BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496003
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58782.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 1334 0.0
AT5G58780.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 878 0.0
AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase | chr2... 712 0.0
AT2G23400.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 315 6e-85
> AT5G58782.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:23738147-23739468 REVERSE LENGTH=1067
Length=1067
Score = 1334 bits (722), Expect = 0.0
Identities = 847/907 (93%), Gaps = 10/907 (1%)
Strand=Plus/Plus
Query 1 tcttcacactctctacaatgttgtctctgctctgtttccttctgtctcttctctttcttc 60
|||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||
Sbjct 22 TCTTCACACTCTCTACAATGTTGTCTATGCTCTGGTTCCTTCTATCTCTTCTCTCTCTTC 81
Query 61 ttctacttccttgtctccgaccttgcttttctGCTAAAGGATCTCTGAAAGATAAAAAGA 120
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 82 TTCTACTTCCTTGTCTCCGACCTTGCTTTCCTGCTAAAGGATCTCTGAAAAACAAAAAGA 141
Query 121 AGATTGACAAGGGAACTTATGTGGTCGGAGAGGAGGAGCCACCTAAAGGGCTTCGA-AGA 179
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||
Sbjct 142 AGATTGACAAGGGAACTTATGTGGTCGGAGAGGAGGAGACACCTAAAGAGCTTC-AGAGA 200
Query 180 GAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAATCGGAGATGGGCGAAACAG 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 201 GAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAACCGGAGATGGGCTAAACAG 260
Query 240 GCCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGG-TTAATAGAGTTCGC 298
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 261 ACCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGGCTT-CTCGAGTTCGC 319
Query 299 CGAGCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTTCTCCACTGAGAA 358
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TGACCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTTCTCCACTGAGAA 379
Query 359 TTGGGGAAGACACAAGATTGAAGTCAAATGCTTGATGTATTTGTTCCAACGTTACCTCAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTGGGGAAGACACAAGATTGAAGTCAAATGCTTGATGTATTTGTTCCAACGTTACCTCAA 439
Query 419 GTCAAAGATCCAATTCTTCCAGAGCAAGGAAATCCGAGTTTCTGTTATCGGGAATCTTGC 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GTCAAAGATCCAATTTTTCCAGAGCAAGGAAATCCGAGTTTCTGTTATCGGGAATCTTGC 499
Query 479 GAAGATTCCGGAATCTCTCCTCGGAATAAT-CACAGAGATAGAGGATGCTACAAAGAGTT 537
|||||| || || ||||||||| ||| | | ||| ||| ||||||| |||||||||||||
Sbjct 500 GAAGATCCCTGAGTCTCTCCTCCGAACAGTTCAC-GAGTTAGAGGAAGCTACAAAGAGTT 558
Query 538 ACAAGAAGAAGCATCTCATCTTGGCCATAGATTACAGCGGGAGATTCGACATCTTGCGTG 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 559 ACAAGAAGAAGCATCTCATCTTGGCCATAGATTACAGCGGGAGATTCGACATCTTGGGTG 618
Query 598 CTTGCAAGAGCATTGTGAAGAAATCAGAACAAGGTTTGATCCGAGAGGAAGAAGTGGACG 657
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 619 CTTGCAAGAACATTGTGAAGAAATCAGAACAAGGTTTGATCCGAGAGGAAGACGTGGACG 678
Query 658 AGACGTTGTTGGAGAGAGAGCTTCAGAC-CAAGTGTACAGAGTTCCCAAGTCCTGATCTC 716
|||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 679 AGACGTTGTTCGAGAGAGAGCTTCAGACTCG-GTGTACCGAGTTCCCAAGTCCTGATCTC 737
Query 717 TTGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTCGCTTAT 776
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 738 TTGATTAGGACTAGTGGGGAACAGAGGATTAGTAACTTCTTCTTGTGGCAGCTCGCTTAT 797
Query 777 ACCGAGCTCTTCTTCTCACCGGTCCTTTGGCCTGATTTTGACAAGGATAAGCTTT-TAGA 835
|||||| | ||||| || || || |||||||||||||| || ||| | ||| ||| ||||
Sbjct 798 ACCGAGTTTTTCTTTTCGCCTGTACTTTGGCCTGATTTCGATAAGCAGAAG-TTTATAGA 856
Query 836 CGCCCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGCTGTCGGGTTTGATCCACATT 895
