BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495975
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58540.1 | Symbols: | Protein kinase superfamily protein | ... 2525 0.0
> AT5G58540.1 | Symbols: | Protein kinase superfamily protein
| chr5:23663180-23665316 FORWARD LENGTH=1809
Length=1809
Score = 2525 bits (1367), Expect = 0.0
Identities = 1675/1822 (92%), Gaps = 28/1822 (2%)
Strand=Plus/Plus
Query 1 ATAATAAACTTCAAACTGTTGTTGCTTTTCTAAAAGAAAAATCTTAAAGAGAGTAATGAA 60
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1 ATAATAAACTTCAAACTGTTGTTTCTTTTAGAAAAGAAAAATCTT-AAGAGAGTAATGAA 59
Query 61 AATTGGTCGTTGGGTTTATGATAATTAAA-AAAGGTTGAAAGAGTATTAGCAACCGTTGA 119
|||||||||||||||||| |||||||||| |||||||||||||| | | ||||||||||
Sbjct 60 AATTGGTCGTTGGGTTTACGATAATTAAACAAAGGTTGAAAGAGCA-T--CAACCGTTGA 116
Query 120 TTAGTCTTCTTGATCCTCAACGACGACTTCAACTGCTCCTCCAACATACTCTTCCTTCTT 179
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 117 TTAGTCTTCTTAATCCTCAACGACGAATTCAACTGCTCCTCCAATATTCTCTTCCTTCTT 176
Query 180 CCTTCTTTCGGTAACAAACAACAGAAGCAAACAAATCAATATCCTATGAGTTCCAATAGA 239
||||||||||| ||| ||| ||||||||||| |||||||| ||||||||||||||| |||
Sbjct 177 CCTTCTTTCGGAAAC-AACCACAGAAGCAAAGAAATCAATCTCCTATGAGTTCCAAGAGA 235
Query 240 CGGCGGAGATTCAATCTCCGAACAGTATTCTCCATCATCTTCCTCACCTTTCTTCCTCTG 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 236 CGGCGGAGATTCAATCTCCGAACAGTGTTCTCCATCATCTTCCTCACCTTTCTTCCTCTG 295
Query 300 ACTCTTAACTCTCAAGAGATTGTAGAAGTCTTTGGTTCTTCTCAAGATCACTTATCGATC 359
| |||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||
Sbjct 296 AATCTTAACTCTCAAGAGATTGTAGAGGTCTTTGATTCTTCTCAAGATCACTTCTTGATC 355
Query 360 C-AGCCCAGAGTTTATGGGAACCGTCGCAG-CTTGATTGATACACCTCTTCCTGGCAAAT 417
| | ||| ||||||||| ||||| |||||| ||| || |||||||||||||||||||||
Sbjct 356 CAATCCC-GAGTTTATGCGAACCATCGCAGCCTT-ATCGATACACCTCTTCCTGGCAAAG 413
Query 418 CCCCTGCCCTGGATGCCTCCCCGCCATCTCCGGAATCTGCAATCTTCAGAGATCCCCTGC 477
||||||||| |||||||| ||||||||||| ||||| || ||| ||| |||||| |||
Sbjct 414 ACCCTGCCCTTGATGCCTCTCCGCCATCTCCTGAATCCGCTATCCTCAAAGATCCATTGC 473
Query 478 CGCCTCAGCCACCACTAGAAGGCGACAAAACCCCGAGCCCTCCTCAAAGTGGTGTGAGAT 537
||||| |||||||| ||||||| || |||||||||||||||||| |||||||||| |
Sbjct 474 TGCCTCCGCCACCACCAGAAGGCAACGAAACCCCGAGCCCTCCTCGAAGTGGTGTGCCAA 533
Query 538 CACAAACACCAGAGAACCCTCCTGCTATTACTCCTTTGCCTCTACCTCTGGCTCCACCTC 597
||||||||||||||| ||| |||||||| ||||| ||||| |||| ||||||||| |||
Sbjct 534 CACAAACACCAGAGACCCCACCTGCTATCACTCCCCTGCCTGTACCACTGGCTCCAGCTC 593
Query 598 CATCT-C--CTCCTCC---GTCTCCAGAAACTACAAAGAAGTCTTCCAAAGTTTATATGA 651
| ||| | ||||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 594 CGTCTCCGTCTCCTCCTGTGTCTCCAGGAACTACAAAGAAGTCTCCCAAAGTTTATATGA 653
Query 652 TCGTCGGCATAGTCGTTGGCGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA 711
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TCGTTGGCATAGTCGGTGGGGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA 713
Query 712 TCCTCAGTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGAGATGCTC 771
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 714 TCCTCACTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGCGATGATC 773
Query 772 TTATCGCAGATGTTCCGAGGCTGCAGCTATCTGAGCTGCAAGCAGCCTGCGAAGATTTCA 831
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 774 TTATCACAGATGTTCCGAGGCTGCAGCTATCTGAGCTACAAGCAGCCTGCGAAGATTTCA 833
