BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495993
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58700.1 | Symbols: ATPLC4, PLC4 | phosphatidylinositol-spec... 3125 0.0
AT3G47290.1 | Symbols: ATPLC8, PLC8 | phosphatidylinositol-spec... 102 1e-20
> AT5G58700.1 | Symbols: ATPLC4, PLC4 | phosphatidylinositol-speciwc
phospholipase C4 | chr5:23713000-23716098 REVERSE LENGTH=1979
Length=1979
Score = 3125 bits (1692), Expect = 0.0
Identities = 1884/1976 (95%), Gaps = 15/1976 (1%)
Strand=Plus/Plus
Query 1 AACAAGACGACGATACATACACATATACATACATATGGAGGGAAAAAGAGAGATGGGTAG 60
|||||||||||||||||||||| | | || ||||| ||||||| ||||||||||||
Sbjct 16 AACAAGACGACGATACATACAC----A-A-AC--ATGGAAGGAAAAAAAGAGATGGGTAG 67
Query 61 TTACAAATTCTGTCTGATCTTCACGAGGAAGTTCAGGATGACGGAGTCTGGTCCTGTCGA 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 68 TTACAAATTCTGTCTGATCTTCACAAGGAAGTTCAGGATGACGGAGTCTGGTCCTGTCGA 127
Query 121 TGACGTCAGAGAGATTTTCGAGAAATACGCCGACGGTGAAGCTCACATGTCGCCGGAGCA 180
||||||||||| |||||||||||||| |||| || || ||||| ||||||||||||||
Sbjct 128 AGACGTCAGAGATCTTTTCGAGAAATACACCGAAGGCGATGCTCATATGTCGCCGGAGCA 187
Query 181 GCTACAGAAGCTCATGGCggaggaaggaggaggaggaggagAAACAAGTCTGGAGGAAGC 240
|||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||
Sbjct 188 GCTACAGAAGCTCATGACGGAGGAAGGAGGA-GA--AGGAGAAACAAGTCTAGAGGAAGC 244
Query 241 GGAGAGAATCGTTGACGAGGTGCTTCGCCGGAGACATCACATTGCAAAGTTCACCAGAAG 300
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 245 AGAGAGAATCGTTGACGAGGTTCTTCGCCGGAAACATCACATTGCAAAGTTCACCAGACG 304
Query 301 AAACCTTACTCTTGATGATTTCAATTATTACCTGTTTTCTACTGATCTTAATCCTCCAAT 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 305 AAACCTTACTCTTGATGATTTCAATTATTACCTCTTTTCTACTGATCTTAATCCTCCTAT 364
Query 361 CGGCGATCAGGTCCATCAAAACATGGATGCTCCACTGTCACATTACTTTATATACACAGG 420
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 365 CGCCGATCAGGTCCATCAAAACATGGATGCTCCATTGTCACATTACTTTATATTCACAGG 424
Query 421 CCATAATTCGTACTTAACTGGAAATCAGCTCAGTAGCAACTGCAGTGAACTTCCTATTGC 480
||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 425 CCACAATTCCTATTTAACTGGAAATCAGCTAAGTAGCAACTGCAGTGAACTTCCTATTGC 484
Query 481 AGATGCATTGAGACGAGGCGTGAGAGTGGTTGAGTTGGATCTTTGGCCTCGTGGTACCGA 540
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 485 AGATGCATTGAGACGAGGCGTGAGAGTTGTTGAGTTGGATCTTTGGCCACGTGGTACCGA 544
Query 541 TGATGTCTGTGTTAAACATGGAAGGACCTTGACAAAAGAAGTGAAATTGGGGAAATGTTT 600
||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct 545 TGATGTCTGCGTTAAACATGGAAGGACATTGACAAAGGAAGTGAAGTTGGGAAAATGTTT 604
Query 601 GGAATCCATTAAAGCTAATGCCTTTGCTACTTCAAAGTATCCTGTTATTATTACTCTTGA 660
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 605 GGAATCTATTAAAGCTAATGCCTTTGCTATTTCAAAGTATCCTGTTATTATTACTCTTGA 664
