BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495975

Length=1808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58540.1 | Symbols:  | Protein kinase superfamily protein | ...  2525    0.0  


> AT5G58540.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:23663180-23665316 FORWARD LENGTH=1809
Length=1809

 Score = 2525 bits (1367),  Expect = 0.0
 Identities = 1675/1822 (92%), Gaps = 28/1822 (2%)
 Strand=Plus/Plus

Query  1     ATAATAAACTTCAAACTGTTGTTGCTTTTCTAAAAGAAAAATCTTAAAGAGAGTAATGAA  60
             ||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||
Sbjct  1     ATAATAAACTTCAAACTGTTGTTTCTTTTAGAAAAGAAAAATCTT-AAGAGAGTAATGAA  59

Query  61    AATTGGTCGTTGGGTTTATGATAATTAAA-AAAGGTTGAAAGAGTATTAGCAACCGTTGA  119
             |||||||||||||||||| |||||||||| |||||||||||||| | |  ||||||||||
Sbjct  60    AATTGGTCGTTGGGTTTACGATAATTAAACAAAGGTTGAAAGAGCA-T--CAACCGTTGA  116

Query  120   TTAGTCTTCTTGATCCTCAACGACGACTTCAACTGCTCCTCCAACATACTCTTCCTTCTT  179
             ||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct  117   TTAGTCTTCTTAATCCTCAACGACGAATTCAACTGCTCCTCCAATATTCTCTTCCTTCTT  176

Query  180   CCTTCTTTCGGTAACAAACAACAGAAGCAAACAAATCAATATCCTATGAGTTCCAATAGA  239
             ||||||||||| ||| ||| ||||||||||| |||||||| ||||||||||||||| |||
Sbjct  177   CCTTCTTTCGGAAAC-AACCACAGAAGCAAAGAAATCAATCTCCTATGAGTTCCAAGAGA  235

Query  240   CGGCGGAGATTCAATCTCCGAACAGTATTCTCCATCATCTTCCTCACCTTTCTTCCTCTG  299
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  236   CGGCGGAGATTCAATCTCCGAACAGTGTTCTCCATCATCTTCCTCACCTTTCTTCCTCTG  295

Query  300   ACTCTTAACTCTCAAGAGATTGTAGAAGTCTTTGGTTCTTCTCAAGATCACTTATCGATC  359
             | |||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||
Sbjct  296   AATCTTAACTCTCAAGAGATTGTAGAGGTCTTTGATTCTTCTCAAGATCACTTCTTGATC  355

Query  360   C-AGCCCAGAGTTTATGGGAACCGTCGCAG-CTTGATTGATACACCTCTTCCTGGCAAAT  417
             | | ||| ||||||||| ||||| |||||| ||| || ||||||||||||||||||||| 
Sbjct  356   CAATCCC-GAGTTTATGCGAACCATCGCAGCCTT-ATCGATACACCTCTTCCTGGCAAAG  413

Query  418   CCCCTGCCCTGGATGCCTCCCCGCCATCTCCGGAATCTGCAATCTTCAGAGATCCCCTGC  477
              ||||||||| |||||||| ||||||||||| ||||| || ||| ||| ||||||  |||
Sbjct  414   ACCCTGCCCTTGATGCCTCTCCGCCATCTCCTGAATCCGCTATCCTCAAAGATCCATTGC  473

Query  478   CGCCTCAGCCACCACTAGAAGGCGACAAAACCCCGAGCCCTCCTCAAAGTGGTGTGAGAT  537
              ||||| |||||||| ||||||| || |||||||||||||||||| ||||||||||  | 
Sbjct  474   TGCCTCCGCCACCACCAGAAGGCAACGAAACCCCGAGCCCTCCTCGAAGTGGTGTGCCAA  533

Query  538   CACAAACACCAGAGAACCCTCCTGCTATTACTCCTTTGCCTCTACCTCTGGCTCCACCTC  597
             ||||||||||||||| ||| |||||||| |||||  ||||| |||| ||||||||| |||
Sbjct  534   CACAAACACCAGAGACCCCACCTGCTATCACTCCCCTGCCTGTACCACTGGCTCCAGCTC  593

Query  598   CATCT-C--CTCCTCC---GTCTCCAGAAACTACAAAGAAGTCTTCCAAAGTTTATATGA  651
             | ||| |  |||||||   |||||||| |||||||||||||||| |||||||||||||||
Sbjct  594   CGTCTCCGTCTCCTCCTGTGTCTCCAGGAACTACAAAGAAGTCTCCCAAAGTTTATATGA  653

Query  652   TCGTCGGCATAGTCGTTGGCGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA  711
             |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  654   TCGTTGGCATAGTCGGTGGGGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA  713

Query  712   TCCTCAGTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGAGATGCTC  771
             |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct  714   TCCTCACTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGCGATGATC  773

Query  772   TTATCGCAGATGTTCCGAGGCTGCAGCTATCTGAGCTGCAAGCAGCCTGCGAAGATTTCA  831
             ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  774   TTATCACAGATGTTCCGAGGCTGCAGCTATCTGAGCTACAAGCAGCCTGCGAAGATTTCA  833

