG 1416
Query 1429 TTCTATGAGTCATCATATTGGAGATACaaaaaaa 1462
|||||||| || ||||||||||||||||||||||
Sbjct 1417 TTCTATGAATCCTCATATTGGAGATACAAAAAAA 1450
Score = 444 bits (240), Expect = 2e-123
Identities = 339/383 (89%), Gaps = 22/383 (6%)
Strand=Plus/Plus
Query 1626 AGGAAGCTGATATTTAACTGCAAAATGCATTGCAAATTGGTGCTATGATGATTTCAGGTG 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 AGGAAGCTGATATTTAACTGCAAAATGCATTGCAAATTGGTGCTATGATGATTTCAGGTG 1511
Query 1686 AGTGCATTTATCTTGATTACTTCTTTCTACTGAACCAGAAGTCCCTTTATTGCTTCTCTT 1745
|||||||| |||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 1512 AGTGCATTCATCTTGATTACTTCTTTCAAC--A-CCAGAAGTCCCTTTTTTGCTTCTCTT 1568
Query 1746 C-TTCTTATTTTTTGACTCTGTTCAAGACAAACAAATCCAGTCATATGTTTCCATGTTGT 1804
| ||||| ||||| |||||||||||| ||||||||| | |||| ||||||| ||||||||
Sbjct 1569 CCTTCTT-TTTTT-GACTCTGTTCAACACAAACAAAAC-AGTCGTATGTTTTCATGTTGT 1625
Query 1805 ATTGTGTA-TGCATTCATTTAGGCAAACTCACTTCCCTTCACAATTATCGGAGTTAGT-A 1862
|||||||| ||||||||||||||||| | |||||| ||| |||||| |||||||| || |
Sbjct 1626 ATTGTGTAATGCATTCATTTAGGCAACCACACTTCTCTTTACAATTTTCGGAGTT-GTTA 1684
Query 1863 TCttttttttttttttttCTCTCAAACTTCCTTTTATAGCAACATATGTTCCACAAGAAA 1922
|| |||||| ||| |||||||| |||||||||||||| |||||| | ||||
Sbjct 1685 TCGTTTTTT---------CTCGCAAACTTC-TTTTATAGCAACATGTGTTCCTCGAGAAT 1734
Query 1923 TGGCTGGAGTGGCGGATGGCTAGGCACTCGT--CTGATCAGTTGATCTGAAGTATGCAGT 1980
|||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1735 TGGCAGGAGTGGGGGATGGCTAGGCACTTGTGTCTGATCAGTTGATCTGAAGTATGCAGT 1794
Query 1981 GACATTTCAAAGATCAACTTGAT 2003
||| |||||||||||||||||||
Sbjct 1795 GACCTTTCAAAGATCAACTTGAT 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102860916705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5