BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496018
Length=2273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58950.1 | Symbols: | Protein kinase superfamily protein | ... 3326 0.0
AT3G46930.1 | Symbols: | Protein kinase superfamily protein | ... 612 5e-174
> AT5G58950.1 | Symbols: | Protein kinase superfamily protein
| chr5:23800928-23803673 REVERSE LENGTH=2310
Length=2310
Score = 3326 bits (1801), Expect = 0.0
Identities = 2155/2316 (93%), Gaps = 64/2316 (3%)
Strand=Plus/Plus
Query 1 TCTAAAAAGGCGTAAGAGGTCTGGATTTGTCAAAAAGGTCTTTGAGAATCCAAAAACGTC 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TCTAAAAAGGCGTAAGAGGTCTGGATTCGTCAAAAAGGTCTTTGAGAATCCAAAAACGTC 60
Query 61 TTATGGTTTAGCTCTC-GATTT-T-C-TC-ATTCGA--TTCCT---TCTTC----CTCCG 106
|||||||||||||||| |||| | | || |||| | ||||| |||| | |||
Sbjct 61 TTATGGTTTAGCTCTCAAATTTCTCCTTCGATTCCATCTTCCTCCGGCTTCAAGTCGCCG 120
Query 107 G--CTTC---AAGT-CG---C-C--GG--ATCTTCTTGAT-TTCCGATT--CACTTGGAC 149
| |||| | | || | | || || |||| | |||| || ||| |||
Sbjct 121 GATCTTCTTGATTTCCGATTCACTTGGCTTTCCTCTT-CTCTTCCTTTTAACAC-ACGAC 178
Query 150 GACGCTTCATAGTTTTTTGTTGTGATTCCGGAAGAGGCATGTAATTCAGGA-TTTCCGGC 208
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 179 GACGCTTCATAGTTTTTTGTTGTGATTCAGGAAGAGGTATGTAATTCAGGATTTTCCGGT 238
Query 209 GA-TTTGGTGGG-ACGTTTGGAGAAATTTCGAG-TTTTTAGTATTCGTAGTAAAGTTTTC 265
|| ||||||||| |||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 239 GATTTTGGTGGGAACGTTTGGAGAAATTTCGAGCTTAGTAGTATTCGTAGGAAAGTTTTC 298
Query 266 TTCtttttttttttGGTTTGTAGATTTTGTTGATTAATGGTTGAAGGTGAGAAATGGGGC 325
||| |||| || ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 299 TTC-----TTTTATGATTTGTAGTTTTTGTGGATTAATGGTTGAAGGTGAGAAATGGGGC 353
Query 326 TTCGATGGTTTTGAAGGGATTGTGTATCTTCGTGGAAATGAGATTGTTGGAGATTGCAGC 385
|||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 354 TTCGATGGATTTGAAAAGATTTTGTATCTTCGTGGAAATGAGATCGTTGGAGATTGCAGC 413
Query 386 AAGTCATCTGATTCGTATTCACGGGTTTGCTTAGGGACTTTGGAGAAACTGAGAGTTTTG 445
||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 414 AAGTCATCTCATTCGTATTCACGGGTTTGCTTAGGTACTTTGGAGATATTGAGAGTTTTG 473
Query 446 GTTGTTTAGTCTTTGAT-AAAAGGTTTG-TGAGTTTGTTTTTCGAGCTTAGAGATGGATG 503
||||||||||||||||| |||||| ||| | |||||| ||||||||||||||||||||||
Sbjct 474 GTTGTTTAGTCTTTGATAAAAAGG-TTGTTTAGTTTG-TTTTCGAGCTTAGAGATGGATG 531
Query 504 AAGAGGCTACTTCTTGGATTAGGAGGACTAAGTTTTCTCAAACGGTTTCTTATCGTTTGA 563
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 AAGAGGCTACTTCGTGGATTAGGAGGGCTAAGTTTTCTCAAACGGTTTCTTATCGTTTGA 591
Query 564 ATTCATCAAAGTTAGCTTCTCTCCCTTTTATGGTAAACCAAGATAAGATTTCTGGATTGA 623