Query  832   GTAACGTCATCGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG  891
             |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  834   GTAATGTCATAGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG  893

Query  892   CTGAAATCGCCGTTGTGTCTGTCGCAGCTGGTTCTCGTGCAGCCTGGTCCACCGCCATGG  951
             |||||||||| || |||||| | |  || ||||||||| ||| |||||||||| ||||||
Sbjct  894   CTGAAATCGCTGTGGTGTCTATTGTGGCCGGTTCTCGTTCAGACTGGTCCACCACCATGG  953

Query  952   AAACACAGTTGCTACAAAAGATGCATAACTTATCCAAAGTGGATCATAAGAACTTTCTGA  1011
             | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct  954   ACACACAGTTGCTACAAAAGATGCATAATTTATCCAAAGTGGATCACAAGAACTTTTTGA  1013

Query  1012  ATGTGATTGGTTATTGCCATAATGAAGAGCCCTTTAA-CAGAATGCTGGTTTTTGAATAC  1070
             ||||||| |||||||||| | | ||||||||||| || | ||||||||||||||||||||
Sbjct  1014  ATGTGATCGGTTATTGCCTTGAGGAAGAGCCCTTCAAGC-GAATGCTGGTTTTTGAATAC  1072

Query  1071  GCTCCCAATGGATCCCTGTCCGAGCATCTGCACTCTCAACACGTGGAGCACTTGGACTGG  1130
             |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1073  GCTCCCAATGGATCACTCTCCGAGCATCTGCACTCTCAATACGTGGAGCACTTGGACTGG  1132

Query  1131  CCTACCAGACTCAGAATCTTCATGGGAATAGCTTACTGTCTAGAGCACATGCTCAATCTC  1190
             |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| 
Sbjct  1133  CCTACCAGACTCAGAATCGTCATGGGAATAGCTTACTGTCTAGAGCACATGCACAATCTT  1192

Query  1191  AACCCACCCATCTTGCACTCTAATTTGGACTCCTCTTCTGTCTACTTGACTGAAGACAAC  1250
             |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  1193  AACCCACCCATCTTGCTCTCCAATTTGGACTCCTCTTCTGTGTACTTGACTGAAGACAAC  1252

Query  1251  GCCGCCAAAGTCTCCGACTTTTCTGTCATCAACTCCATCTTTCCCGCTAAGGAGGGTTCC  1310
             |||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct  1253  GCCGCCAAAGTCTCTGACTTTTCTGTCATCAACTCCATATTTCCCTCTAAGGAGGGTTCC  1312

Query  1311  TCGAGCAAGAACCTTCTAGAACCCTCATTACTTGATACCCAGACCAACGTCTTTAACTTT  1370
             |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct  1313  TCGAGCAAGAACCTTCTAGAACCCTCGTTACTTGATCCCCATACCAACGTCTTTAACTTT  1372

Query  1371  GGTGCCGTTGTGTTCGAAATCATCAGTGGGAAGTTACCAGACCCGGATTCTTTGTTTCTC  1430
             ||||||||| | ||||||||||||||||| || |||||||||||||||||| || |||||
Sbjct  1373  GGTGCCGTTTTATTCGAAATCATCAGTGGAAAATTACCAGACCCGGATTCTATGCTTCTC  1432

Query  1431  GAGCCCAAGCCCGCAAGAGATATTGTGGACCCGACACTGAAAACGTTTCAGGAGGATGTT  1490
             || ||||||||| ||||||||||||||||||||||||||||||| ||||||||  |||||
Sbjct  1433  GAACCCAAGCCCACAAGAGATATTGTGGACCCGACACTGAAAACATTTCAGGAAAATGTT  1492

Query  1491  GTTGAGAGACTGTTGGAGGTGGTTAGACAGTGTATGAATCCACACTCAGCTCAGCGGCCA  1550
             |||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||| 
Sbjct  1493  GTTGAGAGACTGTTGGAGGTGGTTAGGCAGTGTTTGAATCCATACTCAGATCAGCGGCCG  1552

Query  1551  ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA  1610
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1553  ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA  1612

Query  1611  ATGCCGAGACTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC  1670
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1613  ATGCCGAGGCTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC  1672

Query  1671  TAAAGAGAAAGAAGCCGTCCTTTTAGGTGTCCCCTGTATATATATACACAAATGACACTG  1730
             ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  1673  TAAAGAGAAAGGAGCCGTCCTTTTAGGTGTCCCCTGTATATATA--CACAAATGACACTG  1730

Query  1731  --AAGTGATGATCATCttttttttttGTTCCTCTGCATTAAAAGACTCTTCACTG-ATAC  1787
               |||||||||||||||||||||   |||||||||||||||||||||||| |||| ||| 
Sbjct  1731  TGAAGTGATGATCATCTTTTTTT---GTTCCTCTGCATTAAAAGACTCTTTACTGTATA-  1786

Query  1788  Taa-aaaaaGTTGGTTTTGCAT  1808
             ||  ||||||||||||||||||
Sbjct  1787  TACTAAAAAGTTGGTTTTGCAT  1808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 89457371190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5