BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495986
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58640.1 | Symbols: | Selenoprotein, Rdx type | chr5:236978... 1358 0.0
> AT5G58640.1 | Symbols: | Selenoprotein, Rdx type | chr5:23697841-23699767
FORWARD LENGTH=1104
Length=1104
Score = 1358 bits (735), Expect = 0.0
Identities = 841/891 (94%), Gaps = 12/891 (1%)
Strand=Plus/Plus
Query 1 ACTCTCTCCTTCCTTCTTCTCCGATTCGCTTTACAC-A--ACTTCCGTCGTC-CTCTCTC 56
|||||||| |||| |||||||||||||||||||||| | ||||| ||||| |||||||
Sbjct 53 ACTCTCTCGTTCCGTCTTCTCCGATTCGCTTTACACTACTTCTTCCCTCGTCTCTCTCTC 112
Query 57 T--CGCTTGACTGTGAATTAATCG-GAGATCAAAATATCCGCCATGGACAGAGCACAATT 113
| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 113 TCGCGCTTCACTGTGAATTAATCGAGAGATCTAAATATCCGCCATGGACAGAGCACAATT 172
Query 114 GATCTTGTTAGGTCTACCTATATTCTTATTCTGTTCGGATCTCTTCAACCTTTTCACTCC 173
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 173 GATCTTGTTAGGTCTACCTATATTCTTGTTTTGTTCGGATCTCTTCAACCTCTTCACTCC 232
Query 174 TCCGCCTCCGAAACCTCAGCCTCACCGTCCTCATCAGCCACCGCATATCCCTCACCAGCA 233
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 233 TCCGCCTCCTAAACCTCAGCCTCACCGTCCTCATCAGCCACCGCATATTCCTCACCAGCA 292
Query 234 TCGTCCTGCTTCGATCATCCCTGAAACCCTAGATTTTCCTTCACAGAAGACAAATGGCTT 293
||||||| | |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 293 TCGTCCTAATGCGATCATCCCCGAAACCCTAGACTTTCCTTCACAGAAGACAAGTGGCTT 352
Query 294 ---AGGAGCAATTGGATATGGAAGTACAGTAGAGATCAACTTCTGCGTCTCCTGTTCTTA 350
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 353 AGGAGGAGCAATTGGATATGGAAATACAGTAGAGATCAACTTCTGCGTCTCCTGTTCTTA 412
Query 351 CAAGGGAACTGCAGTCACCATGAAGAAGATGTTAGAGACAGCTTTTCCCGGTTTAGATGT 410
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 413 CAAGGGAACTGCAGTCACCATGAAGAAGATGTTAGAGACGGCTTTTCCCGGTTTAGATGT 472
Query 411 GATTCTCGCAAATTACCCACCTCCAGCACCAAAACGCCTTCTAGCTAAGGTTGTGCCTGT 470
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 473 GATTCTCGCAAATTACCCACCACCAGCACCAAAACGCCTTCTAGCTAAGGTTGTGCCGGT 532
Query 471 TGCTCAGATGGGAGTTATTGGTATGATAGTTGCAGGTGATCGTATCCTTCCCATGATTGG 530
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGTTCAGATGGGAGTTATTGGTATGATAGTTGCAGGTGATCGTATCCTTCCCATGATTGG 592
Query 531 AATAACGAACCCACCTGCTTGGTTCCACTCCTTGAGGGCCAACAGATTTGGATCCATGGC 590
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATTACGAACCCACCTGCTTGGTTCCACTCCTTGAGGGCCAACAGATTTGGATCCATGGC 652
Query 591 TTCCACTTGGCTTATCGGAAACTTTCTGCAGTCTTACCTGCAAAGCTCAGGCGCCTTTGA 650
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 653 TTCCACTTGGCTTATCGGAAACTTTCTGCAGTCTTACCTTCAAAGCTCAGGCGCCTTTGA 712
Query 651 AGTTTACTGCAATGGCGAACTGGTGTTCTCTAAATTGAAAGAAGGTAGATTCCCAGGAGA 710
|||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGTTCACTGCAACGGCGAACCGGTGTTCTCTAAATTGAAAGAAGGTAGATTCCCAGGAGA 772
Query 711 GATCGAGCTGAGAGATCTCATCAGCAAAACTGTAACAAGACCGAGCATACTCGCAGGTAG 770
|||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| ||
Sbjct 773 GATCGAGCTGAGAGATCTCATCAGTAAAACTCTAACACGACCGAGCATACTCACAGGCAG 832
Query 771 CAGCTACGGAAGTAGTAGTATCAGAAGATAGAAAAGCTGGAACCTTTCCGTGAAGTTCCC 830
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 833 CAGCTACTGAAGTAGTAGTATCAGAAGATAGAAACGCTGGAACCTTTCCGTGAAGTTCTC 892
Query 831 -CAAGTATTTT-AACAAGAGATGGTGTTACAATCTCATGTGCCAAAAGTGT 879
|||||||||| || | ||||||||| ||||||||||||||||||||||||
Sbjct 893 ACAAGTATTTTTAATACGAGATGGTGGTACAATCTCATGTGCCAAAAGTGT 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43000429832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5