BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496002
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58770.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 1548 0.0
> AT5G58770.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:23734376-23735634 FORWARD LENGTH=1092
Length=1092
Score = 1548 bits (838), Expect = 0.0
Identities = 947/999 (95%), Gaps = 10/999 (1%)
Strand=Plus/Plus
Query 1 AATCGATTCTCTTAAGATGTTATCTCTACGAGTTCGTCCTCCTACATCCTTCGATTTCCG 60
||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct 5 AATCGATTCTCTTAAGATGTTATCTCTACGAGTTCCTACTCCCACTTCCTTCGATTTCCG 64
Query 61 GCGAT-TTAACGCCGG-GTATTTAGAGCGGCGATGGCGGTTAAGTAGAGACT-GCTTTCT 117
||||| | || ||||| | ||||||||||||||||||||||||||||||| | |||||||
Sbjct 65 GCGATATCAA-GCCGGAG-ATTTAGAGCGGCGATGGCGGTTAAGTAGAGA-TAGCTTTCT 121
Query 118 CTCTTTCTCGCCAAAATTGGAGGAAAACAGAGGAGTCCGATTCGGAGTCAAATCTTCTAA 177
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 122 CTCTTTCTCGCCAAAATTCGAGGAAAACAGAGGATTCCGATTCGGAGTCAAATCTTCCAA 181
Query 178 ATCGGAGGTTTCGTTTACGGCGGCGGAGGAGGAAGAAACTCTGCCGGAAGAGCTTCAACC 237
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 182 ATCGGATGTTTCGTTTACGGCGGCGGAGGAAGAAGAAACTCTGCCGGAAGAGCTACATGC 241
Query 238 AGAGCTGATGCCGAAACACGTGGCGATTATAATGGACGGAAACGGAAGATGGGCAAAGAA 297
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 242 AGAGCTGATGCCGAAACATGTGGCGATTATAATGGACGGAAACGGAAGATGGGCGAAGAA 301
Query 298 TCGAGGTCTTCAACCTTGGGATGGTCACAGAGCTGGCGTTGAAGCTTTGAAAGAGATCGT 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCGTGGTCTTCAACCTTGGGATGGTCACAGAGCTGGCGTTGAAGCTTTGAAAGAGATCGT 361
Query 358 TGAGCTTTGTGGTAAATGGGGAATTCAAGTCCTCACTGTTTTCGCCTTCTCTACTGATAA 417
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 362 TGAGCTTTGTGGTAAATGGGGAATTCAAGTCCTTACAGTTTTCGCTTTCTCTACTGATAA 421
Query 418 TTGGATTAGACCAAGGATTGAGATTGATTTCTTGTTTAGTTTATTCGAGAGAGCACTCAA 477
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 422 TTGGATTAGACCAAGAATTGAGATTGATTTCTTGTTTAGTTTATTTGAGAGATCACTCAA 481
Query 478 ATCAGAATTTCAGAACTTAGCCGAGAACAATGTTCGGATATCGATTATTGGAGATTCATC 537
| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 482 AACAGAATTTCAGAACTTAGCCAAGAACAATGTTCGGATATCGATCATTGGAGATTCCTC 541
Query 538 GAAACTGCCAAAATCTCTTTTAAGAGTGATTAACGAAGTTGAGGAAGTTACAAAGAACAA 597
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GAAACTTCCGAAATCTCTTTTAAGAGTGATTAACGAAGTTGAGGAAGTTACAAAGAACAA 601
Query 598 CACGAGGCTTCAGCTAATCGTAGCGGTTGGTTACAGTGGGAAATACGATGTTTTACAAGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CACGAGGCTTCAGCTAATCGTAGCGGTTGGTTACAGTGGGAAATACGATGTTTTACAAGC 661
Query 658 GTGTAGAGGTATCGCGCAG-AGAGTTAAAGATGGCGAGATCGGAGTTGAGGAGATAGACG 716
|||||||||||||||| || ||||| ||||||||||| |||| |||||||||||||||||
Sbjct 662 GTGTAGAGGTATCGCG-AGGAGAGTGAAAGATGGCGAAATCGAAGTTGAGGAGATAGACG 720
Query 717 AGAGACTGATTGAGGAAGAATTGGAGACCAATTGTACTGAGTTTCCTTACCCGGATTTGC 776
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 721 AGAGACTGATTGAGGAAGAATTGGAGACGAATTGTACTGAGTTTCCTTACCCGGATTTAC 780
Query 777 TGATAAGAACGAGTGGTGAGCTTAGAGTGAGTAACTTCTTGTTGTGGCAATTGGCTTATA 836
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTATAAGAACGAGTGGTGAGCTTAGAGTGAGTAACTTCTTGTTGTGGCAATTGGCTTATA 840
Query 837 CAGAGCTCTTT-TTTGCTCAAGAACTTTGGCCTGATTTTGGGAGAAGTGGTTTTATCAAA 895
||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 841 CAGAGCT-TTTCTTTGCTCAAGAACTTTGGCCTGATTTTGGGAGAAGCGGTTTTATCGAA 899
Query 896 GCTTTAACGTCGTTTCAGCAGAGACAACGACGCTTTGGTGGTCGGAAATCTTGAATTTCT 955
||||| | |||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 900 GCTTTGATGTCGTTTCAGCAGAGACAACGACGCTTTGGTGGTCGTAAATCTTGATTTTCT 959
Query 956 TGCAACTGGTGTAATGAAAACTGTATATGATGTGTAATA 994
||||| ||||||||||||||||| |||||||||||||||
Sbjct 960 TGCAAATGGTGTAATGAAAACTGAATATGATGTGTAATA 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5