Query 661 AGACCATCTCACGCCAAAACTTCAGTTTAAAGTTGCCAAGATGATAACTCAGACATTTGG 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 665 AGACCATCTCACGCCAAAACTTCAGTTTAAAGTTGCTAAGATGATAACTCAGACATTTGG 724
Query 721 AGATATGTTGTATTACCATGATTCTGAAAGTTGTCAAGAATTTCCTTCACCTGAAGAGTT 780
||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 725 AGATATGTTGTATTACCATGATTCTCAAGGTTGTCAAGAATTTCCTTCACCGGAAGAGTT 784
Query 781 GAAGGAAAAGATTCTAATTTCAACAAAACCTCCAAAAGAGTACTTAGAAGCTAACGATGC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 785 GAAGGAAAAGATTCTAATTTCAACAAAACCTCCAAAAGAGTACTTAGAAGCTAACGATAC 844
Query 841 GAAGGAGAAAGATAGTGGAGAGAAAGGGAAGGATTCGGATGAGGATGTATGGGGAAAAGA 900
||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 845 TAAGGAGAAAGATAATGGAGAAAAAGGTAAGGATTCGGATGAGGATGTATGGGGCAAAGA 904
Query 901 GCCAGAAGACCTTATTTCTACGCAGTCTGATCTTGAGAAGGTCACAAGCAGTGTAAATGA 960
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 905 GCCAGAAGACCTTATTTCTACGCAATCTGATCTTGACAAGGTGACAAGCAGTGTAAATGA 964
Query 961 TCTCAGTCAAGATGAGGAAGAAAGAGGGTCTTGTGAGTCTGACACGTCATGCCAATTACA 1020
||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 965 TCTCAATCAAGATGATGAAGAAAGGGGGTCTTGTGAGTCTGATACGTCATGCCAATTACA 1024
Query 1021 AGCACCAGAATACAAGCGTCTTATTGCTATCCATGCTGGGAAGCCAAAAGGCGGTTTACG 1080
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1025 AGCACCAGAATACAAGCGTCTTATCGCTATCCATGCCGGGAAGCCAAAAGGCGGTTTACG 1084
Query 1081 GATGGCTTTAAAGGTTGATCCAAATAAAATCAGGCGACTTAGTCTGAGTGAGCAATTACT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GATGGCTTTAAAGGTTGATCCAAATAAAATCAGGCGACTTAGTCTGAGTGAGCAATTACT 1144
Query 1141 TGAGAAAGCTGTAGCATCATATGGTGCAGATGTTATCAGATTCACTCAGAAGAATTTTCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TGAGAAAGCTGTAGCATCATATGGTGCAGATGTTATCAGATTCACTCAGAAGAATTTTCT 1204
Query 1201 GAGGATATATCCCAAAGGCACAAGGTTTAACTCTTCAAACTATAAACCTCAGATCGGTTG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 GAGGATATATCCCAAAGGCACAAGGTTTAACTCTTCAAACTATAAACCTCAGATCGGTTG 1264
Query 1261 GATGAGCGGAGCTCAAATGATTGCATTCAACATGCAGGGGTATGGCAGAGCTTTGTGGCT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1265 GATGAGCGGAGCTCAAATGATTGCATTCAACATGCAGGGGTATGGCAGAGCATTGTGGCT 1324
Query 1321 GATGGAAGGAATGTTTCGAGCAAATGGAGGGTGCGGTTATGTCAAGAAGCCAGATTTTCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GATGGAAGGAATGTTTCGAGCAAATGGAGGGTGCGGTTATGTCAAGAAGCCAGATTTTCT 1384
Query 1381 TATGGATGCAGGTTCTAATGGACAAGGTTTTTATCCCAAAGATAATTCGTGTCCAAAGAA 1440
|||||||||| || |||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1385 TATGGATGCAAGTCCTAATGGACAAGATTTTTACCCCAAAGATAATTCGTCTCCAAAGAA 1444
Query 1441 AACTTTAAAGGTGAAAGTCCT-TATGGGAGATGGATGGCTCCTAGACTTCaaaaaaaCTC 1499
