BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495975 Length=1808 Score E Sequences producing significant alignments: (Bits) Value AT5G58540.1 | Symbols: | Protein kinase superfamily protein | ... 2525 0.0 > AT5G58540.1 | Symbols: | Protein kinase superfamily protein | chr5:23663180-23665316 FORWARD LENGTH=1809 Length=1809 Score = 2525 bits (1367), Expect = 0.0 Identities = 1675/1822 (92%), Gaps = 28/1822 (2%) Strand=Plus/Plus Query 1 ATAATAAACTTCAAACTGTTGTTGCTTTTCTAAAAGAAAAATCTTAAAGAGAGTAATGAA 60 ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 1 ATAATAAACTTCAAACTGTTGTTTCTTTTAGAAAAGAAAAATCTT-AAGAGAGTAATGAA 59 Query 61 AATTGGTCGTTGGGTTTATGATAATTAAA-AAAGGTTGAAAGAGTATTAGCAACCGTTGA 119 |||||||||||||||||| |||||||||| |||||||||||||| | | |||||||||| Sbjct 60 AATTGGTCGTTGGGTTTACGATAATTAAACAAAGGTTGAAAGAGCA-T--CAACCGTTGA 116 Query 120 TTAGTCTTCTTGATCCTCAACGACGACTTCAACTGCTCCTCCAACATACTCTTCCTTCTT 179 ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 117 TTAGTCTTCTTAATCCTCAACGACGAATTCAACTGCTCCTCCAATATTCTCTTCCTTCTT 176 Query 180 CCTTCTTTCGGTAACAAACAACAGAAGCAAACAAATCAATATCCTATGAGTTCCAATAGA 239 ||||||||||| ||| ||| ||||||||||| |||||||| ||||||||||||||| ||| Sbjct 177 CCTTCTTTCGGAAAC-AACCACAGAAGCAAAGAAATCAATCTCCTATGAGTTCCAAGAGA 235 Query 240 CGGCGGAGATTCAATCTCCGAACAGTATTCTCCATCATCTTCCTCACCTTTCTTCCTCTG 299 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 236 CGGCGGAGATTCAATCTCCGAACAGTGTTCTCCATCATCTTCCTCACCTTTCTTCCTCTG 295 Query 300 ACTCTTAACTCTCAAGAGATTGTAGAAGTCTTTGGTTCTTCTCAAGATCACTTATCGATC 359 | |||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||| Sbjct 296 AATCTTAACTCTCAAGAGATTGTAGAGGTCTTTGATTCTTCTCAAGATCACTTCTTGATC 355 Query 360 C-AGCCCAGAGTTTATGGGAACCGTCGCAG-CTTGATTGATACACCTCTTCCTGGCAAAT 417 | | ||| ||||||||| ||||| |||||| ||| || ||||||||||||||||||||| Sbjct 356 CAATCCC-GAGTTTATGCGAACCATCGCAGCCTT-ATCGATACACCTCTTCCTGGCAAAG 413 Query 418 CCCCTGCCCTGGATGCCTCCCCGCCATCTCCGGAATCTGCAATCTTCAGAGATCCCCTGC 477 ||||||||| |||||||| ||||||||||| ||||| || ||| ||| |||||| ||| Sbjct 414 ACCCTGCCCTTGATGCCTCTCCGCCATCTCCTGAATCCGCTATCCTCAAAGATCCATTGC 473 Query 478 CGCCTCAGCCACCACTAGAAGGCGACAAAACCCCGAGCCCTCCTCAAAGTGGTGTGAGAT 537 ||||| |||||||| ||||||| || |||||||||||||||||| |||||||||| | Sbjct 474 TGCCTCCGCCACCACCAGAAGGCAACGAAACCCCGAGCCCTCCTCGAAGTGGTGTGCCAA 533 Query 538 CACAAACACCAGAGAACCCTCCTGCTATTACTCCTTTGCCTCTACCTCTGGCTCCACCTC 597 ||||||||||||||| ||| |||||||| ||||| ||||| |||| ||||||||| ||| Sbjct 534 CACAAACACCAGAGACCCCACCTGCTATCACTCCCCTGCCTGTACCACTGGCTCCAGCTC 593 Query 598 CATCT-C--CTCCTCC---GTCTCCAGAAACTACAAAGAAGTCTTCCAAAGTTTATATGA 651 | ||| | ||||||| |||||||| |||||||||||||||| ||||||||||||||| Sbjct 594 CGTCTCCGTCTCCTCCTGTGTCTCCAGGAACTACAAAGAAGTCTCCCAAAGTTTATATGA 653 Query 652 TCGTCGGCATAGTCGTTGGCGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA 711 |||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 654 TCGTTGGCATAGTCGGTGGGGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA 713 Query 712 TCCTCAGTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGAGATGCTC 771 |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 714 TCCTCACTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGCGATGATC 773 Query 772 TTATCGCAGATGTTCCGAGGCTGCAGCTATCTGAGCTGCAAGCAGCCTGCGAAGATTTCA 831 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 774 TTATCACAGATGTTCCGAGGCTGCAGCTATCTGAGCTACAAGCAGCCTGCGAAGATTTCA 833 Query 832 GTAACGTCATCGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG 891 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 GTAATGTCATAGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG 893 Query 892 CTGAAATCGCCGTTGTGTCTGTCGCAGCTGGTTCTCGTGCAGCCTGGTCCACCGCCATGG 951 |||||||||| || |||||| | | || ||||||||| ||| |||||||||| |||||| Sbjct 894 CTGAAATCGCTGTGGTGTCTATTGTGGCCGGTTCTCGTTCAGACTGGTCCACCACCATGG 953 Query 952 AAACACAGTTGCTACAAAAGATGCATAACTTATCCAAAGTGGATCATAAGAACTTTCTGA 1011 | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| Sbjct 954 ACACACAGTTGCTACAAAAGATGCATAATTTATCCAAAGTGGATCACAAGAACTTTTTGA 1013 Query 1012 ATGTGATTGGTTATTGCCATAATGAAGAGCCCTTTAA-CAGAATGCTGGTTTTTGAATAC 1070 ||||||| |||||||||| | | ||||||||||| || | |||||||||||||||||||| Sbjct 1014 ATGTGATCGGTTATTGCCTTGAGGAAGAGCCCTTCAAGC-GAATGCTGGTTTTTGAATAC 1072 Query 1071 GCTCCCAATGGATCCCTGTCCGAGCATCTGCACTCTCAACACGTGGAGCACTTGGACTGG 1130 |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1073 GCTCCCAATGGATCACTCTCCGAGCATCTGCACTCTCAATACGTGGAGCACTTGGACTGG 1132 Query 1131 CCTACCAGACTCAGAATCTTCATGGGAATAGCTTACTGTCTAGAGCACATGCTCAATCTC 1190 |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1133 CCTACCAGACTCAGAATCGTCATGGGAATAGCTTACTGTCTAGAGCACATGCACAATCTT 1192 Query 1191 AACCCACCCATCTTGCACTCTAATTTGGACTCCTCTTCTGTCTACTTGACTGAAGACAAC 1250 |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1193 AACCCACCCATCTTGCTCTCCAATTTGGACTCCTCTTCTGTGTACTTGACTGAAGACAAC 1252 Query 1251 GCCGCCAAAGTCTCCGACTTTTCTGTCATCAACTCCATCTTTCCCGCTAAGGAGGGTTCC 1310 |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 1253 GCCGCCAAAGTCTCTGACTTTTCTGTCATCAACTCCATATTTCCCTCTAAGGAGGGTTCC 1312 Query 1311 TCGAGCAAGAACCTTCTAGAACCCTCATTACTTGATACCCAGACCAACGTCTTTAACTTT 1370 |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| Sbjct 1313 TCGAGCAAGAACCTTCTAGAACCCTCGTTACTTGATCCCCATACCAACGTCTTTAACTTT 1372 Query 1371 GGTGCCGTTGTGTTCGAAATCATCAGTGGGAAGTTACCAGACCCGGATTCTTTGTTTCTC 1430 ||||||||| | ||||||||||||||||| || |||||||||||||||||| || ||||| Sbjct 1373 GGTGCCGTTTTATTCGAAATCATCAGTGGAAAATTACCAGACCCGGATTCTATGCTTCTC 1432 Query 1431 GAGCCCAAGCCCGCAAGAGATATTGTGGACCCGACACTGAAAACGTTTCAGGAGGATGTT 1490 || ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1433 GAACCCAAGCCCACAAGAGATATTGTGGACCCGACACTGAAAACATTTCAGGAAAATGTT 1492 Query 1491 GTTGAGAGACTGTTGGAGGTGGTTAGACAGTGTATGAATCCACACTCAGCTCAGCGGCCA 1550 |||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||| Sbjct 1493 GTTGAGAGACTGTTGGAGGTGGTTAGGCAGTGTTTGAATCCATACTCAGATCAGCGGCCG 1552 Query 1551 ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA 1610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA 1612 Query 1611 ATGCCGAGACTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC 1670 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 ATGCCGAGGCTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC 1672 Query 1671 TAAAGAGAAAGAAGCCGTCCTTTTAGGTGTCCCCTGTATATATATACACAAATGACACTG 1730 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1673 TAAAGAGAAAGGAGCCGTCCTTTTAGGTGTCCCCTGTATATATA--CACAAATGACACTG 1730 Query 1731 --AAGTGATGATCATCttttttttttGTTCCTCTGCATTAAAAGACTCTTCACTG-ATAC 1787 ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| Sbjct 1731 TGAAGTGATGATCATCTTTTTTT---GTTCCTCTGCATTAAAAGACTCTTTACTGTATA- 1786 Query 1788 Taa-aaaaaGTTGGTTTTGCAT 1808 || |||||||||||||||||| Sbjct 1787 TACTAAAAAGTTGGTTTTGCAT 1808 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89457371190 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5