BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496001
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58760.1 | Symbols: DDB2 | damaged DNA binding 2 | chr5:2373... 3014 0.0
> AT5G58760.1 | Symbols: DDB2 | damaged DNA binding 2 | chr5:23730500-23733698
REVERSE LENGTH=2007
Length=2007
Score = 3014 bits (1632), Expect = 0.0
Identities = 1888/2009 (94%), Gaps = 28/2009 (1%)
Strand=Plus/Plus
Query 1 ATCGAACCCAAAAAGAAACAAAACAGTTTGATTCGTATTCTCTTCCTTTTTGTCGGGTCG 60
||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 17 ATCAAACCCAAAAAGAAACAAAACTGTTTGATTCGTACTCTCTTCC-TTTTGTCGGGTCG 75
Query 61 TGAGAATTTTACCGAAAATGGGTTTAACGAGGAACA-ATAGAAAAACGGACCCAGAAATC 119
||||| |||||||||||||| ||| |||||||| || | ||||||| |||||||||||||
Sbjct 76 TGAGATTTTTACCGAAAATGAGTTCAACGAGGAGCAGA-AGAAAAAGGGACCCAGAAATC 134
Query 120 ATCATCGCTAGAGATACAGATTCCGAGTTAAGTTCGTCATCATCATCAGAAG-A-A-GAA 176
|||||||||||||||||||||||||||||||||||||| | | ||||| | | |||
Sbjct 135 GTCATCGCTAGAGATACAGATTCCGAGTTAAGTTCGTCAGAAGAAGAAGAAGAAGAGGAA 194
Query 177 GATAATTACCCTTTGTCGGAGTCGGAGGAGGAAGATGAAGCGGTTAAAAATGGAGGGAAA 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GATAATTACCCTTTCTCGGAGTCGGAGGAGGAAGATGAAGCGGTTAAAAATGGAGGGAAA 254
Query 237 ATTGAATTGGAGAAGAATAAAGCGAAAGGGAAAGCACCCATTACCGTTAAGCTTATTAAG 296
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 255 ATTGAATTGGAGAAGAATAAAGCCAAAGGGAAAGCACCCATTACCGTTAAGCTTATTAAG 314
Query 297 AAAGTTTGCAAAGTTTGTAAACAGCCTGGTCATGAAGCTGGATTCAAAGGAGCAACTTAT 356
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 315 AAAGTTTGCAAAGTTTGTAAACAGCCTGGCCATGAAGCTGGATTTAAAGGAGCAACGTAT 374
Query 357 ATCGATTGTCCTATGAAACCTTGCTTCTTATGCAAAATGCCTGGCCACACCACGATGTCC 416
||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||
Sbjct 375 ATCGATTGTCCTATGAAGCCTTGCTTCTTGTGTAAAATGCCTGGCCACACCACAATGTCC 434
Query 417 TGTCCTCATAGAGTGGTTACTGACCATGGAATACTCCCAACTTCTCATAGGAACACAAAG 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 435 TGTCCTCATAGAGTGGTTACTGACCACGGAATACTCCCAACTTCTCATAGGAATACAAAG 494
Query 477 AATCCTATTGACTTTGTGTTCAAGCGCCAACTCCAACCAAGAATTCCCCCAATCAAACCA 536
|| ||||||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 495 AACCCTATTGACTTTGTGTTCAAGCGCCAACTCCAACCGAGAATTCCTCCTATTAAACCA 554
Query 537 AAATATGTGATCCCGGATCAAGTTCATTGTGCAGTTATTCGATACCACAGCAGACGTGTT 596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 555 AAATATGTGATCCCGGATCAAGTTCATTGTGCAGTTATTAGATACCACAGCAGACGTGTT 614
Query 597 ACATGTTTGGAGTTCCATCCAACAAAGAACAACATTCTTCTCTCTGGAGATAAGAAAGGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 ACATGTTTGGAGTTCCATCCAACAAAGAACAACATTCTTCTCTCTGGAGATAAGAAAGGG 674
Query 657 CAAATCGGAGTCTGGGATTTTGCAAAAGTGTATGAGAAGAATGTGTATGGAAACATACAC 716
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 675 CAAATTGGAGTCTGGGATTTTGGAAAAGTGTATGAGAAGAATGTGTATGGAAACATACAT 734
Query 717 TCTATTCAAGTTAATAATATGCGGTTTAGTCCCACAAATGATGATATGGTTTATTCTGCA 776
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 735 TCTGTTCAAGTTAATAATATGCGGTTTAGTCCCACAAATGATGACATGGTTTATTCTGCA 794
Query 777 TCCTCTGATGGAACAATTGGTTATACTGACCTGGAAACTGGAACTTCATCAACTTTGCTG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TCCTCTGATGGAACAATTGGTTATACTGACCTGGAAACTGGAACTTCATCAACTTTGCTG 854
Query 837 AATATCAACCCCGATGGATGGCAGGGCCCAAACAATTGGAAAATGCTGTACGGTATGGAT 896
||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 855 AATCTCAACCCTGATGGATGGCAGGGCGCAAACAGTTGGAAAATGCTGTACGGTATGGAT 914
Query 897 ATAAACTCGGAGAAAGGTGTAGTGCTAGCTGCTGATAATTTTGGGTTTCTTCACATGATC 956
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 915 ATAAACTCGGAGAAAGGTGTAGTGCTTGCTGCTGATAATTTTGGGTTTCTTCACATGATC 974
Query 957 GACCATCGTACCAATAACGGAACAGGTGAGCCAATTTTGATACACAAGCAAGGAAGCAAA 1016