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1445 AACTTTAAAGGTGAAAGTC-TGTATGGGAGATGGATGGCTCCTAGACTTCAAAAAAACTC 1503
Query 1500 ACTTTGATTCTTATTCTCCTCCAGATTTCTTCGTTAGAGTGGGTATTGCCGGAGCACCTG 1559
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1504 ACTTTGATTCTTATTCTCCTCCAGATTTCTTCGTTAGAGTGGGTATTGCTGGAGCACCTG 1563
Query 1560 TTGATGAGGTGATGGAGAAAACAAAAATAGAGTATGATACATGGACACCCATTTGGAATA 1619
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1564 TTGATGAGGTGATGGAGAAAACAAAAATAGAGTATGATACATGGACACCTATTTGGAATA 1623
Query 1620 AGGAGTTCATATTCCCGTTAGCAGTTCCTGAACTTGCTCTGCTCCGTGTTGAAGTCCATG 1679
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1624 AGGAGTTCACATTCCCTTTAGCAGTTCCTGAACTTGCTCTGCTCCGTGTTGAAGTTCATG 1683
Query 1680 AGCATGACATAAATGAAAAAGATGATTTTGGAGGTCAAACTTGTTTACCAGTGTCCGAGA 1739
|||| ||| | ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1684 AGCACGACGTGAATGAAAAAGATGATTTTGGAGGTCAAACTTGTTTACCAGTTTCAGAGA 1743
Query 1740 TAAGGCAAGGCATACGCGCTGTTCCACTCTTTAATCGCAAGGGAGTGAAATACAGCTCCA 1799
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TAAGACAAGGCATACGCGCTGTTCCACTCTTTAATCGCAAGGGAGTGAAATACAGCTCCA 1803
Query 1800 CACGGCTTCTTATGCGCTTCGAGTTTGTCTGAGATGCCATTTTTGGTGCGTGTATCCATC 1859
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1804 CACGGCTTCTTATGCGCTTCGAGTTTGTCTGAGACGCCATTTTTGGTGCGTGTATCCATC 1863
Query 1860 TAGATTTATATCTTCTTACTTTATTCGGTATGTTGTGTGTTTATGTGTCTTATGCTTCTT 1919
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1864 TAGATTTATATCTTCTTACTTTATTCGATATGCTGTGT-TTTATGTGTCTTATGCTTCTT 1922
Query 1920 CATTGAGGAATAAAATTTGATCTTTTACATGATAAATATATAGATCTTCCGAAATT 1975
|||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 1923 CATTGATGAATAAAATTTGATCTTT-ACATGAGAAATATATAGATCTTCTGAAATT 1977
> AT3G47290.1 | Symbols: ATPLC8, PLC8 | phosphatidylinositol-speciwc
phospholipase C8 | chr3:17420510-17423588 FORWARD LENGTH=1951
Length=1951
Score = 102 bits (55), Expect = 1e-20
Identities = 133/169 (79%), Gaps = 12/169 (7%)
Strand=Plus/Plus
Query 1240 CTATAAACCTC--AGATCGGTTGGATG-AGCGGAGCTCAAATGATTGCATTCAA-CATGC 1295
||||||||| | ||| | | |||||| | ||| |||||| |||||||| | || || |
Sbjct 1107 CTATAAACCCCAAAGAGC-G-TGGATGCA-CGGTGCTCAATTGATTGCACT-AAGCAGGA 1162
Query 1296 AGG-GG-TATGGCAGAGCTTTGTGGCTGATGGAAGGAATGTTTCGAGCAAATGGAGGGTG 1353
||| || | | | | | || ||| ||||| |||| |||||| ||||||||||||||||
Sbjct 1163 AGGAGGAGAAAGAAAAAC-TT-TGGTTGATGCAAGGGATGTTTAGAGCAAATGGAGGGTG 1220
Query 1354 CGGTTATGTCAAGAAGCCAGATTTTCTTATGGATGCAGGTTCTAATGGA 1402
|||||||||||||||||| ||||| ||| || |||| ||| ||| ||||
Sbjct 1221 CGGTTATGTCAAGAAGCCGGATTTCCTTTTGAATGCTGGTCCTAGTGGA 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97840862205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5