||||||| |||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 857 GGCCCTGGTTTCGTATCAGCGCAGGGATAGACGATTTGGCTCCCGGCTTTGATCCACATT 916
Query 896 TGATCCT 902
|||||||
Sbjct 917 TGATCCT 923
> AT5G58780.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:23735629-23737335 REVERSE LENGTH=1086
Length=1086
Score = 878 bits (475), Expect = 0.0
Identities = 648/731 (89%), Gaps = 13/731 (2%)
Strand=Plus/Plus
Query 167 AGG-GCTTCGAAGAGAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAATCGGA 225
||| ||| | ||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 239 AGGAGCTACAAAGAGAGCTGATGCCAAGACATGTGGCAGTGATAATGGACGGAAACCGGA 298
Query 226 GATGGGCGAAACAGGCCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGG- 284
||||||| |||| |||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 299 GATGGGCCAAACGGGCCGGATTGCTGACGTCACAAGGCCACGAGGCCGGAGCTAAACGGC 358
Query 285 TTAATAGAGTTCGCCGAGCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCT 344
|| ||||||||| ||||||| ||||| ||| | ||||| |||| || |||||||||||
Sbjct 359 TT-ATAGAGTTCTCCGAGCTTTGCTTTAAATTGGGGATTCATACAGTTTCAGCTTTTGCC 417
Query 345 TTCTCCACTGAGAATTGGGGAAGACACAAGATTGAAGTCAAATGCTTGATGTATTTGTTC 404
|||||||| |||||||||||||||||||||||||| || || |||||||||| |||| ||
Sbjct 418 TTCTCCACAGAGAATTGGGGAAGACACAAGATTGAGGTTAAGTGCTTGATGTCTTTGATC 477
Query 405 CAACGTTACCTCAAGTCAAAGATCCAAT-TCTTCCAGAGCA-AGGAAATC-CGAGTTTCT 461
|||| |||||||||||| |||||||||| | ||||| || | |||||| | |||||||||
Sbjct 478 CAACATTACCTCAAGTCCAAGATCCAATAT-TTCCAAAG-AGAGGAAA-CTCGAGTTTCT 534
Query 462 GTTATCGGGAATCTTGCGAAGATTCCGGAATCTCTCCTCGGAATAAT-CACAGAGATAGA 520
||||||||||| || ||||||| || || ||||||||| ||| | | || |||||||||
Sbjct 535 GTTATCGGGAACCTAACGAAGATCCCTGAGTCTCTCCTCCGAACAGTCCA-AGAGATAGA 593
Query 521 GGATGCTACAAAG-AGTTACAAGAAGAAGCATCTCATCTTGGCCATAGATTACAGCGGGA 579
||| ||||| || || || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 594 GGAAGCTAC-GAGAAGCTATAAGAAGAAGCATCTCATATTGGCAATAGATTACAGCGGGA 652
Query 580 GATTCGACATCTTGCGTGCTTGCAAGAGCATTGTGAAGAAATCAGAACAAGGTTTGATCC 639
|||| ||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 653 GATTAGACATCTTGCGAGCTTGCAAGAGTATTGTGAAGAAATCAGAAAAAGGGTTGATCC 712
Query 640 GAGAGGAAGAAGTGGACGAGACGTTGTTGGAGAGAGAGCTTCAGACCAAGTGTACAGAGT 699
|||||||||| || |||||| | ||| | || |||||||||| ||| || ||||| ||||
Sbjct 713 GAGAGGAAGATGTAGACGAGGCATTGATCGAAAGAGAGCTTCTGACAAATTGTACTGAGT 772
Query 700 TCCCAAGTCCTGATCTCTTGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCT 759
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCCCAAGTCCTGATCTATTGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCT 832
Query 760 TGTGGCAACTCGCTTATACCGAGCTCTTCTTCTCACCGGTCCTTTGGCCTGATTTTGACA 819
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |
Sbjct 833 TGTGGCAACTTGCTTATACAGAGCTCTTCTTCTCGCCGGTCCTTTGGCCTGATTTCGATA 892
Query 820 AGGATAAGCTTTTAGACGCCCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGCTGTC 879
||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 893 AGGATAAGCTTCTAGAGGCCCTGGTTTCGTATCAGCGCCGGGAAAGACGATTTGGCTGTC 952
Query 880 GGGTTTGATCC 890
|||||||||||
Sbjct 953 GGGTTTGATCC 963
> AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase | chr2:9966130-9967772
REVERSE LENGTH=1060
Length=1060
Score = 712 bits (385), Expect = 0.0
Identities = 627/742 (85%), Gaps = 23/742 (3%)
Strand=Plus/Plus
Query 176 AAGAGAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAATCGGAGATGGGCGAA 235
|||||| || |||||||||||||||||| | ||| |||| || || ||||||||||| ||
Sbjct 229 AAGAGAACTAATGCCGAGACACGTGGCATTCATACTGGATGGGAACCGGAGATGGGCCAA 288
Query 236 ACAGGCCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGG-TTAATAGAGT 294
|| |||||||||| ||||||||||||| ||||||| |||||||||||| || ||||| |
