BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495972
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58520.1 | Symbols: | Protein kinase superfamily protein | ... 3206 0.0
> AT5G58520.1 | Symbols: | Protein kinase superfamily protein
| chr5:23655234-23658162 FORWARD LENGTH=2112
Length=2112
Score = 3206 bits (1736), Expect = 0.0
Identities = 1995/2120 (94%), Gaps = 18/2120 (1%)
Strand=Plus/Plus
Query 1 AAAAATCCCTGAAATCTCAAAGCAC---ACTTCCATTTTCATCTCTCTCAAGAGCTCATA 57
|||| |||||||||||| ||||||| |||||||||||||||| ||||||| ||||||
Sbjct 1 AAAACTCCCTGAAATCTGAAAGCACAAAACTTCCATTTTCATCTATCTCAAGTGCTCATT 60
Query 58 GTTCATTGTCGACGTACAATGGCTGCAGCCTTGGAATGCTGGTCGAGTCGTGCCGGAGGT 117
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 61 GTTCATTGTCGACGTACAATGGCTGCAGCCTTGGAGTGCTGGTCGAGTCGTGCCGGAGAT 120
Query 118 GGTGGCGGTCCCGACGACGATCTGCTGGATCAAGTACTCATGCGAACGCACGACAGGTCT 177
||||||| ||||||| |||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 121 GGTGGCGATCCCGACAACGATCTGGTCGATCAGGTACTCATGCGAACGCACGACAGGTCT 180
Query 178 GAGTCCTTAATTACGTCTCTGCCTGAGACGAGTTTGGAGGTTGAAGGTTCCACGGCGGGT 237
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 181 GAGTCCGTAATTACGTCTCTACCTGAGACGAGTTTGGAGGTTGAAGGTTCCACGACGGTT 240
Query 238 TTTGATCAGAGCTCATCGGCTATGCAGAAGCGGTTTCAGCGTCTCAGCCG-AATCGTGTC 296
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 TTTGATCAGAGCTCGTCGGCTATGCAGAAGCGGTTTCAGCGTCTCAGCCGCAA-CGTGTC 299
Query 297 TGAGGCGATTGCGTCGCTTAAAAACTCGCTTAATCTCGATTCCGCGCGGGATAATCAGAC 356
|||||||||| ||||||||||||| |||||||||| ||||| || |||||||||||||
Sbjct 300 AGAGGCGATTGTGTCGCTTAAAAACACGCTTAATCTGGATTCTGCTCGGGATAATCAGAG 359
Query 357 TGTCGGCGGAGCTACGACGCCTAAGGCGGAAGTCGGTGGCGGCGGCGGCGGAAGGAAGCT 416
| |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 360 TTTCGGCGGAGCTATGACGCCCAAGGCGGAAGTCAGTGGCGGCGGCGGCGGAAGGAAGCT 419
Query 417 CGTTTGGGCTACTGTAGTGAGGAACCTTGCT-AGAATGTATCCTGGTAGCCAGTTGCCGG 475
|||||||||||||||||||| |||||||||| || ||||||||||| || || || ||||
Sbjct 420 CGTTTGGGCTACTGTAGTGAAGAACCTTGCTAAG-ATGTATCCTGGGAGTCAATTACCGG 478
Query 476 AGAAGCTCGTATCAAATCTCAAGAAGCATTACGATTCCTTGCCCTTCAGTTATAGTCAGG 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 AGAAGCTCGTATCAAATCTCAAGAAGCATTACGATTCCTTGCCATTCAGTTATAGTCAGG 538
Query 536 CTGATTTCGATATGAAAGAAGTATTTCTACACGTCAAGTTGATAGAACAAGCTTCTGGAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 CTGATTTCGATATGAAAGAAGTATTTCTACACGTCAAGTTGATAGAACAAGCTGCTGGAG 598
Query 596 ATGACAATCCTGTGTTTATGATTCAAGAAGTATCTGCTGAGGAACCTCGGGGTTCAGTCC 655
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| || |