|||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |
Sbjct 592 ATTCTTCAAAGTTAGCTTCTCTTCCTTTTATGATAAACCAAGATAAGTTTTCTGGATT-A 650
Query 624 AAA-CTATACCCCAGAGATCATCATCTTCATCGTCGGCATCATCGTCGGATCCCAAGTTG 682
||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct 651 AAAGCTATACCTCAGAGATCATCTTCTTCGTCGTCGGCATCATCATCGGATCCTAAGTTG 710
Query 683 GTTTCGAGTAACTCACAGACTACGGAAGATACCTCGAGTTTGGAA---GCTGATGTATAT 739
||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 711 GTTTCGAGTAACTCACAGACTACGGGAGATACTTCGAGTTTGGAAGCTGCTGATGTATAT 770
Query 740 GTTGTTGATTCGGAAATACAGACAAACCCTGTAACTAATAAACATAGATCTGTTTCTCCT 799
||||||||||||||||||||||||||||| || ||| |||| || |||||||||||||||
Sbjct 771 GTTGTTGATTCGGAAATACAGACAAACCCGGTTACTCATAAGCAGAGATCTGTTTCTCCT 830
Query 800 TCGCCTCAGATGGCTGTTCCTGATGTGTTTAAGGAAGCAAGATCTGAGCGTAAGAGATTT 859
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 831 TCGCCTCAGATGGCTGTTCCCGATGTGTTTAAGGAAGCGAGGTCTGAGCGTAAGAGATTT 890
Query 860 TCTACGCCACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAAGCCTAAGTTATCTCAT 919
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCTACTCCACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAAGCCTAAGTTATCTCAT 950
Query 920 AAAAACTCCTTTGAAAAGAGATCATTTAATTTGCGGTCTCCATCCGGTCCTATCAGAGAT 979
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 951 AAAAACTCCTTTGACAAGAGATCATTTAACTTGCGGTCTCCTTCAGGTCCTATCAGAGAT 1010
Query 980 CTTGGCACTCTGAGAATTCAAGAGAGGGTGAAGAGCAAGAAGGACACAGGATGGTCTAAG 1039
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1011 CTTGGCACTTTGAGAATTCAAGAGAGGGTCAAGAGCAAGAAGGACACTGGATGGTCTAAG 1070
Query 1040 CTTTTTGATAATACTGGTCGTAGAGTGAGTGCTGTAGAAGCTTCTGAAGAGTTCCGTGTT 1099
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1071 CTTTTTGATAATACTGGTCGTAGAGTGAGTGCTGTGGAAGCTTCTGAAGAGTTCCGTGTT 1130
Query 1100 GATATGTCAAAGTTGTTCTTTGGGCTTAAGTTTGCTCATGGGTTATACAGCCGGCTATAC 1159
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1131 GATATGTCAAAGCTGTTCTTTGGGCTTAAGTTTGCTCATGGTTTATACAGCCGGCTATAT 1190
Query 1160 CATGGTAAGTATGAAGATAAAGCTGTTGCCGTGAAGCTTATCACTGTACCTGATGATGAC 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CATGGTAAGTATGAAGATAAAGCTGTTGCCGTGAAGCTTATCACTGTACCTGATGATGAC 1250
Query 1220 GATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTACCAAGGAAGTCACCCTTTTG 1279
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1251 GATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTACCAAGGAAGTGACCCTTTTG 1310
Query 1280 TCTCGATTGACTCATCCGAATGTTATAAAGTTTGTGGGAGCGTATAAAGATCCGCCTGTA 1339
||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1311 TCTCGATTGACCCATCCAAATGTTATAAAGTTTGTTGGAGCGTACAAAGATCCGCCTGTA 1370
