BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495970
Length=3153
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 5206 0.0
> AT5G58510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G55060.2);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:23648153-23654552 REVERSE LENGTH=3157
Length=3157
Score = 5206 bits (2819), Expect = 0.0
Identities = 3050/3162 (96%), Gaps = 14/3162 (0%)
Strand=Plus/Plus
Query 1 AACTTTACCATCATCGTCGTTGTTCTTTACCCGAAGCGGATCTCTTCGTCTGTGTGATCG 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AACTTTACCATCATCGTCGTTGTTCTTT-CCCGAAGCGGATCTCTTCGTCTGTGTGATCG 59
Query 61 GAGGATCTGCAAGAGTTCCTTTA-CCA-AGAACagagagagagagaccgagagaTATACG 118
||||||||||||||||||| ||| ||| | || | |||||||||| ||||||||| ||
Sbjct 60 GAGGATCTGCAAGAGTTCC-TTACCCATACAA-ACTCAGAGAGAGACTGAGAGATATTCG 117
Query 119 CTACCCAATTTA-TATGGCTTCTATAAGCAAATCGAATCCTCTCGAAGAAGCTGATGATG 177
||| ||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 118 TTACGCAATTTATTATGGCTTCTGTAAGCAAATCGAATCATCTCGAAGAAGATGATGATG 177
Query 178 CTGAAGAAGAGGTGCAACATTTCGATGATTTCACTCTAGCTTCTTCCTGGGAAAGGTTCA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTGAAGAAGAGGTGCAACATTTCGATGATTTCACTCTAGCTTCTTCCTGGGAAAGGTTCA 237
Query 238 TCTCAGACATTGAAGCAACTTGTCGTCAATGGTTAGCCGATGGTCCCAAAAACCTGGTGG 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 TCTCAGACATTGAAGCAACTTGTCGTCAATGGTTAGCTGATGGTCCCAAAAACCTGGTGG 297
Query 298 AAAAGGGCGCTGTTGCAGTGGAGGATTCAAAGAATCTGTTTACGGTCAAACACGAACTTA 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAAAGGGTGCTGTTGCAGTGGAGGATTCAAAGAATCTGTTTACGGTCAAACACGAACTTA 357
Query 358 AAAATGTTGCAAAGAGCTATTGCATGGAGTTCTACTTTCAAATTGATAATAATGGTAGCC 417
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAATGTTGCAAAGAGCTATTGTATGGAGTTCTACTTTCAAATTGATAATAATGGTAGCC 417
Query 418 AACAAGCTGGAATTGGTAATTGGAACAGTAATTCACATGATCTCCAGCTTTGCTTTGGGG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AACAAGCTGGAATTGGTAATTGGAACAGTAATTCACATGATCTCCAGCTTTGCTTTGGGG 477
Query 478 TGAAGGATTTTCTGTTGATTGCTCCACAAAGTGCCAGTGGGGTGCTTCTTGATACACCAG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGAAGGATTTTCTGTTGATTGCTCCACAAAGTGCCAGTGGGGTGCTTCTTGATACACCAG 537
Query 538 AGTCTAGCAAGCTTCTGAGTGCGGTTGCTATTGCTTTGTCTAACTGTGGCAGCTTGTGGC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGTCTAGCAAGCTTCTGAGTGCGGTTGCTATTGCTTTGTCTAACTGTGGCAGCTTGTGGC 597
Query 598 CAGCCTTTGTCCCTGTGCATGACCCTTCACGCAAAGCATATATTGGAATCCAGAATATGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGCCTTTGTCCCTGTGCATGACCCTTCACGCAAAGCATATATTGGAATCCAGAATATGG 657
Query 658 GCACTGTTTTTACGAGAAGATTTGAAGCAGATCGTATTGGCAGCCAAGTCCCCGTGAAAC 717
||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 658 GCACTGTTTTTACTAGAAGATTTGAAGCAGATCGTGTTGGCAGCCAAGTTCCCGTGAAAC 717
