BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495973
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58530.1 | Symbols: | Glutaredoxin family protein | chr5:23... 1373 0.0
> AT5G58530.1 | Symbols: | Glutaredoxin family protein | chr5:23660386-23661349
FORWARD LENGTH=964
Length=964
Score = 1373 bits (743), Expect = 0.0
Identities = 898/968 (93%), Gaps = 30/968 (3%)
Strand=Plus/Plus
Query 1 AATTTTAGTCTCCCCAAATCTTCACCGTTTCTACCACCGTCAATGTGGCGGCCGTGGCGT 60
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTTTAGTCTCTCAAAATCTCCACCGTTTCTACCACCGTCAATGTGGCGGCCGTGGCGT 60
Query 61 AAATCGTCGGTCAAAATTCACGACACATACTCTCCAACCACCGCTTCCTTCAAAGACATC 120
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCGTCGGTTAAGATTCACGACACATACTCTCCAACCACCGCTTCCTTCAAAGACATT 120
Query 121 CACCATCTCTGCTCCGACGATC-CACCTTCCTACCCTTCTTCTCCTTCTCCATCTCCAAA 179
|||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||
Sbjct 121 CACCATCTCTGCTCCGACGA-CTCACCTTCCTTCCCTTCTTCTCCCTCTCCATCTCCAAA 179
Query 180 AAACGCTTCTAGAGTTTTCCACCGAGTCCGCGCAGCTAATTTGATCCTCAAATCGTGGCC 239
|| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 AACCGCTTCTAGAGTCTTCCACCGAGTCCGTGCAGCTAATTTGATCCTCAAATCGTGGCC 239
Query 240 TACTCGTCAATCTAATCAGCTCCTCCGCGCAGATTCCGAACCAATCAATCTACGCCGGAA 299
||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 240 AACTCGTCAATCTAATCACCTCCTCCGCGCAGATTCCGAACCTATCAATCTAAGCCGGAA 299
Query 300 TCTAAA-CCTAGAATCAGATTCAAAACAATCGAAGACCAAAACCGAGCCAGATGTACGGA 358
|| ||| || |||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 300 TCAAAATCC-AGAATCAGATTCGAAACAATCGAAAACCAAAACCGAACCAGATGTACGGA 358
Query 359 TTTCAATCCCAGGCGCAGAGAACAGCATCGTCGTCTACTTCACAAGCCTCCGTGTGGTTC 418
|||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||
Sbjct 359 TTTCAATCCCAGGCGCAGAGAAAAGCATTGTCGTATACTTCACAAGCCTACGCGTGGTTC 418
Query 419 GTCCAACATTCGAAGCCTGCAAATCCGTTACATCGATCCTCCATAGCTTCCCGGTACGAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTCCAACATTCGAAGCCTGCAAATCCGTTACATCGATCCTCCATAGCTTCCCGGTACGAA 478
Query 479 TCGACGAACGAGATCTCTCAATGGACGCGTCATTCTCCACCGAGCTACAACGAATCTTCG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCGACGAACGAGATCTCTCAATGGACGCGTCATTCTCCACCGAGCTACAACGAATCTTCG 538
Query 539 GGAAGGAT--GAA--A-A-CCAGAACCAGACGAAGACGCCGAAGCTGCCGCGAGTGTTCA 592
|||||||| ||| | | |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 539 GGAAGGATCAGAACCAGAACCAGAACCAGGCGAAGACGCCGAAGCTGCCGCGAGTCTTCA 598
Query 593 TCGGTGGTCGTTACATAGGAGGAGCGGAGGAGGTGAAACAGCTTCACGAGATCGGAGAGT 652
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 TCGGTGGTCGGTACATAGGAGGAGCGGAGGAGGTGAAACAGCTACACGAGATCGGAGAGT 658
Query 653 TGAAGAAGCTTGTACAAGAGTTGCCGAAGATTGAACCAGGGGTATGTGAGATGTGTGGTG 712
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAAGAAACTTGTGCAAGAGTTGCCGAAGATTGAACCAGGGGTATGTGAGATGTGTGGTG 718
Query 713 GTCATAGATTCGTACCGTGTAAGGATTGTCACGGTAGCCATAAGGTTCATACGGAGAAGC 772
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 719 GTCATAGATTCGTGCCGTGTAAGGATTGTCATGGTAGCCATAAGGTGCATACGGAGAAGC 778
Query 773 TAGGGTTCAGAACTTGCTTAACCTGCAACGAGAATGGTCTCGTCAGGTGTTCTTCTTGTT 832
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 TAGGGTTCAGAACTTGCTTAACCTGTAACGAGAATGGTCTCGTCAGGTGTTCTTCTTGTT 838
Query 833 CATTTCCTCA-TCTCCAGCCTAAT-TAATTCCTAGATTTTCAGttttttttttt-A-T-- 886
||||||| || ||||| || | ||||||||||||||||||||||||||||| | |
Sbjct 839 CATTTCCACAATCTCCT-CC-ACCCTAATTCCTAGATTTTCAGTTTTTTTTTTTCAATTT 896
Query 887 -A-----CGA------GAAATTGGAATAATTAAATATTTGTTTTTAATCTAATTTTTCAG 934
| ||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 897 CAATTTTCGAATACCAGAAATTGGAATAATTAAATATTGGTTTTTAATCTAATTTTTAAG 956
Query 935 AAGTTTCC 942
||||||||
Sbjct 957 AAGTTTCC 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5