BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496013
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58900.1 | Symbols: | Homeodomain-like transcriptional regu... 1613 0.0
> AT5G58900.1 | Symbols: | Homeodomain-like transcriptional regulator
| chr5:23783123-23785334 REVERSE LENGTH=1686
Length=1686
Score = 1613 bits (873), Expect = 0.0
Identities = 1026/1100 (93%), Gaps = 9/1100 (1%)
Strand=Plus/Plus
Query 497 aaaaTTCGTAAATCCGTTGACCTTTGTCGGTATGATTTGTTCTTACTTATCGTaaaaaaa 556
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 582 AAAATTCGTAAATCCGTTGACCTTTGTCGGCATGATTTGTTCTTACTTACCGTAAAAAAA 641
Query 557 aCAGAGCTAGGTTTTAGTTTTCGGACATGGAGGTTCTGAGGCCGACGACGTCACACGTGT 616
||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 642 ACAGAGCTAGGTTTTAGTTTTCGGACATGGAGGTTATGAGACCGTCGACGTCACACGTGT 701
Query 617 CCGGTGGGAACTGGCTTATGGATGAGACTAAGAGCGCCGTCGCAGCTTCTGGCGAAGGTG 676
| |||||||||||||| ||||| || |||||||||| ||||||||||||||| |||||||
Sbjct 702 CAGGTGGGAACTGGCTCATGGAGGAAACTAAGAGCGGCGTCGCAGCTTCTGGTGAAGGTG 761
Query 677 CCACGTGGACGGCGGCGGAGAACAAGGCATTCGAGAATGCTTTGGCGGTTTACGACGACA 736
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CCACGTGGACGGCGGCAGAGAACAAGGCATTCGAGAATGCTTTGGCGGTTTACGACGACA 821
Query 737 ACACTCCTGATCGGTGGCAGAAGGTGGCGGCGGTGATTCCGGGGAAGACCGTGAGTGACG 796
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 822 ACACTCCTGATCGGTGGCAGAAGGTGGCTGCGGTGATTCCGGGGAAGACAGTGAGTGACG 881
Query 797 TCATTAGACAGTACAACGATCTGGAAGCTGACATCAGCAGCATCGAGGCCGGTTTAATCC 856
| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 882 TAATTAGACAGTATAACGATTTGGAAGCTGATGTCAGCAGCATCGAGGCCGGTTTAATCC 941
Query 857 CGGTCCCGGGTTACATCACCTCGCCGCCTTTCACTCTAGATTGGGCCGGTGGCGGT---- 912
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 942 CGGTCCCCGGTTACATCACCTCGCCGCCTTTCACTCTAGATTGGGCCGGCGGCGGTGGCG 1001
Query 913 --TGTAACGGGTTCAAACCGGGTCATCAGGTTTGTAACAAACGGTCTCCGGCCGGTAGAT 970
||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 1002 GATGTAACGGGTTTAAACCGGGTCATCAGGTTTGTAATAAACGGTCGCAGGCCGGTAGAT 1061
Query 971 CGCCGGAACTGGAGAGGAAGAAAGGCGTTCCTTGGACGGAAGAAGAACACAAGCTATTTC 1030
||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1062 CGCCGGAGCTGGAGCGGAAGAAAGGCGTTCCTTGGACGGAGGAAGAACACAAGCTATTTC 1121
Query 1031 TAATGGGTTTGAAGAAATACGGGAAAGGAGATTGGAGAAACATATCTCGGAACTTTGTGA 1090
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TAATGGGTTTGAAGAAATATGGGAAAGGAGATTGGAGAAACATATCTCGGAACTTTGTGA 1181
Query 1091 TAACGCGAACGCCAACACAAGTCGCTAGCCACGCCCAAAAGTACTTTATCCGGCAACTTT 1150
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1182 TAACGCGAACGCCAACACAAGTAGCTAGCCACGCCCAAAAGTACTTCATCCGGCAACTTT 1241
Query 1151 CTGGCGGCAAGGACAAAAGACGAGCAAGCATTCACGACATAACCACCGTGAATCTCGAAG 1210
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1242 CCGGCGGCAAGGACAAGAGACGAGCAAGCATTCACGACATAACCACCGTAAATCTCGAAG 1301
Query 1211 ACGAAGCCTCTTTGGAGACCAATAAGAGCTCCATTGTTGTTGGAGAGCAGCGTTCAAGGC 1270
| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1302 AGGAGGCTTCTTTGGAGACCAATAAGAGCTCCATTGTTGTTGGAGATCAGCGTTCAAGGC 1361
Query 1271 TAACCGCATTTCCTTGGAACCCAACGGATAACAATGGAACGCATGCAGATGCTTTCAACA 1330