Query 718 TCATGCACCTGGAAGGGCTATATGAATTGTTTGTTTCTAAGTTTGTTTATTCAGGAGTGG 777
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 TCATGCACCTGGAAGGGCTATATGAGTTGTTTGTTTCTAAGTTTGTTTATTCAGGAGTGG 777
Query 778 ACTTCTCGATGCATAATTTCAAAGTCCATTTTATGATGAGGCTAACATACCAAACCTTCC 837
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACTTCTCGATGCATACTTTCAGAGTCCATTTTATGATGAGGCTAACATACCAAACCTTCC 837
Query 838 CATATGACGAGGAAGATGAGGAAATTGATATGGATGAGCTTATGGATGACAAAGCAGACA 897
||||||||||||| |||||||||||||||| ||||||| |||||| ||||||| ||||||
Sbjct 838 CATATGACGAGGAGGATGAGGAAATTGATACGGATGAGGTTATGGGTGACAAATCAGACA 897
Query 898 CTGCAGAAAACTATGGTTCTGAGTCACGCAACAAGGTGCTCTGGGATGATGACTGTCCTT 957
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 898 CTGCAGAACACTATGGTTCTGAGTCACGCAATAAGGTGCTCTGGGATGATGACTGTCCTT 957
Query 958 GGAGTGAGTGGTACTCTGCTGAAGATCCACTTAGAGGATTCGAATTGGTGGTCACATGGG 1017
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 958 GGAGTGAGTGGTACTCTGCTGAAGATCCACTAAGAGGATTCGAATTGGTGGTCACATGGG 1017
Query 1018 CTGACAGGACTGTAGAAAGCACACTTGAGATGGCTGAACTTGAAAATGCTTCACCCCATG 1077
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1018 CTGACAGGACTGTAGAAAGCACACTTGAGATGGCTGAACTTGAAAATGCCTCACCCCATG 1077
Query 1078 ATGCTGAGAAGTGGATTTTACACCCAATCCTCTCACCGTATCTGGGTGATCCTTCACATG 1137
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1078 ATGCTGAGAAGTGGATTTTACACCCAATCCTCTCGCCATATCTGGGTGATCCTTCACATG 1137
Query 1138 GGAAAAGAATTGATTTTGCTTCCCAACTACTTTGCTTGGTTGAAGCATTGGATACGTCCT 1197
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1138 GCAAAAGAATTGATTTTGCTTCCCAACTACTTTGCTTGGTTGAAGCATTGGATTCGTCTT 1197
Query 1198 TCGCAGCTCAGTTTATGGAGGATTTCGTGTCAGTGGAAAATCCAAGCTCTGAAAATTTAA 1257
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1198 TCTCAGCTCAGTTTATGGAGGATTTTGTGTCAGTGGAAAATCCAAGCTCCGAAAATTTAA 1257
Query 1258 AGACCTCTGTGGTCATACCTCCTCCGTCAGTTCTTGATCGGGTGATTAAAGATCTCTTTC 1317
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGACCTCAGTGGTCATCCCTCCTCCGTCAGTTCTTGATCGGGTGATTAAAGATCTCTTTC 1317
Query 1318 GTGAGGGATCTAAACTCCCAGATTTTACTAAAGGCGAACACAGGCTTTCTCGAGCTCTCA 1377
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1318 GTGAGGGGTCTAAACTCCCAGATTTTACAAAAGGCGAACACAGGCTTTCTCGAGCTCTTA 1377
Query 1378 AGGCTGCACCTCTTGAATCTCTTTTTACACAATTCTGTTTGCACTCACTGTGGTTTGGCA 1437
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGGCTGCACCGCTTGAATCTCTTTTTACACAATTCTGTTTGCACTCACTGTGGTTTGGCA 1437
Query 1438 ACTGCAATATCCGTGCCATTGCCTTCCTCTGGATAGAGTTTGTCCGTGAAGTTCGATGGT 1497
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1438 ATTGCAATATCCGTGCCATTGCCTTTCTCTGGATAGAGTTTGTCCGTGAAGTTCGATGGT 1497
Query 1498 GTTGGGAAGAGACACAGCCGTTGCCGAAAATGCCAATTGACGGTCCTATTGATTTGTCCA 1557
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1498 GTTGGGAAGAGACACAGCCGTTGCCGAAAATGCCAATTGACGGTTCTATTGATTTGTCCA 1557