Sbjct 289 ACGGGCCGGATTGACGACGTCACAAGGCCACGAGGCGGGAGCTAAACGGCTT-ATAGA-T 346
Query 295 -TCGCCGAGCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTTCTCCACT 353
||||||||||||||||| | | ||| | |||| |||||||||||||||||||||||
Sbjct 347 ATCGCCGAGCTCTGCTTCGAGTTGGGGGTTCATACAGTCTCAGCTTTTGCTTTCTCCACA 406
Query 354 GAGAATTGGGGAAGACACAAGATTGA-AGTCA-AATGCTTGATGTATTTGTTCCAACGTT 411
||||||||||||||| |||||||||| | | | || |||||||| |||| |||||| |
Sbjct 407 GAGAATTGGGGAAGAGACAAGATTGAGATTGATAA--CTTGATGTCTTTGATCCAACACT 464
Query 412 ACCTC---AAGTCAAAGATCCAATTCTTCCAGAGCA-AGGAAATCCGAGTTTCTGTTATC 467
||| | ||||| || ||| |||||||||| || | |||| | || ||||||||||||
Sbjct 465 ACCGCAATAAGTCCAACATCAAATTCTTCCACAG-ATCGGAAGTTCGCGTTTCTGTTATC 523
Query 468 GGGAATCTTGCGAAGATTCCGGAATCTCTCCTCGGAA-TAATCACA-GAGATAGAGGATG 525
|||||| ||||||| || |||||||||||| || |||| || ||||||||||| |
Sbjct 524 GGGAATAAAACGAAGATCCCTGAATCTCTCCTC-AAAGAAATC-CATGAGATAGAGGAAG 581
Query 526 CTA-CAAAGAGTTACAAGAAGAAGCATCTCATCTTGGCCA-TAGATTACAGCGGGAGATT 583
||| ||||| | |||||||| || ||||||||| ||| || ||||||||||||||| |||
Sbjct 582 CTACCAAAG-GCTACAAGAATAAACATCTCATCATGG-CAGTAGATTACAGCGGGAAATT 639
Query 584 CGACATCTTGCGTGCTTGCAAGAG-CATTGTGAAGAAATCAGAACAAGGTTTGATCCGAG 642
|| ||| ||| |||||||||||| | ||||||||||||||||| |||| ||||||||||
Sbjct 640 TGATATCATGCATGCTTGCAAGAGTC-TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAG 698
Query 643 AGGAAGAAGTGGACGAGACGTTGTTGGAGAGAGAGCTTCAGACCAAGTGTACAGAGTTCC 702
||||||| || |||||| | ||| | |||||||||||| ||| || |||| || ||||
Sbjct 699 AGGAAGATGTAGACGAGGCATTGATCGAGAGAGAGCTTTTGACAAATTGTAGTGACTTCC 758
Query 703 CAAGTCCTGATCTCTTGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGT 762
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CAAGTCCTGATTTAATGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGT 818
Query 763 GGCAACTCGCTTATACCGAGCTCTTCTTCTCACCGGTCCTTTGGCCTGATTTTGACAAGG 822
||||||| |||||| ||||||| |||||||| ||||| ||||||||||||| || ||||
Sbjct 819 GGCAACTTGCTTATTCCGAGCTTTTCTTCTCGCCGGTATTTTGGCCTGATTTCGATAAGG 878
Query 823 ATAAGCTTTTAGACGCCCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGCTGTCGGG 882
|||||||| |||| || || | |||||||||||| ||||||||||||||||| |||||||
Sbjct 879 ATAAGCTTCTAGAGGCTCTTGCTTCGTATCAGCGTAGGGAAAGACGATTTGGTTGTCGGG 938
Query 883 TTTGATCCACATTTGATCCTCT 904
|||||||||| ||| |||||||
Sbjct 939 TTTGATCCACCTTTCATCCTCT 960
> AT2G23400.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr2:9963978-9965229 REVERSE LENGTH=762
Length=762
Score = 315 bits (170), Expect = 6e-85
Identities = 244/280 (87%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 610 TTGTGAAGAAATCAGAACAAGGTTTGATCCGAGAGGAAGAAGTGGACGAGACGTTGTTGG 669
||||||||||||||||| |||| ||||||||||||||||| || |||||| | ||| | |
Sbjct 485 TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCG 544
Query 670 AGAGAGAGCTTC-AGACCAAGTGTACAGAGTTCCCAAGTCCTGATCTCTTGATTAGGACA 728
|||||||||||| | || || |||| || ||||||||||||||| | |||||||||||
Sbjct 545 AGAGAGAGCTTCTA-ACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACA 603
Query 729 AGTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTCGCTTATACCGAGCTCTTC 788
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 604 AGTGGAGAACAAAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCTTTTC 663
Query 789 TTCTCACCGGTCCTT-TGGCCTGATTTTGACAAGGATAAGCTTTTAGACGCCCTGGATTC 847
| ||| ||||| || ||||||||||| || |||||||||||| |||| ||||| | |||
Sbjct 664 TACTCGCCGGTA-TTGTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCCCTCGCTTC 722
Query 848 GTATCAGCGCAGGGAAAGACGATTTGGCTGTCGGGTTTGA 887
||||||| ||||||||||||||||||| ||||| || |||
Sbjct 723 GTATCAGGGCAGGGAAAGACGATTTGGTTGTCGCGTGTGA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5