BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496019
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58960.1 | Symbols: GIL1 | Plant protein of unknown function... 2712 0.0
> AT5G58960.1 | Symbols: GIL1 | Plant protein of unknown function
(DUF641) | chr5:23805717-23808478 FORWARD LENGTH=1880
Length=1880
Score = 2712 bits (1468), Expect = 0.0
Identities = 1736/1863 (93%), Gaps = 27/1863 (1%)
Strand=Plus/Plus
Query 1 TATATTAGAGTTCATCTC-TTTGGTTCTaaag-aa-agaga-a-agagagag-gaagaga 54
|||||| ||||||||||| |||| |||||||| || ||||| | |||||||| |||||||
Sbjct 21 TATATTGGAGTTCATCTCTTTTGTTTCTAAAGAAAGAGAGAGAGAGAGAGAGAGAAGAGA 80
Query 55 aaaTGTTGCCAGGCATTCTTTTATGCTCAGTTAATCCTAGGAATCACAGCAAAAAGAAGA 114
| |||||||||||||| || ||||||||| ||||||| |||||||||||||||||||| |
Sbjct 81 AGATGTTGCCAGGCATACTATTATGCTCACTTAATCCCAGGAATCACAGCAAAAAGAAAA 140
Query 115 AGATTGATCGAGAGAGCTTAGAAACTGAGCCCAAAGACATTGACTACTGGCGCTCTGTTC 174
||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 AGAGTGAGCGAGAGAGCTTAGAAACTGAGCCCAAAGACATTGACTACTGGTACTCTGTTC 200
Query 175 AATTCAATCGAGATCCTCCGAGATTTGCTCTCAAATCAGAGAACACCAATCACCATTCCC 234
||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||
Sbjct 201 AATTCAATCGAGATCCTCCGAGATTCGCTCTCAAATCTGAGAATAACAATCACCATTCCC 260
Query 235 GCAG---GAGCGGCGGCGAATTTGGGAAGACGAAGAAGCGAGGAGAAATGGCGAACAAGG 291
|||| |||||||||||| ||| | |||| ||||||| |||||||||||||||||||||
Sbjct 261 GCAGTAAGAGCGGCGGCGATTTTTGCAAGAAGAAGAAGAGAGGAGAAATGGCGAACAAGG 320
Query 292 TTTCTAACTTCTCGGATCTGATTCAACGAGTTACTGCGTCTTGTTTGTTGCATCCGCTCG 351
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 321 TTTCTAACTTCTCGGATCTGATTCAACGAGTTACGGCGTCTTGTTTGTTGCATCCACTCT 380
Query 352 CCGCCGGCCGGCAAGATCTCGCTG-GAAACCGCCGGGAAGAGTACGATACTGAAGAAGAG 410
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 381 CCGCCGGCCGGCAAGATCTCGCTGTG-AATCGCCGGGAAGAGTACGATACTGAAGAAGAG 439
Query 411 GAGAATGAGGGGGAGGGAGAGATTCAGTACGAAGACGCATTGGAGAAGGAGAATGGTAAA 470
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GAGAATGAGGAGGAAGGTGAGATTCAGTACGAAGACGCATTGGAGAAGGAGAATGGTAAA 499
Query 471 GATGAGACTATTAGGGCTAAGACCGGAAGGAGCGGCGTGAGTGTTGAGGCGTTGCAGGAG 530
|||||||| ||||||||||||| |||||||| ||| |||||||||||| || ||||||||
Sbjct 500 GATGAGACAATTAGGGCTAAGAACGGAAGGAACGGTGTGAGTGTTGAGACGGTGCAGGAG 559
Query 531 ATGGAGATGGTGATGGAGC-AAGTTTTCACAGCGGCGGCTGCTATGAAGAGAGCTTACGT 589
||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||
Sbjct 560 ATGGAGATGGTGATGGA-CGAAGTTTTCACGGCGGCTGCTGCTATGAAGAGAGCTTACGT 618
Query 590 GGCGCTTCAGGAAGCGCATTCGCCGTGGGATCCGGAGAAGATGCACGATGCTGATATGGC 649
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TGCGCTTCAGGAAGCTCATTCGCCGTGGGATCCGGAGAAGATGCACGATGCTGATATGGC 678
Query 650 CATGGTGGCTGAGCTGAGAAGGATTGGCTCGTTGAGGGAAAGATTCAGGAGGATGAGAGG 709
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 679 GATGGTGGCTGAGCTGAGAAGGATTGGTTCATTGAGGGAAAGATTCAGGAGGATGAGAGG 738
Query 710 TACCGGAAGTGGTGGTCGGCGGAAAAACGACGCCGGAAGAGGGATGCTGAGAGAGGCGGT 769
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 739 TACCGGAAGTGGTGGTCGAAGGAAAAACGACGCCGGAAGAGGAATGCTGAGAGAGGCCGT 798
Query 770 GGCGCCGTACGAGGCCGTTGTGAAGGAGCTGAAGAAAGAAGTGAAGGTGAAAGATACTGA 829
|||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 799 GGCGCCTTATGAGGCGGTTGTGAAGGAGCTGAAGAAAGAAGTGAAAGTGAAAGATACTGA 858
Query 830 GATTGAGAATCTGAAGGAGAAACTCAAAGTGGCTAGTTCTATGGCCAACGGTAACGGAGG 889
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 859 GATTGAGAATCTGAAGGAGAAAGTCAAAGTGGC---TTCTATGGCCAACGGTAACGGAGG 915