Query 1558 CTTGTTTGATCAACCAGAAGTTGCACTTGCTTGCAATTTGCATCGaaaaaaaaCGTGAAA 1617
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1558 GTTGTTTGATCAACCAAAAGTTACACTTGCTTGCAATTTGCATCGAAAAAAAACGTGAAA 1617
Query 1618 TGAATGAAGAGTTCCTAGACTGTATAGGAAGTGATGACAGTTCAGACGCTTCTGTTTCTA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TGAATGAAGAGTTCCTAGACTGTATAGGAAGTGATGACAGTTCAGACGCTTCTGTTTCTA 1677
Query 1678 TGGAGGATCACCGCAAAGTCGACAAGAGAAGAAATACATCCTCAGAAGCAGATCTGCAGA 1737
||||||| |||| ||| |||||||||||||||||||||||||| |||| ||| |||| ||
Sbjct 1678 TGGAGGAACACCACAAGGTCGACAAGAGAAGAAATACATCCTCGGAAGAAGAACTGCGGA 1737
Query 1738 GGAAACGTGACAGCTCAATTGCAGAAGATACATCTAATCAACTTAGATTTGAGAGGAAAA 1797
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 1738 GGAAACGTGACAGCTCAATTGCAGAAGATACATCTAAGCAACTCAGATTTGAGCGGAAAA 1797
Query 1798 CTGAACGCACAAATTCTGTGAACCAAAGCCCAACAGATGCCATCAGGAGAGGTTCAGCCG 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1798 CTGAACGCACAAATTCTGTGAACCAAAGCCCAACAGATGCCATCAGGAGAGGTTCAGCTG 1857
Query 1858 GACCAGTGGGGACCATGATGCTCCTGAAGTCACGTCAGCAACTCCATGCCCCATTTACCC 1917
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GACCAGTGGGGACGATGATGCTCCTGAAGTCACGTCAGCAACTCCATGCCCCATTTACCC 1917
Query 1918 AGGATCCACCTCTTATGACTGAAGACATGCATGAAGAAAGACTCCAGGCTGTTGAGGCGT 1977
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AGGACCCACCTCTTATGACTGAAGACATGCATGAAGAAAGACTCCAGGCTGTTGAGGCGT 1977
Query 1978 TTGGTGATTCCCTTAACGTTCCTGGCCAGTTGGAGAAAGACATCTTATTATCTGACATGT 2037
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1978 TTGGTGATTCCCTTAACGTTCCTGGCCAATTGGAGAAAGACATCTTATTATCTGACATGT 2037
Query 2038 CAGCATTCAAAGCGGCAAACCCAGATGCAGTGTTTGAGGACTTTATCAGATGGCATTCAC 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 CAGCATTCAAAGCGGCAAACCCAGATGCAGTGTTTGAGGACTTTATCAGATGGCATTCAC 2097
Query 2098 CTGGAGATTGGGAGAGCTGTGAACCTAAAACCACTGAACCATCAGCAGGCCCCAGCACCA 2157
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CTGGAGATTGGGAGAGCTTTGAACCTAAAACCACTGAACCATCAGCAGGCCCCAGCACCG 2157
Query 2158 AAGGCTCGAAAGATGAATGGCCTCCTCGTGGCCGCCTTTCTCAACGGATGTCTGATCAAG 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 AAGGCTCGAAAGATGAATGGCCTCCTCGTGGCCGCCTTTCTCAACGGATGTCTGATCAAG 2217
Query 2218 GAAACTTGTGGAGAAAAAGTTGGAATGATGCACCCGCTTTGCCAGCCGATGATCAAAAGC 2277
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2218 GAAACTTGTGGAGAAAAAGTTGGAATGATGCACCCGCTTTGCCAGCCGATGACCAAAAGC 2277
Query 2278 CTCTCCTAGACCCAAACCGAGAGGGAGAGAAGATTGTTCATTACCTGGAAACAGTGCGGC 2337
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2278 CTCTCCTAGACCCGAACCGAGAGGGAGAGAAGATTGTTCATTACCTGGAAACAGTACGGC 2337
Query 2338 CACATCAGCTTCTTGAGCAAATGGTCTGCACAGCCTTCAGAGGATCAGCCGACACTCTTA 2397
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2338 CTCATCAGCTTCTTGAGCAAATGGTCTGCACAGCCTTCAGAGGATCAGCTGACACTCTTA 2397