Sbjct 599 ATGACAATCCTGTGTTTATGATTCAAGAAGTGTCTACTGAGGAACCTCGAGGTTCCGTGC 658
Query 656 TCAGACTCACATTCGCCTGTAACTCTTCTCTTTCATGGTCAACTATGTCTGGCGCTCTTG 715
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||
Sbjct 659 TCAGACTCACATTCGCCTGTAACTCTTTTCTATCATGGTCAACTATGTCAGGCGTTCTTG 718
Query 716 ATAGTGCTTCGATTTGTTGCAAGAAGATACAAAT-TTTCGAGAAGAAGGGGTTGACTCTC 774
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 719 ATAGTGCTTCGATTTGTTGCAAGAAGATACAAATCTTT-GAGAAGAAGGGGTTGACTCTC 777
Query 775 GGGGTTGTGCTTCTTCTGGATCAATCTGGGCAACATAATTTCTTTAAAACCCGGGTAGAA 834
|||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 778 GGGGTTGTTCTTCTTCTGGATCAATCTGGGCAACATAGTTTGTTTAAAACCCGGGTAGAA 837
Query 835 AACGCCCTCAAGGTTGCAACCAAAAAGCCAAAACCGACTTCTGTTAAGCTCCCTTTTGGG 894
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 838 AACACCCTCAAGGTTGCAACCAAAAAGCCAAAACCGACATCTGTTAAGCTCCCTTTCGGG 897
Query 895 CTTTGTGGCTGTCAAGAACAGAACGGCGGTGTAGGGGAACTTGGAGGTGTTGAAGAAGAA 954
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 898 CTTTGTGGCTGTCAAGAACAGAACGGTGGTGTAGGGGAACTTGGAGGTGTTGAAGAAGAG 957
Query 955 TCCATTCAGCATAGTAATAGGCTAGGGATAGAAAATTTGAATAGTACGATCCAGCTTCAC 1014
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 958 TCCATTCAGCATAGTAGTAGGCTAGGGATAGAAAACTTGAATAGTACGATCCAGATTCAG 1017
Query 1015 ATTCCACTTCCGAGTTCTTCATTTGCTGTATCAGTAGATGAATGGCAAACTATCCAATCG 1074
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1018 GTTCCACTTCCGAGTTCTTCATTTGCTGTATCAGTAGATGAATGGCAGACCATCCAATCG 1077
Query 1075 GGTGGCAGTGAGATTGGAAAATGGCTATTGAATTCTGATAGTTTTGAGTTCGGTGATCAG 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGTGGCAATGAGATTGGAAAATGGCTATTGAATTCTGATAGTTTTGAGTTCGGTGATCAG 1137
Query 1135 ATTGGACCAACTTCTTTCAAAGGAATTTTCCGAGGAAAAAGAGTGGGAATTGAGAAGCTA 1194
||||||||||||||| |||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 1138 ATTGGACCAACTTCTCTCAAAGGAATTTTCCGCGGTAAAAGAGTGGGAATCGAGAAACTA 1197
Query 1195 AAAGGTTGTGATAAGGGGAATTCATATGAGTTTGAGCTCCGAAAAGATTACTTGGAGCTG 1254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAAGGTTGTGATAAGGGGAATTCCTATGAGTTTGAGCTCCGAAAAGATTACTTGGAGCTG 1257
Query 1255 ATGGCTTGTGGACACAAGAGCATTCTGCAATTTTATGGCGTTTGCATCGATGAGAACCAT 1314
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1258 ATGGCTTGTGGACACAAGAGCATTCTGCAATTTTACGGTGTTTGCATCGATGAGAACCAT 1317
Query 1315 GGATTATGCGTTGTGACAAAACTGATGGAAGGCGGGTCACTCCATGAACTGATGTTGAAG 1374
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 GGATTATGCGTTGTGACAAAACTGATGGAAGGTGGGTCACTCCATGAACTGATGTTGAAG 1377
Query 1375 AGTAAGAAGCTTCAAACCAAGCAGATACTGCGAATTGCTATAGACATAGCCGAAGGGCTG 1434