Query 1340 TATTGTGTCCTCACGCAGTATTTACCTGAAGGATCTTTAAGATCTTTTCTGCACAAGCCT 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TATTGTGTCCTCACGCAGTATTTACCTGAAGGATCTTTAAGATCTTTTCTGCACAAGCCT 1430
Query 1400 GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAGTTTGCTCTAGATATTGCAAGAGGA 1459
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1431 GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAGTTTGCTATAGATATTGCTAGAGGG 1490
Query 1460 ATGGAATATATTCACTCACGACACATAATTCATCGGGATCTTAAGCCAGAAAATGTATTG 1519
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1491 ATGGAATATATTCACTCACGACGCATAATTCATCGGGATCTTAAGCCAGAAAATGTATTG 1550
Query 1520 ATCGACGAAGACTTCCATTTGAAGATTGCTGACTTTGGCATAGCGTGCGAGGAGGAGTAC 1579
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1551 ATCGACGAAGAATTCCATTTGAAGATCGCTGACTTTGGCATAGCGTGCGAGGAGGAGTAC 1610
Query 1580 TGTGACATGTTGGCTGATGACCCTGGAACATATAGGTGGATGGCACCTGAAATGATAAAA 1639
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1611 TGTGACATGTTGGCTGATGACCCCGGAACATATAGGTGGATGGCACCTGAAATGATAAAA 1670
Query 1640 CGGAAACCACACGGGCGTAAGGCCGATGTTTACAGCTTTGGACTCGTTTTATGGGAAATG 1699
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1671 CGGAAACCACATGGACGTAAGGCCGATGTATACAGCTTTGGACTCGTTTTATGGGAAATG 1730
Query 1700 GTAGCTGGAGCAATCCCGTATGAGGACATGAATCCTATTCAAGCTGCTTTTGCAGTCGTA 1759
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1731 GTAGCTGGAGCAATCCCATATGAGGACATGAATCCTATTCAAGCTGCTTTCGCAGTCGTA 1790
Query 1760 CACAAGAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGATA 1819
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 CATAAGAACATTAGGCCAGCTATCCCGGGAGATTGTCCAGTAGCCATGAAAGCTCTGATA 1850
Query 1820 GAGCAGTGTTGGTCGGTTGCACCGGATAAGAGACCAGAGTTCTGGCAGATAGTGAAAGTG 1879
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1851 GAGCAGTGTTGGTCGGTTGCACCAGATAAGAGACCCGAGTTCTGGCAGATAGTGAAAGTG 1910
Query 1880 CTTGAACAGTTTGCGATTTCACTGGAACGTGAAGGGAACCTGAATCTGTCTTCGCA-CAA 1938
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 1911 CTTGAACAGTTTGCGATATCACTGGAACGTGAAGGGAACCTGAATCTGTCTTCG-AGCAA 1969
Query 1939 AATCTGTAAGGACCCAAGGAAAGGTCTGAAACATTGGATCCAGAAGCTTGGACCAGTCCA 1998
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1970 GATCTGTAAGGACCCAAGGAAAGGTCTGAAACACTGGATCCAGAAGCTTGGACCAGTCCA 2029
Query 1999 CggaggaggaggaggaggCGGTGGCAGCAGCAGCAGCGGCCTTGGTGGCTCAGCCTTGCC 2058
| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 C------GCAGGAGGAGGCGGTGGCAGCAGCAGCAGCGGCCTTGGTGGCTCAGCCTTGCC 2083
Query 2059 TAAGCCTAAATTCGCTTGAGAGACATG-AAGAGTCTATTTTGTAAATTTATATATAATAC 2117
|||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 2084 GAAGCCTAAATTCGCTTGAGAGACAGGAAAGAGTCTCTTTTGTAAATTTATATATAATAC 2143
