BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496025
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1057 0.0
AT5G58990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 857 0.0
> AT5G52370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G58990.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:21260278-21261287 REVERSE LENGTH=793
Length=793
Score = 1057 bits (572), Expect = 0.0
Identities = 734/806 (91%), Gaps = 36/806 (4%)
Strand=Plus/Plus
Query 1 CTCTTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGCAAC---A-agagagagagaga- 55
||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 10 CTCCTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGAAACTTGAGAGAGAGAGAGAGAG 69
Query 56 g-agaga--gaTACAATGGCGATGACTCTTATGAAGAGAGCAATCTCTAGAACCGAAACC 112
| ||||| || || ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 70 GAAGAGAGCGACACTATGGCGATGACACTTATTAACAGAGCAATCTCTAGAACCGAAACC 129
Query 113 GTCGGTGCTTTCAGACTCTCGCTTAATCTCCTAAGGAATTTCTCTGCGGCGCCGGCGAGT 172
|| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 130 GTTGGTGCTTTCAGACTCTCGCTTAATCTCTTAAGAAATTTCTCTGCGGCGCCGGCGAGT 189
Query 173 GAAAACCCTAGCTCCGATTCGAAG-AAACCCAAACGAAGAAAGAAGAAGAATTTAATCGA 231
||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||
Sbjct 190 GAAAACCCTAGCTCCGATTCG-AGTAAACCGAAACGAAGAAAGAAGAAGAACTTAATCGA 248
Query 232 AGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCACTGGAA 291
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 249 AGTTGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCATTGGAA 308
Query 292 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTACAAGGATGGTAGACATGGAAAAGC 351
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 309 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTATAAGGATGGTAGACATGGAAAAGC 368
Query 352 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAGCTCCAAAGAAGATAAGCGG 411
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 369 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCAGAAGCTCCAAAGAAGATAAGCGG 428
Query 412 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCAACAAA 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 429 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCTACAAC 488
Query 472 CTCTGCAACCGCTGCTGATGTCCAAGCTGCCTGAACTGTTGTGGGTACTTCTCCAT-ATA 530
|||||| | | ||||||||||||||||| ||||||||||||||| | || | |
Sbjct 489 CTCTGC------T-C--ATGTCCAAGCTGCCTGATCTGTTGTGGGTACTTGTTGATCA-A 538
Query 531 TCTGTTTGCGGTTTCTTTTTATTG-G--GAAGATACAGTTGTTGTGACTTGATAGCTTCT 587
|||||||||| |||||||| |||| | ||||||||||||||||||||||||||| ||||
Sbjct 539 TCTGTTTGCGCTTTCTTTT-ATTGAGAAGAAGATACAGTTGTTGTGACTTGATAGTTTCT 597
Query 588 TTGAATTCGTCGATAGCTGTGTAGGAAATGATCCATAATCTCGGATGATGATCGGTTGTT 647
|||||||||| ||||||| |||||||||| | || | ||||||||||| ||||||
Sbjct 598 TTGAATTCGTTGATAGCTTTGTAGGAAAT---C--TA--C--GGATGATGATCTGTTGTT 648
Query 648 CGTTCTTCTTGTTAAGACTTTACACTTCTTGAGTTG-GATTTTGCTGGGTTTTGCTACTA 706
| |||||||||||||||||||||| ||| |||||| ||||||| |||| || |||||||
Sbjct 649 CCTTCTTCTTGTTAAGACTTTACATTTCCTGAGTTATGATTTTG-TGGGGTTAGCTACTA 707
Query 707 TTAAGTATGAACTTGTTTTGTAGGAGATCTTCTGGTTTTAAACATGTAATAAACGACCTC 766
||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 708 TTACGTATGAACTTGATTTGTAGGAGGTCTTCTGGTTTTAAACATGTAATAAACGACCTC 767
