BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496014
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58910.1 | Symbols: LAC16 | laccase 16 | chr5:23789522-23791... 2510 0.0
> AT5G58910.1 | Symbols: LAC16 | laccase 16 | chr5:23789522-23791681
REVERSE LENGTH=1572
Length=1572
Score = 2510 bits (1359), Expect = 0.0
Identities = 1502/1573 (95%), Gaps = 2/1573 (0%)
Strand=Plus/Plus
Query 1 ATGACGAACACCACGAAGCTGTGCTCGTCGAAGCCCATCGTCACCGTCAATGGA-AAGTT 59
||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||
Sbjct 1 ATGACGAACACCACGAAGCTGTGCTCGTCGAAGCCTATAGTCACCGTCAATGGACAA-TT 59
Query 60 TCCGGGCCCCACCATTGTTGCAAGAGAAGACGACACTCTTTTGATCAAAGTTGTGAATCA 119
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 60 TCCGGGACCCACCATTGTTGCAAGAGAAGGCGACACTATTTTGATCAAAGTTGTGAATCA 119
Query 120 CGTGAACTACAACGTCTCCATCCACTGGACAGGTTGGGCAGATGGACCGGCTTACATAAC 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTGAAGTACAACGTCTCCATCCACTGGACAGGTTGGGCAGATGGACCGGCTTACATAAC 179
Query 180 ACAATGTCCTATCCAACCGGGACAGAATTATCTCCACAATTTTACATTGACGGGTCAACG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACAATGTCCTATCCAACCGGGACAGAATTATCTCCACAATTTTACATTGACGGGTCAACG 239
Query 240 AGGAACCCTATGGTGGCATGCTCACATCTTGTGGCTTCGTGCCACGGTGCACGGCGCCAT 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 AGGAACCCTATGGTGGCATGCTCACATCTTGTGGCTTCGTGCTACGGTGCACGGCGCCAT 299
Query 300 TGTCATCTTGCCTAAGCTCGGTGTCCCATACCCTTTCCCTAAGCCCTACAAAGAGAAAAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTCATCTTGCCTAAGCTCGGTGTCCCATACCCTTTCCCTAAGCCCTACAAAGAGAAAAC 359
Query 360 AATTGTTCTTAGTGAATGGTGGAAATCGGACGTGGAAGAACTTATAAACGAGGCTTCAAA 419
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 CATTGTCCTTAGTGAATGGTGGAAATCGGACGTGGAAGAACTCATAAACGAGGCTTCAAG 419
Query 420 AATTGGAACAGCTCCTAGCGCTTCTGATGCACATACCATCAATGGTCATTCAGGCTCCAT 479
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 AATAGGAACAGCTCCTAGTGCTTCGGATGCACATACCATCAATGGTCATTCAGGCTCCAT 479
Query 480 CTCTAATTGTCCTTCCCAAAGTAGTTACGGTTTACCGGTGAGAGCAGGAAAGACGTACAT 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 480 CTCTAATTGTCCTTCCCAAAGTAGTTACGGTTTACCAGTGAGAGCAGGAAAGACATACAT 539
Query 540 GTTACGGATCATCAACGCGGCATTAAACGAAGAGCTCTTCTTTAAAATTGCTGGTCACGT 599
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTAAGGATCATCAACGCGGCGTTAAACGAAGAGCTCTTCTTTAAAATTGCTGGTCACGT 599
Query 600 ACTAACCGTTGTAGAAGTTGATGCTGTTTACACCAAACCGTATAAAACTGACACAGTATT 659
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTAACCGTTGTGGAAGTTGATGCTGTTTACACCAAACCGTATAAAACTGACACAGTATT 659
Query 660 CATCGCCCCGGGACAGACTACTAACGTTCTCTTAACAGCAAACGCAAACGCTGGTTCCAA 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 CATAGCCCCGGGACAGACTACTAACGTTCTCTTAACAGCAAACGCAAACGCTGGTTCAAA 719
Query 720 TTACATGGTCGCCGCCACAACATTTACGGACGCTCAAATCCCATACGACAACGTCACAGC 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TTACATGGTCGCCGCCACAACATTTACGGACGCTCACATCCCATACGACAACGTCACAGC 779
