BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495998
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58730.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1945 0.0
> AT5G58730.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr5:23723404-23725465 REVERSE LENGTH=1426
Length=1426
Score = 1945 bits (1053), Expect = 0.0
Identities = 1254/1347 (93%), Gaps = 30/1347 (2%)
Strand=Plus/Plus
Query 1 ACGTTACGTATTAGCTTATAGCCATTATTAGTTTTGTCTCTTCTAC-TAGT-TCGTTGGT 58
||||||||||||||||||||||| |||||||||||||||||| | | | ||||||||
Sbjct 1 ACGTTACGTATTAGCTTATAGCC---ATTAGTTTTGTCTCTTCTTCTTCTTCTCGTTGGT 57
Query 59 CGTCTTCTTCGTCTTAGTAATTCCATGA---TTCTTCTTCCTTCTGCTTCACCTTCCCGA 115
|| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 58 CGGCTTCTTCGTCTTACTAATTCCATGATTCTTCTTCTTCCTTCTGCTTCACTTTCTCGA 117
Query 116 TGACCCTCTGCACAAGCCGCGATCATGACGCTAAATCCTCCTCCGTCGCAGCAAACGCCT 175
||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 118 TGATCCTCTGCACCAGCCGCGATCATGACGTTGAATCCTCCTCCGTCGCAGCAAACGTCT 177
Query 176 CAGTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGGAATTACTGCCACGAC 235
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 178 CACTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGAAATTATTGCCACGAC 237
Query 236 GTTCTGATCCAAAACGGATCCGTCGTAGCTGAAACACTCGGCGGCGCCGCCTCTTTCATC 295
||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 GTTTTAATCCAAAACGGATCCGTCGTAGCTGAAACTCTCGGCGGCGCCGCCTCTTTCATA 297
Query 296 TCTAATGTCCTAGATTCTTCCTCTGTATCCTGCGAATTGGTCTCCAAAGTCGGACACGAC 355
||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 298 TCTAATGTCTTAGATTCTTCCTCTGTCTCCTGCGATTTGGTCTCCAAAGTAGGACACGAC 357
Query 356 TTCAGATACGAGGTTATCCACTCTCCGATCGTGGCTCCGGACAAAGAAACCACAATTTTC 415
|||||||||||||| | |||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 358 TTCAGATACGAGGTCACCCACTCTCCGATCGTGGCTCCGGAGAAGGAAACAACAGTTTTC 417
Query 416 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCACGCTGATCGGGTGTTGAAACGG 475
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 418 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCATGCTGATCGGGTGTTGAAAAGA 477
Query 476 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAG-TTTCGATTTCGG 534
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 478 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAGATTT-GATTTCGG 536
Query 535 GATGGCTGTTGGAGTCGGTGGCGAGATTTTACCGGAGACGCTTGAGAAAATGGTGGAGAT 594
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AATGGCCGTTGGAGTCGGCGGCGAGATTTTACCGGAGACGCTTGAGAAAATGGTGGAGAT 596
Query 595 CTGCGACGTTGTTGCTGTGGATATTCAAGCTCTGATTAGGGTTTTTGATCCCGTTGATGG 654
||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 597 CTGTGACGTTGTTGCTGTGGATATTCAAGCTTTGATTAGGGTTTTTGATCCTGTTGACGG 656
Query 655 AGCTGTGAAGCTTGTTGATTTGAAAGAAAGTGGATTTTTTCACATCTTGCATCGAATTGG 714
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 AGCTGTGAAGCTTGTTGATTTGAAAGAAAGTGGATTTTATCACATCTTGCATCGAATTGG 716
Query 715 ATTCTTGAAAGCTTCATCAGACGAAGCTCTTTTCATGGATGTTGAACAAATGAAGCAATT 774
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 ATTCTTGAAAGCTTCGTCAGACGAAGCTCTTTTCATGGATGTTGAACAAATGAAGCACTT 776
Query 775 GTGTTGTGTGGTGGTGACTAATGGTGAAAAAGGGTGTAGGATTTATCATAAGGATGATGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTGTTGTGTGGTGGTGACTAATGGTGAAAAAGGGTGTAGGATTTATCATAAGGATGATGA 836
Query 835 AGCGACGGTTACTCCGTTCTTGGCGAAGCAGGTGGATCCTACCGGCGCCGGAGATAGCTT 894
| ||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 837 AATGACGGTTCCTCCGTTCTTGGCGAAGCAGGTGGATCCTACCGGTGCCGGAGACAGCTT 896
Query 895 TCTCGGAGGTTTGGTTGTTGGGCTTGTAGAAGGTTTGACTGTTCCTGATGCTGCATTGTT 954
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 TCTCGGAGGTTTGATTGTTGGGCTTGTTGAAGGTTTGACTGTTCCTGATGCTGCATTGTT 956
Query 955 AGGGAACCTCTTTGGTTCCATCACTGTAGAGCATATTGGTCAGCCAAAATTCGATTTGAT 1014
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 AGGGAACCTCTTTGGTTCCATCACTGTAGAGCATATTGGTCAGCCAAAGTTCGATTTGAT 1016
Query 1015 GATGCTTCAGAGAGTCCAGGATGAGGTACAGAAAAGGAAGAAGCAATGTAACCTCTCTAG 1074
||||||||||| |||| ||||||||||||||| |||||||||||| |||||| | |||||
Sbjct 1017 GATGCTTCAGAAAGTCAAGGATGAGGTACAGAGAAGGAAGAAGCAGTGTAACATATCTAG 1076
Query 1075 CAGCCATAAAAATGATCACAATGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATG 1134
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAGCCATAACAACGATCACAACGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATG 1136
Query 1135 CGTAGACTCTCAACTTCAACCAAAGTTATTGGTCAATGGTCACTCCTGTGACAGGTGAAT 1194
||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct 1137 CGTAGACTCTCAACTTCAACCAAAGTTATTGGTCAATGGTCACTC-T-TG-----TGA-T 1188
Query 1195 GATCGGTCCCGGTGAATACGAATCTTGAATCAC-T-------ACTAACAAAGCTCTTCTG 1246
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1189 GATCGGTCCCTGTGAATACGAATCTTGAATCACCTTTTTTTTACTAACAAAGCTCTTCTG 1248
Query 1247 AGTTGTGTAAGCTT-C--CA-CACGTTGATGAATTTTGGAAATTTTAGTGTATAAAACGC 1302
|||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1249 AGTTGTGTAAGCTTGCTTCAACACGTTGATGAATTTTGGAAATTTTAATGTATAAAACGC 1308
Query 1303 GATGACCATCGTCTTCAAACGCTCTTT 1329
| |||||| ||||||||||||||||||
Sbjct 1309 GTTGACCAGCGTCTTCAAACGCTCTTT 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5