BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495985
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58620.1 | Symbols: | zinc finger (CCCH-type) family protei... 2961 0.0
AT5G58630.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 139 1e-31
> AT5G58620.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr5:23693340-23696222 FORWARD LENGTH=2499
Length=2499
Score = 2961 bits (1603), Expect = 0.0
Identities = 1860/1979 (94%), Gaps = 38/1979 (2%)
Strand=Plus/Plus
Query 62 AATTGAGTA---GTTTAAAGGAAGTGAAGAGCGG-TTTTTGGTGGTGGTGGTCGAGAAAA 117
||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 107 AATTGAGTACTCGTTTAAAGGAAGTGAAGAGCGGTTTTTTGGTAGTGGTGGTCGAGAAAA 166
Query 118 GAGAG-CTTTTTCTTCTAT-TTTTTGCAGTGAAATCATTCGAGCGGGAAAAGATTGTTGC 175
||||| ||| || ||| | | | |||||||||| | ||||||||||||||||||||
Sbjct 167 GAGAGAGTTTGTC-TCTGTGACTCAG-AGTGAAATCAATAGAGCGGGAAAAGATTGTTGC 224
Query 176 ---TTTTTGCCATGGGAGTTGATGAGCTGTCTCACCTCAAATTCTCTCTTCTGCTAGAAT 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TTTTTTTTGCCATGGGAGTTGATGAGCTGTCTCACCTCAAATTCTCTCTTCTGCTAGAAT 284
Query 233 CATCGGCCTGCAATGATTTGTCTGGTTTTAAGTCTCTAGTTGAAGAAGAAGGTCTCGAGA 292
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 285 CATCAGCCTGCAATGATTTGTCCGGTTTTAAGTCTCTAGTTGAAGAAGAAGGTCTTGAGA 344
Query 293 GCATTGATGGCTCTGGTTTGTGGTATGGGAGGAGATTAGGATCAAAGAAGATGGGTTTTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GCATTGATGGCTCTGGTTTGTGGTATGGGAGGAGATTAGGATCAAAGAAGATGGGTTTTG 404
Query 353 AGGAGAGGACGCCTCTTATGATCGCTGCCTTGTTTGGAAGCAAAGAGGTCGTTGATTACA 412
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 405 AGGAGAGGACGCCTCTTATGATTGCTGCCTTGTTTGGAAGCAAAGAGGTTGTTGATTACA 464
Query 413 TCATTAGTACTGGTCTTGTTGACGTGAACCGGTCTTGTGGCTCTGATGGTGCCACGGCGC 472
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 465 TCATTAGTACTGGTCTTGTTGACGTGAACCGCTCTTGTGGCTCTGATGGTGCCACGGCTC 524
Query 473 TTCACTGTGCGGTCTCTGGCTTGTCTGCGAATAGCTTTGAGATCGTTACTCTTCTGCTGA 532
|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct 525 TTCACTGTGCGGTCTCTGGCTTGTCTGCCAATAGCCTTGAGATTGTTACTCTTCTGCTGA 584
Query 533 AGGGCTCTGCGGATCCGGATTCTTGTGATGCTTATGGCAACAAGCCTGGAGACATGATTT 592
||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 585 AGGGCTCTGCGAATCCGGATTCTTGTGATGCTTATGGTAACAAGCCTGGAGATGTGATTT 644
Query 593 TCCCGTGTTTGAGTCCGGTTTTTAGCGCAAGGATGAAGGTTTTGGAGCGTTTGTTGAAAG 652
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 645 TCCCTTGTTTGAGTCCGGTTTTTAGCGCGAGGATGAAGGTTTTGGAGCGTTTGTTGAAAG 704
Query 653 GAAATGATGATTTGAATGAAGTTAATGGGCAAGAAGAAGGAGAGCGAAAGGTTGAGGTAG 712
|||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||
Sbjct 705 GAAATGATGATTTGAATGAAGTTAATGGGCAAGAAGAAAGCGAGCCAGAGGTTGAGGT-- 762
Query 713 AGGTAGAGGTAGAGGTTTCTGTTTCACCTCCTCGGGGTTCTGAGAGGAAGGAGTATCCTG 772
| ||||| |||||||| | ||||||||||| |||||||||||||||||||| |