Query 2118 AAAAAGAAGGGTTTTGTGTTTGTGTTGTATCCtttttttttGTGGATTGTTGTTGTTAGT 2177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 AAAAAGAAGGGTTTTGTGTTTGTGTTGTATCCTTTTTTTTTGTGGATTGTTGTTGTTAGT 2203
Query 2178 GATCTTTCATCGTCAATGTCATCTTCTCTGGATTTGTTGTGTAATGACTGCCAGCCAACT 2237
|||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 2204 GATCTTTCATCGTCAATGTCATCTTCTCTGGATTTGATGTGTAATGACTGCCA---A-CT 2259
Query 2238 GGAGAATGGTTGTGATTTGATGTTTATGGGATTCAA 2273
|| |||||||||||||||||| ||||||||||||||
Sbjct 2260 GGGGAATGGTTGTGATTTGATATTTATGGGATTCAA 2295
> AT3G46930.1 | Symbols: | Protein kinase superfamily protein
| chr3:17285643-17288032 FORWARD LENGTH=1844
Length=1844
Score = 612 bits (331), Expect = 5e-174
Identities = 919/1189 (77%), Gaps = 95/1189 (8%)
Strand=Plus/Plus
Query 752 GAA-ATACAGACAAACCCTGTAACTAATAA-ACATAGATCTGTTTCTCC-TTCGCCTCAG 808
||| || |||| || || || |||||||| | | |||||||||||||| || ||||||
Sbjct 527 GAAGATGCAGAGGAATCCAGTTACTAATAAGA-AGAGATCTGTTTCTCCGTT-GCCTCAT 584
Query 809 ATGGCTGTTCCTGATG-TGTTTAAGGAAGC-AAGATCTGAGCGTAAGAGATTTTCTACGC 866
|||||| || |||||| | |||| ||||| ||| ||||| |||||| |||||||| |
Sbjct 585 ATGGCTCTTTCTGATGCT-TTTATCGAAGCAAAG-TCTGATATTAAGAGGTTTTCTACTC 642
Query 867 CACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAA-GCCTAAGT--T-ATCTCATAAA 922
||||||| |||||||||||| | || ||||||||||| ||| |||| | || | |||
Sbjct 643 CACATCCTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCC-AAGTCGTCGTCCCGCAAA 701
Query 923 AACTCCTT-TGA-AAAGAGATCATTTAATTTGCGGT--C--TC-CA-TCCGGTCCTATCA 974
| | ||| ||| ||| | |||| ||||| | |||| | || || || |||||||| |
Sbjct 702 GA-TTCTTCTGAGAAA-AAATCAGTTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTA 759
Query 975 GAGATCTTGGCACTCTGAGAA-TTCAAGAGAGGGTG-AAGAGCAAGA-AGGACACAGGA- 1030
| |||||| | || | || || || ||||||||| | |||||||||| | || | || |
Sbjct 760 GGGATCTTAGTACGCAGA-AAGTTAAAGAGAGGG-GAAAGAGCAAGATA-GATA-AGAAG 815
Query 1031 TGGTCTAAGCT-TTTTGA-TAATACTGG-TCGTAGAGTGAGTGCTGTAGAAGCTTC-TGA 1086
| || ||| | | |||| | ||| || || || ||| ||| ||| || || | | |||
Sbjct 816 TCTTCAAAG-TCTGTTGACT-ATAGAGGTTC-TAAAGTAAGTTCTGCAGGAG-TGCTTGA 871
Query 1087 AGAGTTCCGT-GTTGATATGTCAAAGTTGTTCTT-TGGGCTTAAGTTTGCTCATGGGTTA 1144
||| | || | ||||| |||| |||||| |||| |||| || ||||||||| ||| |
Sbjct 872 AGAATGCC-TCATTGATGTGTCTAAGTTG-TCTTATGGGGATAGGTTTGCTCACGGGAAA 929
Query 1145 TACAGCCGGCTATACCATGGT-AAGTATGAAGATAAAGCTGTTGC-CGTGAAGCTTATCA 1202
|| |||| | | || |||||| || ||||||| ||||||||||| | ||||| ||||||
Sbjct 930 TATAGCCAGATTTATCATGGTGAA-TATGAAGGCAAAGCTGTTGCTC-TGAAGATTATCA 987
Query 1203 CTGTACCTGATG--A-TGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTA 1259