Query 890 CAAGAAACACCGATTGCTTTCAAGCCGGAAAGTTAACTGCACCACACAGATCGCTGTATC 949
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 916 CAAGAAACACCGATTGCTTTCAAGCCGGAAAGTTAACTGTACCACACAGATTGCTGTGTC 975
Query 950 TCCTGTGCCGGAGTTATTCGAGATGACTATGATTCAGGTGAAAGAAGCATCAAAGTCTTT 1009
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 976 TCCGGTGCCGGAGTTATTTGAGATGACAATGATTCAGGTGAAAGAAGCATCAAAGTCTTT 1035
Query 1010 CACAGGGATTCTATTGTCACTGATGCGAGCTGCGCATTGGGACATTGCAGCGGCTGTTCG 1069
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1036 CACAGGGATTCTATTGTCACTAATGCGAGCTGCACATTGGGACATTGCAGCGGCTGTTCG 1095
Query 1070 ATCCATTGAAGCCGCTTCAGCTTCATCAGACGGAATGTCGGCTTCTTTGTTTGCATCCTC 1129
||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 1096 ATCCATTGAAGCCGCTTCAGCTTCATCCGACGGAATGTCTGCTTCTTCGTTTGCATCCTC 1155
Query 1130 GGTGCAGTCCTCTGTCCCGAACCAGCACGCCAAATTTGCTCTTGAGTCTTACATCTGTCG 1189
||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1156 GGTTCAGTCATCTGTCCCGAACCAGCACGCGAAGTTTGCTCTTGAGTCTTACATCTGTAG 1215
Query 1190 GAAAATCTTCCAAGGATTCGATCACGAAACGTTTTACATGGATGGAAGCTTATCTTCTCT 1249
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GAAAATCTTCCAAGGATTTGATCACGAAACGTTTTACATGGATGGAAGCTTATCTTCTCT 1275
Query 1250 TATCAACCCGGATCAATACCGCCGTGACTGCTTCGCGCAGTTCAAAGATATGAAAGCAAT 1309
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1276 TATCAACCCGGATCAGTACCGTCGTGACTGCTTTGCGCAGTTCAAAGATATGAAAGCAAT 1335
Query 1310 GGATCCTATGGAGTTGCTAGGGATCTTACCGACTTGCCATTTTGGTAAGTTCTGCTCAAA 1369
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1336 GGATCCTATGGAGTTGCTAGGGATCTTACCAACTTGCCATTTTGGTAAATTCTGCTCGAA 1395
Query 1370 GAAGTATCTTTCGATCATTCACCACAAAATGGAAGAGTCGTTGTTCGGCGACTCGGAACA 1429
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1396 GAAGTACCTTTCGATCATTCACCAAAAAATGGAAGAGTCGTTGTTCGGGGACTCGGAACA 1455
Query 1430 GCGGGAGCTGGTTCTAGCCGGTAACCACCCAAGAAGTCAGTTCTATGGAGAGTTCTTGGG 1489
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 GCGGGAGTTGGTTGTAGCCGGTAACCACCCAAGAAGTCAGTTCTATGGAGAGTTCTTGGG 1515
Query 1490 ATTAGCTAAAGCGGTCTGGCTGCTTCATCTTTTGGCGTTCTCGCTCGATCCATCCCCAAG 1549
|||||||||| ||||||||||||||||| |||| ||||||||||| |||||||| ||
Sbjct 1516 GCTAGCTAAAGCAGTCTGGCTGCTTCATCTCCTGGCATTCTCGCTCGACCCATCCCCGAG 1575
Query 1550 TCACTTTGAAGCAAACCGAGGAGCTGAGTTTCACTCTCAGTACATGGAGAGCGTCGTGAA 1609
|||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1576 TCACTTTGAAGCAAACAGAGGAGCCGAGTTTCACTCTCAGTACATGGAGAGTGTCGTGAG 1635
Query 1610 GTTCTCGGATGGCCGTGTTCCTGTGGGTCAAGTTGTTGGGTTTCCTGTTTGTCCAGGATT 1669
||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1636 GTTTTCGGATGGCCGTGTTCCTGCGGGTCAAGTTGTTGGATTTCCTGTTTGTCCAGGATT 1695
Query 1670 CAAGCTTAGCCATCAAGGGAAAGGATCAATCATCAAATCCAGAGTTTACTTGGTTCCAAG 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 CAAGCTTAGCCATCAAGGGAAAGGATCAATCATCAAATCCAGAGTTTACTTGGTTCCAAG 1755
Query 1730 GGCTTAAAACGGTTTTCATTGAGTTCACTGTTTCTTAGGAATATATTATGGC---GT-TG 1785
||||||||| ||||| | ||||||||||||||||||||||||| |||||| | || ||
Sbjct 1756 GGCTTAAAAAGGTTT-CTTTGAGTTCACTGTTTCTTAGGAATACATTATGTCCTCGTGTG 1814
Query 1786 T-GTT---G--TTTAAGACAATCTAGCTTTGGAAAAATCTTGAAATAAAGAGATCGTTCA 1839
| ||| | |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1815 TTGTTTAAGACTTTAAGACAATCTAGCTTCGGAAAAATCTTGAAATAAAGAGACCGTTCG 1874
Query 1840 TAT 1842
|||
Sbjct 1875 TAT 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5