BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495981
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58580.1 | Symbols: ATL63, TL63 | TOXICOS EN LEVADURA 63 | c... 1216 0.0
> AT5G58580.1 | Symbols: ATL63, TL63 | TOXICOS EN LEVADURA 63 |
chr5:23676906-23677832 REVERSE LENGTH=927
Length=927
Score = 1216 bits (658), Expect = 0.0
Identities = 853/942 (91%), Gaps = 33/942 (4%)
Strand=Plus/Plus
Query 1 ATGAGCGAAGAAGAAGACGGCTCAATGAGTGTTAAAAGCAGTCTCTCAAGCTTCCTCAAG 60
||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGTGAAGAAGACGGCGGCTCAATGAGTGTCAAAAGCAGTCTCTCAAGCTTCCTCAAG 60
Query 61 ATCTTATCTTCTTACAACTCCAATGTCCTTTTAGCTGCTCTAGTCTTCCTTCTCTTAGTC 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ATCTTATCTTCTTACAATTCCAATGTTCTTTTAGCTGCTCTAGTCTTCCTTCTCTTAGTC 120
Query 121 GTCCTCTTTGTCTTGCTTCTCCATTTCTACGCTCGCTTTTTCTGGTCTCCCTCTCATCAA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCCTCTTCGTCTTGCTTCTCCATTTCTACGCTCGCTTTTTCTGGTCTCCCTCTCATCAA 180
Query 181 GATTTCTCCGCCGCCGGTAGAAACCGCCGGAGAAGACGAAGAAACCGGAGAAGAACAGTA 240
|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTCTCCGCCGCCGCTAGACATCGCCGGAGAAGACGAAGAAACCGGAGAAGAACAGTG 240
Query 241 ACGACAACAAGAATCATACCTTCTCTCTCACTCGGAGGTTTCGATGGTGGAGTTAATGCT 300
||||||||||||||||||||||||||| ||||||||||||| |||| ||||| | || ||
Sbjct 241 ACGACAACAAGAATCATACCTTCTCTCCCACTCGGAGGTTTTGATGATGGAG-T-AT-CT 297
Query 301 CCTGCTACTGCTACTACTGCTGCAACAAACGATGACAAAGGTTTGGATTCTTCAGTGATT 360
| || | ||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 --T-CTCCAGCTGCTA---CTGCAACAAGGGATGACAAAGGTTTGGATTCTTCAGTGATT 351
Query 361 TCTTCGATTCCTCTGTTTGTTTACgaagaagacgaggaagaggaggaagaagaagaagag 420
||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 352 TCTTCAATTCCTCTGTTTGTTTACGAAGAAAACGAGGAAGAGGAGGATGAAGAAGAAGAG 411
Query 421 TGTGCGATATGTTTGGGTTTGTGGGAAGCTGGTGATTTTGGAAGAAAGTTGAGAAATTGT 480
|||| |||||||||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 412 TGTGTGATATGTTTGGGGTTATGGGAAGCTGGAGATTTTGGTAGAAAGTTGAGAAATTGT 471
Query 481 GGACATGGGTTTCACGTAGAGTGTATAGATATGTGGTTGTCTTCTCATTCTACTTGTCCT 540
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 472 GGACATGGGTTTCACGTAGAGTGTATAGATATGTGGTTGTCCTCTCATTCCACGTGTCCT 531
Query 541 CTCTGTCGATCCCCTGTTCTCGCCGTGGCCTCCGATGAAGAAAACCTCAAGCCGGCCGTT 600
|||||||||||||||||||| |||| | ||||||||||||||| || |||| |||||||
Sbjct 532 CTCTGTCGATCCCCTGTTCTTGCCGCCGTCTCCGATGAAGAAAATCTTAAGCTGGCCGTT 591
Query 601 AACGCCGTCGAAGAAGAAGCAGAGGTTAGATTGCAAATTTTTCCAACCGGAGAAGACGAA 660
|||||||||||||||||||||||||||||||| ||||| | |||| | |||||| ||||
Sbjct 592 AACGCCGTCGAAGAAGAAGCAGAGGTTAGATTACAAATGTCTCCAGCGGGAGAAAACGAG 651
Query 661 AATAACG-C-C-GGTGATCGAAGATTTTCAGTGTCTCTTCCTGTAATGGAGGAGGATGAT 717
| |||| | | |||||||| ||| ||||| |||||||| |||||||||| || |||||
Sbjct 652 AGCAACGTCTCCGGTGATCGGAGAGTTTCACTGTCTCTTTCTGTAATGGA--AG-ATGAT 708
Query 718 CTCAAAACAGGGGATGATGACGGAGACGTCGGAGAAGAAGAGGTTAGAATTGAAGTGTTT 777
||||||||||||||||| || | | ||||||||||||||||||||||||||||||
Sbjct 709 CTCAAAACAGGGGATGA---CG-A----T-GGAGAAGAAGAGGTTAGAATTGAAGTGTTT 759
Query 778 GATGATGA-G-G-AGATCAACGGTGGAGGATCAACAAGTGATCGGAGAAGATCAATGTCA 834
|||||||| | | ||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 760 GATGATGATGAGGAGATCAACGATGGAGGAACAAGAAGTGATCGGAGAAGATCAATGTCA 819
Query 835 ATGACGTCATCAGCATCGAGTTCGTTGATGAGAATGTTAAGTAGTAGTAG-A-T----CG 888
|||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct 820 ATGACGTCATCAGCATCGAGTTCGTTGATGAGGATGTTAAGTAGTAGTAGTAGTAGATCG 879
Query 889 GAGCGTAGCAAAGTGTTCCCGACGGCGAGGCAAGATTCGTCT 930
||||||| |||||||||||||||||||||||||||||| |||
Sbjct 880 GAGCGTAACAAAGTGTTCCCGACGGCGAGGCAAGATTCATCT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5