| | ||||| | | |||||| || || |||||||||||||||||| ||| ||||||
Sbjct 988 CAGCGCCTGAGGATAGTGACGA-CAT--ATTCTTGGGAGCTCGTTTAGAAAAAGAGTTTA 1044
Query 1260 CCAAGGAAGTCACCCTTTTGTCTCGATTGA-CTCATCCGAATGTTATAAAGTTTGTGGGA 1318
| ||||| ||| ||||| |||||| | | | ||||| ||||| | |||||||| |||
Sbjct 1045 TCGTGGAAGCCACTCTTTTATCTCGACTAAGC-CATCCAAATGTCGTTAAGTTTGTTGGA 1103
Query 1319 GCGTATAAAGATCCGCCTGTATATTGTGTCCTCAC-GCAGTATTTACCT-GAAGGATCTT 1376
| | | || ||| | | ||| || |||| | ||||| ||||| | ||| ||||
Sbjct 1104 --G--T-GA-AT---ACTGGAAACTGTATCATCACAG-AGTATGTACCTCG-AGGGTCTT 1152
Query 1377 TAAGATCTTTTCTGCACAAGCCT-GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAG 1435
||||||| | |||||||||| || ||| | | || ||||||||| || |||| || ||
Sbjct 1153 TAAGATCATATCTGCACAAG-CTCGAGCAGAAATCCCTTCCTTTGGAACAGCTAATCGAT 1211
Query 1436 TTTGCTCTAGATATTGC-AAGAGGAATGGAATATATTCACTCACGACACATAATTCATCG 1494
|||| ||| |||||||| || |||||||||||||||||||||| || | ||| ||||||
Sbjct 1212 TTTGGTCTGGATATTGCTAA-AGGAATGGAATATATTCACTCAAGAGAGATAGTTCATCA 1270
Query 1495 GGATCTTAAGCCAGAAAATGTATTGATCGACGAA-GACTTCCATTTGAAGATTGCTGACT 1553
|||||| ||||||||||| || ||||||||| || ||||| || ||||||||||||||||
Sbjct 1271 GGATCTGAAGCCAGAAAACGTGTTGATCGAC-AATGACTTTCACTTGAAGATTGCTGACT 1329
Query 1554 TTGGCATAGCGTGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCT-GGAACATAT 1612
||||||||||||||||||||||||||||||| | |||| ||| || | ||||| |||
Sbjct 1330 TTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTTGGGGGATAACA-TAGGAACTTAT 1388
Query 1613 AGGTGGATGGCACCTGAAATGATAAAACGGAAACCACACGGGCGTAAG-GCCGATGTTTA 1671
|||||||||||||||||| | ||||||||| |||||| || || ||| || ||||||||
Sbjct 1389 AGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACATGGACGGAAGTGC-GATGTTTA 1447
Query 1672 CAGCTTTGGACT-CGTTTTATGGGAAATGGTAGCTGGAGCAATCCCGTATGAGGACATGA 1730
|| |||||||| | |||||||||||||||||||||||||| | || |||||||| ||||
Sbjct 1448 TAGTTTTGGACTTC-TTTTATGGGAAATGGTAGCTGGAGCACTTCCATATGAGGAGATGA 1506
Query 1731 A-TC--CT-ATTCAAGCTGCTTTTGCAGTCGTACACAAGAACATTAGGCCAGCTATCCCG 1786
| | || | ||| ||| | ||||| || ||||||| |||||||||| ||| |||
Sbjct 1507 AATTTGCTGAA-CAAATTGCCTACGCAGTTATATACAAGAAAATTAGGCCAGTTATACCG 1565
Query 1787 G-GAGATTGTCCAGTAGCCATGAAAGCTCTGATAGAGC-AGTGTTGGTCGGTTGCAC-CG 1843
| |||||||||| |||||||||| ||||| |||| | |||||||| | ||| |
Sbjct 1566 ACG-GATTGTCCAGCGGCCATGAAAGAGCTGATCGAGCGA-TGTTGGTCA-TCGCAAACA 1622
Query 1844 GATAAGAGACCAGAGTTCTGGCAGATAGTGAAAGTGCTTG-AACAGTTT 1891
|| |||||||| || ||||||||||| || |||||| ||| |||| |||
Sbjct 1623 GACAAGAGACCGGAATTCTGGCAGATTGTCAAAGTG-TTGGAACA-TTT 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112800624615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5