BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495999
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58740.1 | Symbols: | HSP20-like chaperones superfamily pro... 970 0.0
> AT5G58740.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr5:23725774-23727614 REVERSE LENGTH=725
Length=725
Score = 970 bits (525), Expect = 0.0
Identities = 624/670 (93%), Gaps = 14/670 (2%)
Strand=Plus/Plus
Query 1 AACTACAATCAACGGTGATCGATTTCGCCGGGAACGGAGAAGAAAACCCTAGATATGGCG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 AACTACTATCAACGGTGATCGATTTCGCCGGGAACGGAGAAGAAAACCCTAGATATGGCG 92
Query 61 GAGAAGCTTGCGCCAGAGAAGCGACATGATTTCATTCACAACGGTCAAAAGGTGTTTGAT 120
||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||
Sbjct 93 GAGAAGCTTGCGCCAGAGAAGAGACACGATTTCATTCACAATGGTCAAAAGGTATTTGAG 152
Query 121 TGGGATCAAACCTTAGAAGAAGTGAACATGTACATAACTTTGCCTCCCAATGTTCCTCCA 180
|||||||||||| | ||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 153 TGGGATCAAACCCTGGAAGAAGTGAACATGTACATAACTTTGCCGCCAAATGTTCATCCA 212
Query 181 AAGGCTTTCCACTGCAAAATCCAGTCGAAACATATCGAAGTTGGCATCAAAGGCAACCCT 240
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 AAGTCATTCCACTGCAAAATCCAGTCGAAACATATCGAAGTTGGCATCAAAGGCAACCCT 272
Query 241 CCTTATCTCAATCATGATCTTAGTGCTCCTGTGAAGACAGATTGCTCGTTCTGGACTCTA 300
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 273 CCCTATCTCAATCACGATCTTAGTGCTCCTGTGAAGACTGATTGCTCGTTCTGGACTCTA 332
Query 301 GAGGATGATATAATGCACATTACCCTGCAGAAGAGGGAGAAAGGGCAGACATGGGCATCG 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 333 GAGGATGATATAATGCACATTACCCTGCAGAAGAGGGAGAAAGGGCAAACATGGGCATCA 392
Query 361 CCGATTCTGGGACAGGGTCAGTTGGATCCTTACGCCACTGATCTTGAGCAGAAGCGGCTC 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 393 CCGATTCTGGGACAGGGTCAGTTAGATCCTTACGCCACTGATCTTGAGCAGAAGCGGCTC 452
Query 421 ATGCTCCAGAGGTTTCAAGAAGAGAACCCAGGATTCGACTTTTCGCAAGCTCAGTTCACG 480
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 453 ATGCTCCAGAGGTTTCAAGAAGAGAACCCGGGATTCGACTTCTCGCAAGCTCAGTTCTCG 512
Query 481 GGTAATTGTCCAGATCCAAGGAGCTTCATGGGGGGTATTCGTTCTGACTAAATA--TAGT 538
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 513 GGTAATTGTCCAGATCCAAGGAGCTTCATGGGCGGTATTCGTTCTGACTAAATAAATAAT 572
Query 539 CCTCCCACTATTGTTGCTATAGTAGTATGTCCAATATAA-A--CTCAAAAGTCAC--T-A 592
||||||| ||||||||||| ||||||||||| ||||| | |||||||||||| | |
Sbjct 573 AGTCCCACTCTTGTTGCTATAATAGTATGTCCATTATAACAAACTCAAAAGTCACCATGA 632
Query 593 C--AAA-A---TGTCTCATGGCTCATAAATAAACGCCCTGAGTCTCTGTTTCTATAACTC 646
| ||| | ||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 633 CTTAAACAAAATGTCTCATGTCTCATAAATAAACCCCCTGACTCTCTGTTTCTATAACTC 692
Query 647 GTAATGGCAA 656
||||||||||
Sbjct 693 GTAATGGCAA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5