BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495988
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58660.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1661 0.0
> AT5G58660.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:23701467-23703988
FORWARD LENGTH=1287
Length=1287
Score = 1661 bits (899), Expect = 0.0
Identities = 1128/1237 (91%), Gaps = 21/1237 (2%)
Strand=Plus/Plus
Query 1 AGATGAGCATCAGTGAGTCATATCCACCGGCTTTCCGGCGTGTAATCAACGACGGAGATC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 41 AGATGAGCATCAGTGAGTCATATCCACCGGCTTTCCGGCGTGTAACCAACGACGAAAATC 100
Query 61 GTCTAGCAACACCGGTTCTTGTCCAGGGCAAGGATATCAATATCCCGGTTATCGATATGG 120
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 101 CTCCAGCAACACCGGTTATTGTCCAGGGCAAGGATATCAATATCCCGGTTATCGATTTGG 160
Query 121 AACGTTTGGATAAGGAGATACTGAGAGAGGCATGCAAGGAGTGGGGAATATTCCGTCTAG 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AACGTTTGGACAAGGAGATACTGAGAGAGGCATGCAAGGAGTGGGGAATATTCCGTCTAG 220
Query 181 AGAATCACGGAGTACCGTTGGCGTTAACGTCACGACTTCAAGAAATCTCGGAGTCGTTAC 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 221 AGAATCACGGAGTACCGTTGGCGTTAACGTCACGGCTTCAAGAAATCTCGGAGTCATTAC 280
Query 241 TGAGTCTTCCTTTTGAGAACAAACGAGACTTGTTCGCCGCCGTTAACTCTCCGTTATCGT 300
|||||||||| |||||||| ||||| || |||||||| |||||||| |||||||||||||
Sbjct 281 TGAGTCTTCCGTTTGAGAAAAAACGGGAATTGTTCGCTGCCGTTAAATCTCCGTTATCGT 340
Query 301 ACTTTTGGGGAACGCCAGCTCTAAATCGTTCGGGAGATGCACTGAAGAGAGGAGCTCAAG 360
| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 341 ATTTTTGGGGAACACCAGCTCTAAATCGTTCAGGAGATGCACTAAAGAGAGGAGCTCAAG 400
Query 361 CTTCAAACGTAACCATGCTCGAAGGTTTCAACGTTCCTCTCTCGTCTCTCTCAA---T-- 415
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 CTTCGAACTTAACCATGCTCGAAGGTTTCAACGTTCCTCTCTCGTCTCTCTCGTCGCTCT 460
Query 416 -G---CTTCCAACTTCTACTTCTTGTGATGATGATGCTCAAGA-G--CCTAAACTTGAGT 468
| |||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 461 CGAAGCTTCCAACTTCTACTTGTTGTGATGATGATGCTCAAGAAGAGCCTAAACTTGAGT 520
Query 469 CTTTCAGAGTGTTGATGGAGGAATATGGAAGGCACATAACTAGAATTGGTGTGTCCTTGT 528
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 521 CTTTCAGAGTGTTGATGGAGGAATATGGAAAGCACATAACTAGAATTGCTGTGTCATTGT 580
Query 529 TCGAAGCTATAGCACAAACACTAAACCTAGAACTATCGGGTAACCGGAGATCAGAATTCT 588
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 581 TCGAAGCTATAGCACAAACACTGAACCTAGAACTATCCGGTAACCGGAGATCAGAATACT 640
Query 589 TATCGGAATCGACAGGGCTCATACGGGTTTACCGGTATCCACGAAGCTCCGACCAAGAAG 648
||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||| ||
Sbjct 641 TATCGGAATCGACAGGGCTAATAAGGGTTTACCGGTATCCACAAAGCTCCGAGGAAGCAG 700
Query 649 CTGGAGAAGCTTTAGGAATGGAAGTCCACACAGACAGTTCTGTTATCTCAATATTAAAAG 708
| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 701 CCAGAGAAGCTCTAGGAATGGAAGTTCACACAGACAGTTCGGTTATCTCAATATTAAGAG 760
Query 709 AAGACGAAAGCGGTGGGCTTGAGATAATGAAAGGTGAAGAATGGTTCTGTGTAAAGCCTG 768
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 761 AAGATGAAAGTGGTGGGCTTGAGATCATGAAAGGTGAAGAATGGTTCTGTGTAAAGCCTG 820
Query 769 TTGCTAATACTCTCATTGTTAATCTTGGAGATATGATGCAGGTGATAAGCGATGATGAGT 828
||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||
Sbjct 821 TTGCTAATACTCTTATCGTCAATCTTGGAGATATGATGCAGGCCATAAGCGATGATGAGT 880
Query 829 ACAAGAGTGTGACACATAGAGTGAAGAAGAAGAATAGGAAGACAGAGAGACACTCAGTGT 888
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 881 ACAAGAGTGTGACACATAGAGTGAAGAAGAGGAATAGGAAGACAGAGAGACACTCAGTGT 940
Query 889 GTTATTTTGTGTTCCCAAAGAGAGATTGTGTGATAAAGTCATCAAACTATAAGCCATTCA 948
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 941 GTTATTTTGTGTTTCCAAAGAGAGATTGCGTGATAAAGTCATCAAACTATAAGCTATTCA 1000
Query 949 CTTACTCAGAGTTTGAAGCTCAAGTTCAGGCTGATGTTCAGTCTCTTGGAACCAAGATTG 1008
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1001 CTTACTCAGATTTTGAAGCTCAAGTTCAAGCTGATGTTCAGTCTCTTGGAACCAAGATTG 1060
Query 1009 GCCTTCCTAGATTCAACCCAAATTCTCCATTGTTTCTCTGATCGTCTCTAAAAATTTAGT 1068
||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||
Sbjct 1061 GCCTTCCTAGATTCAACCCAAATTCTCCATTGTTTCTCTGACCGTGTCTGAAA-TTTAGT 1119
Query 1069 ATCTATT-GGTTTAACAAACTCTGGATACTAAAGTCAG-Caaa-aa-aaGGCCGCATATT 1124
||||||| |||||| ||||||||||||||| |||| || | | || ||| | || |
Sbjct 1120 ATCTATTTGGTTTACCAAACTCTGGATACTTAAGTTAGTCCATCAATAAGACT-CAAACA 1178
Query 1125 TTATTTTATTTTTGTTGTCGAGTCTCAAATAATTTTGGACTGGCCCTGAAAATTGTAGAG 1184
| | | |||| | || ||| |||||||||||| |||||||||| || ||||||
Sbjct 1179 A-AGAA-AGCTGTGTTTTTGACTCTGAAATAATTTTGGGCTGGCCCTGATCATCGTAGAG 1236
Query 1185 AACTTGATAATAAATATTGTTTGTTGAATATTAAAAA 1221
||||||| ||||| ||||||||||||| ||||||||
Sbjct 1237 AACTTGACAATAAC-ATTGTTTGTTGAACATTAAAAA 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5