BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495984
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58600.1 | Symbols: PMR5, TBL44 | Plant protein of unknown f... 2163 0.0
> AT5G58600.1 | Symbols: PMR5, TBL44 | Plant protein of unknown
function (DUF828) | chr5:23683791-23685725 REVERSE LENGTH=1408
Length=1408
Score = 2163 bits (1171), Expect = 0.0
Identities = 1321/1392 (95%), Gaps = 16/1392 (1%)
Strand=Plus/Plus
Query 1 ATTATTTTACAGCTTCCtttttttGTTTTCCGCGAGAAAGCAAAAAAGATGGGTTCTCTT 60
||||||||||||||||| ||||||||||||| ||| ||||||||| | ||||||||||||
Sbjct 1 ATTATTTTACAGCTTCC-TTTTTTGTTTTCCACGAAAAAGCAAAAGA-ATGGGTTCTCTT 58
Query 61 C-T--TCTTCTTGGCATCTC---AGTCTCCGCCATTTTCTTTCT-GTTGCTTCAACAACC 113
| | ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 59 CTTCCTCTTCTTGGCATCTCAGTAGTCTCCGCCATTTTCTTTCTGGTT-CTTCAACAACC 117
Query 114 AGAACAATCTTCTTCAGCCATTATACTGAGCTTGAAGAAACGCCATGGAAG---CTCTGG 170
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 118 AGAACAATCTTCTTCAGCCATTATACTGAGCTTGAAGAAACGCCATGGAAGCTCCTCTGG 177
Query 171 TAGTAGTGGTAACCAGTACAGCTCGAGCAGACCATCAGCTGGTTTCCAAGGGAACAGGAG 230
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 178 TAGTAGTGGTAACCAGTACAGTTCAAGCAGACCATCAGCTGGTTTCCAAGGGAACAGGAG 237
Query 231 CACGTGCTCTCTCTTCCTCGGCACGTGGGTTCGTGATAACTCTTACCCTCTCTATAAACC 290
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 CACGTGCTCTCTCTTCCTCGGCACGTGGGTTCGTGATAACTCTTATCCTCTCTATAAACC 297
Query 291 GGCGGATTGTCCCGGCGTCGTTGAGCCTGAGTTCGATTGCCAGATGTACGGACGTCCTGA 350
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 298 GGCGGATTGTCCCGGCGTCGTTGAGCCTGAGTTCGATTGTCAGATGTACGGTCGTCCTGA 357
Query 351 CTCTGACTACCTCAAGTATCGATGGCAACCTCAGAATTGCAATTTACCCACGTTCAATGG 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTCTGACTACCTCAAGTATCGATGGCAACCTCAGAATTGCAATTTACCCACGTTCAATGG 417
Query 411 TGCCCAGTTTCTGTTGAAAATGAAGGGCAAAACCATAATGTTTGCGGGTGATTCATTGGG 470
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGCTCAGTTTCTGTTGAAAATGAAGGGCAAAACCATAATGTTTGCGGGTGATTCATTGGG 477
Query 471 TAAGAATCAATGGGAGTCTTTGATCTGTCTCATTGTTTCATCTGCACCGTCCACTCGGAC 530
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 478 GAAGAATCAATGGGAGTCTTTGATCTGCCTTATTGTTTCATCTGCACCGTCCACTCGGAC 537
Query 531 CGAAATGAGGAGAGGCCTCCCTCTTTCCACCTTCAGATTCTTGGATTATGGGATAACCAT 590
||||||| |||||| | ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 538 AGAAATGACCAGAGGCTTGCCTCTCTCCACCTTCAGATTCTTGGATTATGGGATAACAAT 597
Query 591 GTCGTTTTACAAAGCTCCGTTCTTGGTGGACATAGATGCTGTTCAAGGCAAGCGAGTGTT 650
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 GTCATTTTACAAAGCTCCGTTCTTGGTGGACATAGATGCTGTTCAAGGCAAGCGTGTGTT 657
