BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495994
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58710.1 | Symbols: ROC7 | rotamase CYP 7 | chr5:23717775-23... 1066 0.0
> AT5G58710.1 | Symbols: ROC7 | rotamase CYP 7 | chr5:23717775-23719765
FORWARD LENGTH=950
Length=950
Score = 1066 bits (577), Expect = 0.0
Identities = 670/715 (94%), Gaps = 6/715 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaGGGACTGTAGAGAAGAAAC---A--ACGGTGCGAGGAGATGGCGAGCTCAG 55
||||||||||||||||| ||||| | || | ||||||||| |||||||||||||||
Sbjct 20 AAAAAAAAAGGGACTGTGGAGAA-ACACTTTAGCACGGTGCGACAAGATGGCGAGCTCAG 78
Query 56 TGACGCTGCTTCTATGGAGTCTTCTTCTTCTCGGAACCCTAAGCGCTATTCAGGCCAAAA 115
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 79 TGACGCTGCTTCTATGGAGTCTTCTTCTTCTCGGTACACTAAGCGCTATTCAGGCCAAAA 138
Query 116 AGTCTAAAGAAAACGTGAAGGAGATCACACACAAGGTTTATTTCGATGTCGAAATTGATG 175
||||||| |||||| | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 139 AGTCTAAGGAAAACTTAAAGGAGATCACACACAAGGTTTATTTTGATGTTGAAATTGATG 198
Query 176 GGAAAGCAGCCGGTCGTATTGTCATGGGTCTATTTGGCAAGACAGTCCCCAAAACTGTCG 235
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 199 GGAAAGCAGCTGGTCGTATTGTCATGGGTCTATTTGGCAAGACAGTCCCCAAAACTGTAG 258
Query 236 AGAATTTCCGAGCTCTATGCACAGGGGAGAAAGGGATAGGTAAGAAAGGGAAGGCTCTCC 295
|||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||
Sbjct 259 AGAATTTCCGAGCTTTATGCACTGGGGAGAAAGGAATAGGTAAGAATGGGAAGGCGCTCC 318
Query 296 ATTACAAGGGGAGTTCATTCCACAGGATCATACCAAGCTTTATGCTTCAAGGAGGCGATT 355
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 319 ATTACAAGGGGAGTTCATTTCATAGGATCATACCAAGCTTTATGCTCCAAGGAGGCGATT 378
Query 356 TTACACATGGAAATGGAATGGGAGGAGAATCTATCTATGGTGAGACGTTTGCTGATGAGA 415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 379 TTACACATGGAAATGGAATGGGAGGAGAATCTATCTATGGTGAGAAGTTTGCTGATGAGA 438
Query 416 ACTTCAAACTCAAGCATACTGGTCCTGGGTTCCTATCAATGGCAAACGCCGGTCAAGACA 475
||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
Sbjct 439 ACTTCAAACTCAAGCATACTGGTCCAGGGTTCTTATCAATGGCAAATGCCGGTCAAGATA 498
Query 476 CCAACGGATCACAGTTTTTCATCACAACTGTAACAACCAGCTGGTTGGATGGGCGGCATG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 499 CCAACGGATCACAGTTTTTCATCACAACTGTAACAACCAGCTGGTTGGATGGGCGACATG 558
Query 536 TGGTATTCGGGAAGGTAGTGACGGGAATGGACGTGGTGTACAAAATCGAAGCTGAAGGAA 595
|||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 559 TGGTATTCGGGAAGGTAGTGACAGGAATGGATGTGGTGTACAAAGTCGAAGCTGAAGGAA 618
Query 596 ATCAGAGTGGAACTCCTAAGAGTAAAGTAGTGATCGTGGACAGTGGTGAACTTCCTCTGT 655
|||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||
Sbjct 619 ATCAGAGTGGAACTCCTAAGAGTAAAGTGGTGATTGTAGACAGTGGTGAGCTTCCCCTGT 678
Query 656 AACTCAGCAACTCAAGTTTTCTCCAACTGATCCTCCATTGATGTGAGCTCTAGTG 710
|||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 679 AACTCAACAACTCTAGTTTTCTCCATCTGATCATCCATTGATGTGAGCTCTAGTG 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5