Query 832 GTAACGTCATCGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG 891
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GTAATGTCATAGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG 893
Query 892 CTGAAATCGCCGTTGTGTCTGTCGCAGCTGGTTCTCGTGCAGCCTGGTCCACCGCCATGG 951
|||||||||| || |||||| | | || ||||||||| ||| |||||||||| ||||||
Sbjct 894 CTGAAATCGCTGTGGTGTCTATTGTGGCCGGTTCTCGTTCAGACTGGTCCACCACCATGG 953
Query 952 AAACACAGTTGCTACAAAAGATGCATAACTTATCCAAAGTGGATCATAAGAACTTTCTGA 1011
| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 954 ACACACAGTTGCTACAAAAGATGCATAATTTATCCAAAGTGGATCACAAGAACTTTTTGA 1013
Query 1012 ATGTGATTGGTTATTGCCATAATGAAGAGCCCTTTAA-CAGAATGCTGGTTTTTGAATAC 1070
||||||| |||||||||| | | ||||||||||| || | ||||||||||||||||||||
Sbjct 1014 ATGTGATCGGTTATTGCCTTGAGGAAGAGCCCTTCAAGC-GAATGCTGGTTTTTGAATAC 1072
Query 1071 GCTCCCAATGGATCCCTGTCCGAGCATCTGCACTCTCAACACGTGGAGCACTTGGACTGG 1130
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1073 GCTCCCAATGGATCACTCTCCGAGCATCTGCACTCTCAATACGTGGAGCACTTGGACTGG 1132
Query 1131 CCTACCAGACTCAGAATCTTCATGGGAATAGCTTACTGTCTAGAGCACATGCTCAATCTC 1190
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1133 CCTACCAGACTCAGAATCGTCATGGGAATAGCTTACTGTCTAGAGCACATGCACAATCTT 1192
Query 1191 AACCCACCCATCTTGCACTCTAATTTGGACTCCTCTTCTGTCTACTTGACTGAAGACAAC 1250
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1193 AACCCACCCATCTTGCTCTCCAATTTGGACTCCTCTTCTGTGTACTTGACTGAAGACAAC 1252
Query 1251 GCCGCCAAAGTCTCCGACTTTTCTGTCATCAACTCCATCTTTCCCGCTAAGGAGGGTTCC 1310
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1253 GCCGCCAAAGTCTCTGACTTTTCTGTCATCAACTCCATATTTCCCTCTAAGGAGGGTTCC 1312
Query 1311 TCGAGCAAGAACCTTCTAGAACCCTCATTACTTGATACCCAGACCAACGTCTTTAACTTT 1370
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 1313 TCGAGCAAGAACCTTCTAGAACCCTCGTTACTTGATCCCCATACCAACGTCTTTAACTTT 1372
Query 1371 GGTGCCGTTGTGTTCGAAATCATCAGTGGGAAGTTACCAGACCCGGATTCTTTGTTTCTC 1430
||||||||| | ||||||||||||||||| || |||||||||||||||||| || |||||
Sbjct 1373 GGTGCCGTTTTATTCGAAATCATCAGTGGAAAATTACCAGACCCGGATTCTATGCTTCTC 1432
Query 1431 GAGCCCAAGCCCGCAAGAGATATTGTGGACCCGACACTGAAAACGTTTCAGGAGGATGTT 1490
|| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1433 GAACCCAAGCCCACAAGAGATATTGTGGACCCGACACTGAAAACATTTCAGGAAAATGTT 1492
Query 1491 GTTGAGAGACTGTTGGAGGTGGTTAGACAGTGTATGAATCCACACTCAGCTCAGCGGCCA 1550
|||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||
Sbjct 1493 GTTGAGAGACTGTTGGAGGTGGTTAGGCAGTGTTTGAATCCATACTCAGATCAGCGGCCG 1552
Query 1551 ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA 1612
Query 1611 ATGCCGAGACTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC 1670
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 ATGCCGAGGCTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC 1672
Query 1671 TAAAGAGAAAGAAGCCGTCCTTTTAGGTGTCCCCTGTATATATATACACAAATGACACTG 1730
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1673 TAAAGAGAAAGGAGCCGTCCTTTTAGGTGTCCCCTGTATATATA--CACAAATGACACTG 1730
Query 1731 --AAGTGATGATCATCttttttttttGTTCCTCTGCATTAAAAGACTCTTCACTG-ATAC 1787
||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1731 TGAAGTGATGATCATCTTTTTTT---GTTCCTCTGCATTAAAAGACTCTTTACTGTATA- 1786
Query 1788 Taa-aaaaaGTTGGTTTTGCAT 1808
|| ||||||||||||||||||
Sbjct 1787 TACTAAAAAGTTGGTTTTGCAT 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89457371190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5