||||||| ||||||||||||| |||||| ||||||||||| || ||||| |||||||| |
Sbjct 1362 TAACCGCGTTTCCTTGGAACCAAACGGACAACAATGGAACACAGGCAGACGCTTTCAATA 1421
Query 1331 TAAGGATTGGAAACGCTATTAATGGCGTTCACTCGTACGGTCAGGTTCTGCTTGGAGGGT 1390
||| ||||||||||||||||| ||||||||| || ||||| |||||| || |||||||||
Sbjct 1422 TAACGATTGGAAACGCTATTAGTGGCGTTCATTCATACGGCCAGGTTATGATTGGAGGGT 1481
Query 1391 TTAACAATGCAGATTCTTGCTATGACGCGCAAAACACAATGTTTCAACTATAGCTAATGG 1450
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1482 ATAACAATGCAGATTCTTGCTATGACGCCCAAAACACAATGTTTCAACTATAGCTAATGA 1541
Query 1451 ATCATGCATCTCTCTAATTAAAGGGTGTAAGTGAAAATCTTAATTTTTCATATGGACGAA 1510
| || |||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 1542 AG-ATCCATCTCTCTAATTAAAAAGTGTAAGTTAAATTCTTAATTTTTCATATGGACGAA 1600
Query 1511 ACAATCATATTTGGTAACTGTACAATAAACGTCCATTGTTTTAATTCCAAATTGAAATAG 1570
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1601 ACAATCATATTTGGCAATTGTATAATAAACGTCCATTGTTTTAATTCCAAATTGAAATAG 1660
Query 1571 T-AGATAAAAGTCTCGTGAC 1589
| | ||||||||||| ||||
Sbjct 1661 TTA-ATAAAAGTCTCTTGAC 1679
Score = 566 bits (306), Expect = 3e-160
Identities = 392/430 (91%), Gaps = 20/430 (5%)
Strand=Plus/Plus
Query 87 tttttttCATTTTCTGTAGCCATATGTTTATTTTCCCGAGAAATATTATCCACACCCAGC 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TTTTTTTCATTTTCTGTAGCCATATGTTTATTTTCCCGAGAAATATTATCCACACCCAGA 188
Query 147 TTTTTAAATCTCTTT-AACTCTGAGTCTCTGATACTTAAATACCACTCATGCT--T-ATT 202
| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 189 TCTTTAAATCTCTTTTAACTCTGAGTCTCTGATACTTAAATACCACTCATGCTGCTTATT 248
Query 203 AGCTCCACCAAATCTGGAAAACCAATAGATTCGTTTT---------GCAAAA-TCTCAGA 252
|||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 249 AGCTCCACCAAATCTGGAAAACCAATAGATTCTTTTTATTTCTTCTGCAAAAATCTCAGA 308
Query 253 GCTACCCTAAAAATTCTCTCTTTTTGACTCACTAACCAGATTTCGACTAGATTTTACTCA 312
||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 309 GCTACCCTAAAAATTCTCTCTTTTTGACTCACTTACCAGATCTCCACTAGATTTTACTCA 368
Query 313 ATTCATTTGCAAAAGGATAAAACTTTTATAGATTCCTTGAAGTGGGTGTGGGTCTAAGCA 372
|||| ||| ||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 369 ATTCTTTTTCAAAAGGTTTAAACTTTTATAGATTCCTTGAAGTGGGT------CTAAGCA 422
Query 373 ATGCTTCAAAGAAATTCCTATGGTTTCTTCTCTAAACAAAATAAAAGTGAAGTATCATTT 432
|||||||| ||||||||| ||| |||||||||||| |||||||||| |||||||||||||
Sbjct 423 ATGCTTCAGAGAAATTCCGATGATTTCTTCTCTAACCAAAATAAAAATGAAGTATCATTT 482
Query 433 GATAGTGATTTTTGTGTTCTTCCTTTGATTCTCTTATCTCTTTCTTCCCATCAATAAACC 492
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 483 GATAGTGATTTTTGTGTTCTTCTTTTGATTCTCTTATCTCTTCCTTCCCATCAATAAACC 542
Query 493 aaaaaaaaTT 502
|||||||||
Sbjct 543 CAAAAAAATT 552
Score = 143 bits (77), Expect = 6e-33
Identities = 83/86 (97%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1 AAGTTTATAATTTGGTTTCTGGTTTTAGTTTTCTTTCCATTTATGGGCTCATTTGCTTCT 60
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 5 AAGTTTATAATCTGGTTTCTGATTTTAGTTTTCTTTCCATTTATGGGTTCATTTGCTTCT 64
Query 61 TCTTGCACGTTATAGTTTTCCTAAtt 86
||||||||||||||||||||||||||
Sbjct 65 TCTTGCACGTTATAGTTTTCCTAATT 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5