Query 651 GAAACTAGATGAGATCTCTGGCAATGCCAACGCTTGGCATGACGCTGATCTCCTCATCTT 710
||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 658 GAAGCTGGATGAGATCTCTGGTAATGCCAATGCTTGGCATGACGCTGATCTCCTCATCTT 717
Query 711 CAACACCGGTCACTGGTGGAGCCACACCGGATCTACGCAAGGATGGGACTTGATTCAATC 770
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 CAACACTGGTCACTGGTGGAGCCACACCGGATCTATGCAAGGATGGGACTTGATTCAATC 777
Query 771 AGGCAATTCTTATTACCAAGACATGGACCGTTTCGTCGCAATGGAGAAAGCACTTCGTAC 830
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 778 AGGCAATTCTTATTACCAAGACATGGACCGTTTTGTGGCAATGGAGAAAGCACTTCGTAC 837
Query 831 TTGGGCTTATTGGGTCGAAACTCACGTTGATAGATCCCGAACACAAGTCTTGTTCCTCTC 890
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTGGGCGTATTGGGTCGAAACTCACGTTGATAGATCCCGAACACAAGTCTTGTTCCTCTC 897
Query 891 CATTTCTCCAACACACGACAACCCGAGTGACTGGGCGGCATCATCGTCTTCAGGATCCAA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CATTTCTCCAACACACGACAACCCGAGTGACTGGGCGGCATCATCGTCTTCAGGATCCAA 957
Query 951 GAACTGCTACGGAGAAACAGAACCAATCACAGGAACAGCTTATCCAGTTAGCTCATACAC 1010
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 958 GAACTGCTACGGAGAAACAGAACCGATCACAGGAACAGCTTATCCAGTGAGCTCCTACAC 1017
Query 1011 AGATCAGCTAAGATCAGTGATTGTTGAAGTCCTTCACGGTATGCATAATCCTGC-TTATC 1069
|||||||||||||||||||||||||||||| |||||||| ||||| ||||| || || ||
Sbjct 1018 AGATCAGCTAAGATCAGTGATTGTTGAAGTGCTTCACGGGATGCACAATCCGGCGTT-TC 1076
Query 1070 TTCTCGACATAACGCTCCTGTCTTCATTCAGAAAAGACGGTCACCCGTCAGTCTACAGCG 1129
||||||||||||| ||||| ||||| | |||||||||||||| |||||||| |||||||
Sbjct 1077 TTCTCGACATAACACTCCTCTCTTCCCTAAGAAAAGACGGTCATCCGTCAGTATACAGCG 1136
Query 1130 GTCTCATTAGCGGTTCACAAAGGTCTAGACCAGACCAGTCTGCAGATTGTAGCCATTGGT 1189
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCCTCATTAGCGGTTCACAAAGGTCTAGACCAGACCAGTCTGCAGATTGTAGCCATTGGT 1196
Query 1190 GTTTGCCGGGTCTACCGGATACATGGAACCAGTTGTTGTATACGCTTCTCATCTATTAGC 1249
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GTTTGCCTGGTTTACCTGATACATGGAACCAGTTGTTGTATACGCTTCTCATCTATTAGC 1256
Query 1250 TTCTTTTTAATTCTCCTTCAATCAAATTATCCGGTTAGAAATATTTTAACACATTTGAAG 1309
|||||||||| |||| ||| |||||||||| ||||||| |||||||||||||||| ||||
Sbjct 1257 TTCTTTTTAAATCTCTTTCCATCAAATTATTCGGTTAGTAATATTTTAACACATTCGAAG 1316
Query 1310 AGAGAATCTTAAAGATTAATCACGGAATCAGTCAATTGTATAAACTTTTTGAGGAAATTT 1369
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGAGAATCTTAA-GATTAATCACGGAATCAGTCAATTGTATAAACTTTTTGAGGAAATTT 1375
Query 1370 TCTTTCTAATGA 1381
|||||| |||||
Sbjct 1376 TCTTTCAAATGA 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5