Sbjct 763 ---T-GAGGTTGAGGTTTC-G-----CCTCCTCGGGGGTCTGAGAGGAAGGAGTATCCGG 812
Query 773 TTGATCCCACGCTTCCAGATATCAAGAACGGTATCTATGGGACGGATGAGTTCCGGATGT 832
||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 813 TTGATCCAACGCTTCCTGATATCAAGAACGGTGTATATGGGACGGATGAGTTCCGGATGT 872
Query 833 ATGCTTTTAAGATCAAGCCGTGCTCTAGAGCATACTCGCACGACTGGACAGAATG-CCCG 891
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 873 ATGCTTTCAAGATCAAGCCGTGCTCTAGAGCATACTCTCACGACTGGACGGAATGTCCC- 931
Query 892 TTTGTTCATCCGGGTGAGAACGCAAGGAGGCGTGATCCAAGGAAGTACCATTACAGCTGT 951
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 932 TTTGTTCATCCGGGTGAGAACGCAAGGAGGCGTGATCCGAGGAAGTACCATTATAGTTGT 991
Query 952 GTCCCGTGTCCTGAATTCCGGAAAGGGTCTTGTTCCAGAGGTGATACTTGTGAGTATGCT 1011
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 992 GTCCCTTGTCCTGAATTCCGGAAGGGGTCTTGTTCCAGAGGTGATACTTGCGAGTATGCT 1051
Query 1012 CACGGTATCTTTGAGTGCTGGCTTCACCCAGCTCAGTACCGGACCCGTCTCTGCAAGGAC 1071
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1052 CATGGTATCTTTGAGTGCTGGCTTCACCCGGCTCAGTACCGGACTCGTCTCTGCAAGGAC 1111
Query 1072 GAGACGAATTGTTCGAGAAGAGTTTGTTTCTTTGCCCATAAACCTGAAGAACTGCGGCCG 1131
||||||||||| |||||||||||||||||||||||||| ||||| || || ||||| ||
Sbjct 1112 GAGACGAATTGCTCGAGAAGAGTTTGTTTCTTTGCCCACAAACCCGAGGAGCTGCGTCCT 1171
Query 1132 TTGTACCCTTCAACTGGATCAGGTGTTCCTTCCCCGCGGTCTTCCTTCTCATCTTGCAAT 1191
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1172 TTGTACCCTTCAACTGGATCAGGTGTTCCGTCCCCGCGGTCTTCCTTCTCATCTTGCAAT 1231
Query 1192 TCCTCG-CCTGCTTTCGACATGGGACCGATTAGCCCACTTCCTATCGGAGCATCAACCAC 1250
|||||| || ||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 1232 TCCTCGACC-GCTTTCGACATGGGACCGATTAGTCCGCTTCCTATCGGAGCAACAACCAC 1290
Query 1251 ACCTCCTTTGAGTCCTAACGGCGTATCCTCTCCAATGGGTGGCGGAAAAACGTGGATGAA 1310
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1291 ACCTCCTTTGAGTCCTAACGGTGTATCCTCTCCAATAGGTGGAGGAAAAACGTGGATGAA 1350
Query 1311 CTGGCCTAACATAACCCCTCCTGCATTGCAGCTTCCAGGGAGCAGATTGAAATCTGCATT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CTGGCCTAACATAACCCCTCCTGCATTGCAGCTTCCAGGGAGCAGATTGAAATCTGCATT 1410
Query 1371 GAATGCAAGAGAAATCGATTTCTCTGAAGAGATGCAAAGTCTTACTTCTCCAACTACATG 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 GAATGCAAGAGAAATCGATTTCTCTGAAGAGATGCAAAGTCTTACTTCTCCAACTACATG 1470
Query 1431 GAACAACACGCCCATGTCAGCTGCGTCATCTCCATTCTCCGGAAAGGGCATGAACAGGCT 1490
|||||||||||| | | || |||||||||||||||||||||||||||||||||||
Sbjct 1471 GAACAACACGCC-A----A--TG--TCATCTCCATTCTCCGGAAAGGGCATGAACAGGCT 1521
Query 1491 TGCGGGAGGAGCAATGAGCCCGGTGAATAGCCTCAGTGATATGTTTGGGACAGAGGATAA 1550
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1522 TGCAGGAGGAGCAATGAGCCCGGTGAATAGTCTCAGTGATATGTTTGGGACAGAGGATAA 1581