|| ||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||
Sbjct 975 GATCATCGTACCAATAACAGTACGGGTGAGCCTATTCTGATACACAAGCAAGGAAGCAAA 1034
Query 1017 GTT-GTTGGCCTCGACTGCAACCCAGTCCAGCCTGAGCTTCTTCTCAGTTGTGGGAACGA 1075
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1035 GTTTGT-GGCCTCGACTGCAACCCTGTCCAGCCTGAGCTTCTTCTCAGTTGTGGGAACGA 1093
Query 1076 TCATTTTGCACGAATATGGGATATGCGTAAACTACAACCTAAAGCTTCTCTTAATGATCT 1135
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1094 TCATTTTGCGCGAATCTGGGATATGCGTAAACTACAACCTAAAGCTTCTCTTCATGATCT 1153
Query 1136 TGCACACAAACGAGTAGTCAACTCTGCTTATTTCTCTCCATCATCAGGCACGAAAATCCT 1195
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1154 TGCACACAAACGAGTAGTCAACTCTGCTTACTTCTCTCCATCATCAGGCACGAAAATCCT 1213
Query 1196 AACGACCTGTCAGGACAACCGTATTCGAATATGGGACTCTATCTTCGGGAACTTGGATTT 1255
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1214 CACGACGTGTCAGGACAACCGTATTCGAATATGGGACTCTATCTTCGGGAACTTAGATTT 1273
Query 1256 GCCAAGCCGAGAGATTGTTCATAGCAATGATTTCAATCGGCATTTGACGCCATTCAAAGC 1315
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1274 GCCAAGCCGAGAGATTGTTCATAGTAATGATTTCAATCGGCATTTGACACCATTCAAAGC 1333
Query 1316 TGAATGGGATCCTAAGGATACCTCGGAGTCACTCATTGTGGTTGGTCGTTACATCAGTGA 1375
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1334 TGAATGGGACCCTAAGGATACCTCGGAGTCACTCATCGTGATTGGTCGTTACATCAGTGA 1393
Query 1376 AAACTACAATGGAACTGCTCTTCACCCAATAGATTTCATTGATGCAAGCAATGGACAATT 1435
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 AAACTACAACGGAACTGCTCTTCACCCAATAGATTTCATTGATGCAAGCAATGGACAATT 1453
Query 1436 GGTTGCAGAGGTTATGGATCCTAACATCACAACTATTACGCCAGTCAACAAGTTGCATCC 1495
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1454 GGTTGCAGAGGTTATGGATCCAAACATCACAACTATTACTCCAGTCAACAAGTTGCATCC 1513
Query 1496 GCGCGATGATGTTTTAGCTTCAGGAAGTTCAAGGTCTCTGTTTATTTGGCGGCCACAGGA 1555
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1514 TCGCGATGATGTTTTAGCTTCAGGAAGTTCAAGGTCGCTGTTCATTTGGAGGCCACAGGA 1573
Query 1556 TAAAACAGAGATGGTTGAGGAGAAGAAGGATAAAAAGATTATCGTATGTTCTGGCGACAG 1615
||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||
Sbjct 1574 TAATACAGAGATGGTTGAGGAGAAGAAGGATAAGAAGATTATCATATGTTATGGTGACAG 1633
Query 1616 CAAGAAGAAAGGAAAGAAGCAAAAGCGTGGCAGCGATGATGAAGACGACGAAGATGACAT 1675
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1634 CAAGAAGAAAGGAAAGAAGCAAAAGCGTGGCAGCGATGATGAAGACGATGAAGATGACAT 1693
Query 1676 GTTTAGCTCTAAAGGCAAAAACATTAAAGTCAACAAGTCTCAAGCAAAAACAACCAAGTC 1735
||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct 1694 ATTTAGCTCTAAAGGCAAAAACATAAAAGTCAATAAGTATCAAGCAAAAACAACCAAG-- 1751
Query 1736 TACTCGGAAGACAAAAACTTAAGATTAGTAAAGAAGGTTGTTATGTATAACTAACTTTTA 1795
| | ||||||||||||| || ||| |||||||| |||||||||||||||||| |
Sbjct 1752 -A-----A-GACAAAAACTTAATATGAGTGAAGAAGGTCGTTATGTATAACTAACTT--A 1802
Query 1796 CTCTGTATTTGTAGGTTTTCTAGTACAGAGTCTGTTTTAGTAGCATATACCCTGTTTTGC 1855
|||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1803 CTCTGTTTTTGTAGGTTTTCTTGTACAGAGTCTGTTTTAGTAGCATC--CCCTGTTTTGC 1860
Query 1856 CTTTGGCTGGCAAttttgctt-ttcttt-ttttGGGGGC--ATGATCGGCATTTGTATGG 1911
||||||| ||||||||||||| || ||| |||||||||| ||||||||| |||||||||
Sbjct 1861 CTTTGGC-GGCAATTTTGCTTCTTTTTTCTTTTGGGGGCGCATGATCGGCTTTTGTATGG 1919
Query 1912 CATTTTCTTGAATTCCTTTTTGGTGTAT-CTAAAGTATGAATTGCAGTAAGAATGTGGAA 1970
|||||||||||| |||||||||||| || || |||||||||||| |||||| ||||||||
Sbjct 1920 CATTTTCTTGAAATCCTTTTTGGTG-ATTCTTAAGTATGAATTGTAGTAAGTATGTGGAA 1978
Query 1971 TAGATCAATCTCGAATCTTCTCTTCAGTT 1999
| ||||||||| |||||||||||||||||
Sbjct 1979 TGGATCAATCTTGAATCTTCTCTTCAGTT 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99045675285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5