Query 2398 ACCAGACAAATTTCGGGAACATGAGACAAATGACCTCTAAATTGGAGCAACTCTACCTCA 2457
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 ACCAGACAAACGTCGGTAACATGAGACAAATGACCTCTAAATTGGAGCAACTCTACCTCA 2457
Query 2458 TCATCAAATCTACTTTGGGGGCTCTACAACGCAACAATCTTCCGGATAAAGCAAAGACCG 2517
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2458 TCATGAAATTTACTTTGGGGGCTCTACAACGAAACAATCTTCCGGATAAAGCAAAGACCG 2517
Query 2518 TCAAAGACCTGAAACGTCTCTGCATGGTCTTTGAAAGCGTGGAGAAGTTGGTAGCGGTTG 2577
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2518 TCAAAGACCTGAAACGTCTCTGCATGGTCTTTGAAAACGTGGAGAAGTTGGTAGCGGTTG 2577
Query 2578 CGGCATCTATTCACAGAAAGTTCCTGGACGCATCACGCCTTGCTCAAGTAATATTCAGCG 2637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2578 CGGCATCTATTCACAGAAAGTTCCTGGACGCATCACGCCTTGCTCAAGTAATATTCAGCG 2637
Query 2638 ACTTCTACGGCATTTATGCTCCAACAATGGGAATGAGCTCAAATGATGAAGAGAACAAAA 2697
||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2638 ACTTCTATGGCGTTTATGCTCCAACAATGGGAATGAGCGCAAATGATGAAGAGAACAAAA 2697
Query 2698 GCAGAACGGAGATGGAAGTAAGTAGACAGGAAGTGAGTTTGAGAGAGAGACAAGTGGTGT 2757
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2698 GCAGGACGGAGATGGAAGTAAGTAGACAGGAAGTGAGTTTAAGAGAAAGACAAGTGGTGT 2757
Query 2758 CGAATCTGTTCTCGCCTCCATCGGCGAACCAGTCATGGAGAAAAGTACTGAGTATGGGAA 2817
||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||
Sbjct 2758 CGAATCTGTTCTCGCCTCCATCGGCTAACCAGTCTTGGAGAAAAGTGCTCAGTATGGGAA 2817
Query 2818 ATCTTCTAAACGGACACGAACCCATTCTCAGGGAGATCATTTTCTCCACTGGAGATGATG 2877
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 2818 ATCTTCTAAACGGACACGAACCTATTCTCAGGGAGATCATTTTCTCCACCGGAGACGATG 2877
Query 2878 TCAACAACGGAATCCATTACGCGGCAGCTGCTGATGTGGCGGCTACAAGTGACCGGAAGG 2937
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2878 TCAACAACGGAATCCATTACGCGGCAGCTGCTGATGTGGCGGCCACAAGTGACCGGAAGG 2937
Query 2938 GAGAAGAAATCGAGACACACCGAATGTATGTGTCTGGAACATCTAACGATCTCCGGGTTG 2997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2938 GAGAAGAAATCGAGACACACCGAATGTATGTGTCTGGAACATCTAACGATCTCCGGGTTG 2997
Query 2998 GGCTCTCTGTTACTTCTTGCGATTGATTCTTTT-----CATTTTTAATTTAAC-ATTACG 3051
|||||||||||||||| ||||||||||| |||| |||||| |||||||| || |||
Sbjct 2998 GGCTCTCTGTTACTTCCTGCGATTGATTTTTTTTTTTTCATTTT-AATTTAACCAT-ACG 3055
Query 3052 ATACAACACATTTGTTCTCTAATAGAAAATTAGCAAATGAAGTTCGGCTTGAACAAGTTT 3111
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 3056 ATACAACACATTTGTTCTGTAATAGAAAATTAGCAAATGAAGTTCTGCTTGAACAAATTT 3115
Query 3112 CTAAGCGTAAATTTTTGCATTAATAGACAACGATCGATTTGC 3153
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 3116 CTAAGCGTAAATTTTTGCATTAATAGACAACGATTGATTTGC 3157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156821863818
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5