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1378 AATAAGAAGCTTCAAACCAAGCAGATACTGCGAATTGCAATAGACATAGCCGAAGGGCTG 1437
Query 1435 AAGTTCGTGAATGATCATGGTGTTGCTTATCGGGACCTTAACACACAAAGAATACTACTA 1494
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1438 AAGTTCGTGAATGACCATGGTGTTGCTTATCGGGACCTTAACACACAAAGAATATTACTA 1497
Query 1495 GATAAGCATGGCAATGCATGTTTGGGGGATATTGGAATAGTCACCGCTTGTAAGAGCTTT 1554
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1498 GATAAGCATGGCAATGCATGTTTGGGAAATATTGGGATAGTCACCGCTTGTAAGAGCTTT 1557
Query 1555 GGTGAAGCTGTGGAGTACGAAACTGATGGCTATCGATGGCTTGCACCTGAGATCATAGCT 1614
||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1558 GGTGAGGCCGTGGAATATGAAACTGATGGTTATCGATGGCTTGCACCTGAGATCATAGCT 1617
Query 1615 GGTGACCCGGAAAATACGACAGAGACTTGGATGAGCAATGCTTATAGTTTTGGGATGGTA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GGTGACCCGGAAAATACGACAGAGACTTGGATGAGCAATGCTTATAGTTTTGGGATGGTA 1677
Query 1675 CTGTGGGAGATGGTGACAGGAGAGGCAGCTTATGCATCTTGCTCGCCCGTGCAGGCAGCG 1734
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1678 CTGTGGGAGATGGTGACGGGAGAGGCGGCTTATGCATCTTGCTCGCCCGTGCAGGCGGCA 1737
Query 1735 GTTGGGATTGCGGCTTGTGGCCTAAGACCGGATATCCCAAAGGAATGCCCTCAAGCCCTG 1794
|||||||| |||||||||||||| |||||||| || ||||| ||||||||||||| ||||
Sbjct 1738 GTTGGGATAGCGGCTTGTGGCCTGAGACCGGAAATTCCAAAAGAATGCCCTCAAGTCCTG 1797
Query 1795 AGAACTCTGATGATCAATTGCTGGAACAACTCCCCCTCCAAACGCCCCAACTTCTCTCAT 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AGAACTCTGATGATCAATTGCTGGAACAACTCCCCCTCCAAACGCCCCAACTTCTCTCAT 1857
Query 1855 ATCCATAACACATTGCTCCGCGCCGTTTCACGCTAAGTTTGGCGTT-TATATGGTACGAT 1913
||||||||||| || || |||||||||||||| |||||||||| || ||| || || |||
Sbjct 1858 ATCCATAACACGTTACTTCGCGCCGTTTCACGGTAAGTTTGGC-TTGTATTTGATAAGAT 1916
Query 1914 CATATTGTACATTCAGATTGTAACACTAAAATCGTAATTATATTATAGTATGTAATGATC 1973
||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||
Sbjct 1917 CATATTGTACATTCAGATTGTAACACTTAAATCGTAATTATAT-A--GTATGTACTGATC 1973
Query 1974 ATAATGGTGATATTATGAACTGTTGGAAACATAAAGGGGAAGGGTGCGTGTAGGTTTGGT 2033
||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1974 ATAATAGTGATAT---GAACTGTTGGAAACATAAAGGGGAATGGTGCGTGTAGGTTTGAT 2030
Query 2034 TTGATACTTGTTGTTGTGGCCCTTGAGGACCCATTTCTTTTGTCTGTTTTAGGCCGAAAT 2093
| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2031 TCAATACTTGTTGTTGTGGCC-TTGAGGACCCATCTCTTTTGTCTGTTTTAGGCCGAAAT 2089
Query 2094 ATAGAGCAAAATATTATCTC 2113
|||||||||| |||||||||
Sbjct 2090 ATAGAGCAAACTATTATCTC 2109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104768537415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5