Query 1551 TACATCGGGTTTGCAGATCCGACGCAGCGTCATTAACCCGCAGCTGCATTCCAACAGTCT 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 TACATCGGGTTTGCAGATCCGACGCAGCGTCATTAACCCGCAGCTGCATTCCAACAGTCT 1641
Query 1611 CTCTTCATCACCTGTGGGAGCCAATTCTCTGTTTTCGATGGATTCATCCACAGTCTTGGC 1670
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1642 TTCTTCATCACCTGTGGGAGCCAATTCTCTGTTTTCGATGGATTCCTCCGCAGTCTTGGC 1701
Query 1671 TTCAAGAGCGGCTGAATTTGCTAAACAGCGAAGCCAAAGCTTCATAGAACGCAGCAATGG 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1702 TTCAAGAGCGGCTGAATTTGCTAAACAGCGAAGCCAAAGCTTCATAGAACGCAACAACGG 1761
Query 1731 ATTGAATCACCATCCTGCAATCTCCTCCATGACTACAACTTGTCTAAACGATTGGGGCTC 1790
| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1762 ACTGAATCACCATCCCGCAATCTCTTCCATGACTACAACTTGTTTAAACGATTGGGGCTC 1821
Query 1791 ATTGGACGGAAAACTTGACTGGAGCGTCCAAGGAGACGAGCTACAGAAGCTCAGAAAATC 1850
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 ATTGGATGGGAAGCTTGACTGGAGCGTCCAAGGAGACGAGCTACAGAAGCTCAGAAAATC 1881
Query 1851 CACTTCTTTCCGTCTTAGAGCCGGTGGCATGGAATCAAGACTGACC-AACGAAGGGACCG 1909
||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1882 CACTTCTTTCCGTCTCAGAGCCGGTGGCATGGAATCAAGACTG-CCTAACGAAGGGACTG 1940
Query 1910 GGCTCGAAGAGCCAGATGTCTCTTGGGTGGAGCCGTTGGTGAAAGAGCCACAGGAGACAA 1969
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1941 GGCTCGAAGAGCCAGATGTCTCATGGGTGGAGCCGCTGGTGAAAGAGCCACAGGAGACAA 2000
Query 1970 GACTAGCTCCGGTTTGGATGGAGCAATCATACATGGAGACAGAACAGACCGTGGCTTGA 2028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 GACTAGCTCCGGTTTGGATGGAGCAATCATACATGGAGACAGAACAGACCGTGGCTTGA 2059
Score = 139 bits (75), Expect = 1e-31
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 2028 ATTTACACTTGTGAAGTTAGTGAAAGTGTTGTAATTGTTTCTTCTAAGAGTTGATCTAAG 2087
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2416 ATTTACACTTGTGAAGTTAGGGAAAGTGTTGTAATTGTTTCTTCTAAGAGTTGATCTAAG 2475
Query 2088 ATGTTTAAGACTATATCGTCGCTT 2111
|||||| |||||||||| ||||||
Sbjct 2476 ATGTTTGAGACTATATCTTCGCTT 2499
Score = 95.3 bits (51), Expect = 2e-18
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1 ATTTTGACCTTAAGAAGAAAGTGACAAGGAGAGGAAGAAGAAGaaaaaaaa 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTTGACCTTAAGAAGAAAGTGACAAGGAGAGGAAGAAGAAGAAAAAAAA 51
> AT5G58630.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:23696108-23697452
REVERSE LENGTH=1269
Length=1269
Score = 139 bits (75), Expect = 1e-31
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 2028 ATTTACACTTGTGAAGTTAGTGAAAGTGTTGTAATTGTTTCTTCTAAGAGTTGATCTAAG 2087
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1238 ATTTACACTTGTGAAGTTAGGGAAAGTGTTGTAATTGTTTCTTCTAAGAGTTGATCTAAG 1179
Query 2088 ATGTTTAAGACTATATCGTCGCTT 2111
|||||| |||||||||| ||||||
Sbjct 1178 ATGTTTGAGACTATATCTTCGCTT 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104668136325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5