Query 780 CACCGCCACTCTCCACTACATCGGCCACACTGCCACCGTTTCTGCCTCCAAAAAGACCGT 839
||| ||||| |||||||| ||||| |||||| |||||||||| |||||||||| |||||
Sbjct 780 CACTGCCACCCTCCACTATATCGGTCACACTTCCACCGTTTCCACCTCCAAAAAAACCGT 839
Query 840 TCTCGCATCACTTCCGCCGCAAAACGCAACTTGGGTTGCGACCAAATTCACTAGATCACT 899
||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 840 TCTCGCATCACTTCCACCTCAAAACGCAACATGGGTTGCAACCAAATTCACTAGATCACT 899
Query 900 CCGGAGCTTGAACTCCCGCGAGTATCCGGCTAGGGTTCCAACAACCGTGGACCATTCCTT 959
| ||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 900 CAGGAGCTTAAACTCCCTCGAGTATCCAGCTAGGGTTCCAACAACCGTGGAACATTCCTT 959
Query 960 GTTCTTCACGGTAGGTCTTGGTGCAAACCCTTGCCAGAGCTGCAACAACGGTGTTCGCTT 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 GTTCTTCACGGTAGGTCTTGGTGCAAACCCTTGCCAGAGTTGCAACAACGGTGTTCGCTT 1019
Query 1020 AGTGGCCGGAATAAACAACGTAACGTTTACCATGCCTGAGACCGCTTTGCTCCAGGCTCA 1079
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1020 AGTGGCCGGAATAAACAACGTAACGTTTACCATGCCTAAAACCGCTTTACTCCAGGCTCA 1079
Query 1080 TTTCTTTAACATTTCCGGCGTGTTTACCGATGACTTCCCGGCGAACCCCTCGAATCCGTA 1139
||||||||||||||||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct 1080 TTTCTTTAACATTTCCGGCGTATTTACCGACGACTTCCCGGCGAAACCTTCCAATCCGTA 1139
Query 1140 TGACTATACGGCACCGGTAAAGATCGGCGTTAATGCTGCAACGATGAAAGGGACAAAGCT 1199
||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1140 TGACTATACCGCACCAGTAAAGCTCGGCGTTAATGCTGCGACGATGAAAGGGACAAAGCT 1199
Query 1200 TTACAGGCTTCCATACAACGCGACGGTGCAAATTGTTCTGCAGAATACAGCGATGATCTT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 TTACAGGCTTCCATACAACGCGACGGTGCAAATTGTTCTGCAGAATACAGCAATGATCTT 1259
Query 1260 GTCCGATAACCATCCGTTTCATCTTCACGGGTTTAACTTCTTCGAAGTCGGTAGAGGTAT 1319
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1260 GTCCGATAACCATCCGTTTCATCTTCACGGGTTTAACTTCTTCGAAGTGGGTAGAGGTTT 1319
Query 1320 GGGGAACTTTAACCCGGAAAAAGATCCGAAAATGTTCAATTTAGTGGATCCGGTAGAAAG 1379
|||||| |||||||||||||||||||||||| ||| || || |||||||||||||| ||
Sbjct 1320 GGGGAATTTTAACCCGGAAAAAGATCCGAAAGCGTTTAACTTGGTGGATCCGGTAGAGAG 1379
Query 1380 AAACACCGTTGGAGTTCCAGCCGGTGGTTGGACTGCCATTAGATTCATCGCCGACAATCC 1439
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 AAACACCGTTGGAGTTCCAGCCGGTGGTTGGACTGCCATAAGATTCATCGCCGACAATCC 1439
Query 1440 AGGGGTGTGGTTCATGCATTGTCACTTGGAATTACATACAACTTGGGGATTAAAGATGGC 1499
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1440 AGGGGTATGGTTCATGCATTGTCACTTGGAGTTACATACAACTTGGGGATTAAAGATGGC 1499
Query 1500 ATTCGTCGTCGACAATGGTCACGGCCCTGACCAGGCATTGCTTCCTCCACCCGCCGATCT 1559
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1500 ATTCGTCGTTGACAATGGTCACGGCCCTGACCAGTCATTGCTTCCTCCACCCGCTGATCT 1559
Query 1560 TCCCAAATGTTAG 1572
|||||||||||||
Sbjct 1560 TCCCAAATGTTAG 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5