BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496022
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58970.1 | Symbols: ATUCP2, UCP2 | uncoupling protein 2 | ch... 1701 0.0
> AT5G58970.1 | Symbols: ATUCP2, UCP2 | uncoupling protein 2 |
chr5:23808461-23811258 REVERSE LENGTH=1339
Length=1339
Score = 1701 bits (921), Expect = 0.0
Identities = 1179/1294 (91%), Gaps = 56/1294 (4%)
Strand=Plus/Plus
Query 1 GAGAGACTGTGTACTTGTTCTGAATTCGTTACGCC---ATTAAATCTCGATCTCACTTTT 57
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GAGAGACTCTGTACTTGTTCTGAATTCGTTACGCCATTATTAAATCTCGATCTCACTTTT 60
Query 58 CTTTATTACTACTCCTAATCATTAT-ATTGTTGAGAAACCCTTTTTAAGATT--ATTATA 114
||| |||||||||||||| | ||| || ||||||||||| |||||||||| || | |
Sbjct 61 CTTCATTACTACTCCTAAAAACTATAATCATTGAGAAACCCATTTTAAGATTACATCA-A 119
Query 115 TCAATCAT--C-G-T----CGAAATTTTAG---C-T-TC-----tt----ttttttt-tt 151
|| ||||| | | | |||| | || | | || || ||||||| ||
Sbjct 120 TC-ATCATCGCTGTTAGAGAGAAACTGGAGCAACTTCTCAAATTTTAGCCTTTTTTTGTT 178
Query 152 tttGCATTTAGCCCAATCGGTGCTTCCCCAGATTTCGCTTATCTTGTTCCCATAGCATAA 211
||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 179 TTTGCATTTTGCCTAATCGGTGCTTCTCCAGATTTCGCTTATCTTGTTCCTATAGCATAA 238
Query 212 CAATGGCCGATTTCAAACCCAGGATCGAGATTTCCTTCCTTGAAACCTTCATTTGTAGCG 271
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 239 CAATGGCGGATTTCAAACCAAGGATCGAGATTTCGTTCCTTGAAACCTTCATTTGCAGCG 298
Query 272 CTTTCGCTGCTTGTTTTGCAGAGTTATGTACTATACCATTGGACACTGCTAAAGTAAGGC 331
||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| || |
Sbjct 299 CTTTCGCTGCTTGTTTTGCTGAGTTATGTACTATACCGTTGGACACAGCCAAAGTTAGAC 358
Query 332 TTCAGCTTCAAAGAAAGATTCCTACAGGAGATGGTGAGAATTTGCCTAAGTATAGAGGTT 391
|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
Sbjct 359 TTCAGCTTCAAAGAAAGATTCCCACTGGAGATGGTGAGAATTTGCCCAAGTATAGAGGAT 418
Query 392 CAATTGGTACTCTAGCTACCATAGCTAGAGAAGAAGGTATTTCGGGACTTTGGAAAGGTG 451
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 419 CAATTGGTACTCTAGCTACCATAGCTAGAGAAGAAGGTATTTCAGGTCTTTGGAAAGGTG 478
Query 452 TGATTGCGGGACTGCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGC 511
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTATTGCAGGACTTCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGC 538
Query 512 CTGTCAAGACATTTTTGGTTGGAAGTGACTTTATTGGTGATATTCCATTATATCAAAAGA 571
|||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 539 CTGTGAAGACACTTTTGGTTGGAAGTGACTTTATTGGCGATATTCCTTTATATCAAAAGA 598
Query 572 TTCTTGCAGCTTTGTTAACCGGAGCTATAGCTATTATTGTAGCTAATCCAACTGATCTTG 631
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCTTGCAGCTTTGTTAACTGGAGCTATAGCTATTATTGTAGCTAATCCAACTGATCTTG 658
Query 632 TTAAAGTTCGGCTTCAGTCAGAAGGAAAATTACCGGCTGGGGTTCCTAGGCGTTATGCAG 691
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TTAAAGTTCGGCTTCAATCAGAAGGAAAGTTACCGGCTGGGGTTCCTAGGCGTTATGCAG 718
Query 692 GAGCTGTAGACGCTTATTTCACAATAGTTAAGCTGGAAGGAGTTAGTGCGCTATGGACTG 751
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 719 GAGCTGTAGACGCTTATTTCACCATTGTGAAGCTGGAAGGAGTTAGTGCGCTATGGACTG 778
Query 752 GACTTGGTCCCAACATTGCCCGGAATGCTATTGTAAATGCTGCAGAGTTAGCTAGTTATG 811
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GACTTGGTCCCAATATTGCCCGGAATGCTATTGTAAATGCTGCAGAGTTAGCTAGTTATG 838
Query 812 ATCAAATAAAGGAGACAATTATGAAAATTCCATTCTTCAGAGACAGTGTTTTGACTCATC 871
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 839 ATCAAATAAAGGAGACAATTATGAAAATTCCGTTCTTCAGAGACAGTGTTTTAACTCATC 898
Query 872 TACTAGCTGGTTTAGCTGCAGGCTTCTTCGCTGTCTGCATTGGTTCTCCAATTGATGTGG 931
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 TACTAGCTGGTTTAGCTGCAGGCTTCTTCGCTGTCTGCATCGGTTCTCCAATTGATGTGG 958
Query 932 TGAAATCTAGAATGATGGGAGACTCTACTTACCGAAACACAGTCGATTGCTTCATCAAAA 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGAAATCTAGAATGATGGGAGACTCTACTTACCGAAACACAGTCGATTGCTTCATCAAAA 1018
Query 992 CCATGAAGACCGAGGGGATTATGGCATTCTACAAAGGATTTCTCCCGAATTTTACACGGC 1051
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CGATGAAGACCGAGGGGATTATGGCATTCTACAAAGGATTTCTCCCGAATTTTACACGGC 1078
Query 1052 TAGGAACCTGGAACGCCATTATGTTCCTCACACTAGAACAAGTGAAAAAAGTGTTTCTAA 1111
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1079 TAGGAACCTGGAATGCCATTATGTTCCTCACATTAGAACAAGTGAAAAAAGTGTTTCTAA 1138
Query 1112 GAGAAGTCCTGTACGATTGATT-TCGAGATCCCTCGTAGAAAAACCATACCTTATTACAT 1170
|||||||| ||||||||||||| || |||||||| || ||||| ||||||||||||||||
Sbjct 1139 GAGAAGTCTTGTACGATTGATTCTC-AGATCCCTAGTCGAAAA-CCATACCTTATTACAT 1196
Query 1171 AAT-------A-A----TT-G--TT---AGAATTTAAAACATATA--CTT-CTATGTTAT 1209
||| | | || | || |||||| |||||||||| ||| |||||||||
Sbjct 1197 AATCCCTTCTATAAAACTTTGAATTGTTAGAATT-AAAACATATATACTTTCTATGTTAT 1255
Query 1210 GTGAGCTTTGTTATTTAGCTTAATATAAAAACAT 1243
|||||||||||||||||| ||| |||| ||||||
Sbjct 1256 GTGAGCTTTGTTATTTAGATTAGTATAGAAACAT 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5