Query 767 AATTACGAGTGGCAGGTTTTAGTTTC 792
||||||||||||||||||||||||||
Sbjct 768 AATTACGAGTGGCAGGTTTTAGTTTC 793
> AT5G58990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G52370.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:23814993-23816143 FORWARD LENGTH=806
Length=806
Score = 857 bits (464), Expect = 0.0
Identities = 696/796 (87%), Gaps = 64/796 (8%)
Strand=Plus/Plus
Query 51 agagagagagagaTACAATGGCGATGACTCTTATGAAGAGAGCAATCTCTAGAACCGAAA 110
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 19 AGAGAGAGAGCGATACAATGGCGATGACACTTATGAACAGAGCAATCTCTAGAACCGAAA 78
Query 111 CCGTCGGTGCTTTCAGACTCTCGCTTAATCTCCTAAGGAATTTCTCT--------G-CGG 161
| || ||||||||||| |||||||||| |||| |||| ||||||||| | |||
Sbjct 79 CTGTTGGTGCTTTCAGTCTCTCGCTTAGTCTCTTAAGAAATTTCTCTGCGGCGCCGTCGG 138
Query 162 C-G--------CCGGCGAGTGAAAACCCTAGCTCCGATTCGAAGAAACCCAAACGAAGAA 212
| | |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 139 CGGCATCTACTCCGGCGAGTGAAAACCCTAGCTCCGATTCGAATAAACCTAAACGAAGAA 198
Query 213 AGAAGAAGAATTTAATCGAAGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATA 272
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AGAAGAAAAACTTAATCGAAGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATA 258
Query 273 TGGCTAAAGCTCACTGGAATGGAATCTCTTATGAAATCACTAAGATCAATCTCTACAAGG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 259 TGGCTAAAGCTCACTGGAATGGAATCTCTTATGAAATCACTAAGATCAATCTCTATAAGG 318
Query 333 ATGGTAGACATGGAAAAGCTTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ATGGTAGACATGGAAAAGCTTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAG 378
Query 393 CTCCAAAGAAGATAAGCGGAGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAA 452
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 379 CTCCAAAGAAGATAAGCGGAGTTCACAAACGTTGTTGGAAGTATATCCCAAACCTGTCAA 438
Query 453 AGACTGCTCCTGCAACAA--ACT-CTG-----CAACCGCTGC-TGAT--GTCCAAGCTGC 501
||||| |||||||||||| ||| ||| ||| ||||| |||| || | || |
Sbjct 439 AGACTACTCCTGCAACAACCACTGCTGATGTTCAA--GCTGCCTGATCTGTTTA--CTTC 494
Query 502 CTGAACTGTTGTGGGTACTTCTCCATATATCTGTTTGCGGTTTCTTTTTATTGGGAAGA- 560
| | |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 495 C--AT-TGTTGTGGGTACTTCTTGATCTATCTGTTTGCGGTTTCTTTTTATTGGGAAGAA 551
Query 561 --TACAGTTGTTGTGACTTGATAGCTTCTTTGAATTCGTCGATAGCTGTGTAGGAAATGA 618
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 552 GATACAGTTGTTGTGACTTGATAGTTTCTTTGAATTCGTCGATAGCTTTGTAGGAAATGA 611
Query 619 TCCATAATCT-CGGATGATGATCG-GTTGTTCGTTCTTCTTGTTAAGACTTTACACTTCT 676
|||||||||| |||||||||| || || |||||| ||||||||||||||||||||||||
Sbjct 612 TCCATAATCTACGGATGATGACCGAGTA-TTCGTTTTTCTTGTTAAGACTTTACACTTCT 670
Query 677 TGAGTTG-GATTTTGCTG-G---G--T---T-----T--TGCT-A-CTA-T-TAA-GTAT 714
|||||| ||||||| || | | | | | || | | ||| | ||| || |
Sbjct 671 TGAGTTATGATTTTGATGAGCCAGCATCCCTAAGCCTAGTGTTTAGCTACTATAAAGTTT 730
Query 715 GAACTTGTTTTGTAGGAGATCTTCTGGTTTTAAACATGTAATAAACGACCTCAATTACGA 774
|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 731 GAACTTGTTTTGTAGGAGATCTGCTGGTTTTAAACATGTAATAAATGACCTCAACTACGA 790
Query 775 GTGGCAGGTTTTAGTT 790
|||||||||||||||
Sbjct 791 TTGGCAGGTTTTAGTT 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5