BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496025 Length=792 Score E Sequences producing significant alignments: (Bits) Value AT5G52370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1057 0.0 AT5G58990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 857 0.0 > AT5G52370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21260278-21261287 REVERSE LENGTH=793 Length=793 Score = 1057 bits (572), Expect = 0.0 Identities = 734/806 (91%), Gaps = 36/806 (4%) Strand=Plus/Plus Query 1 CTCTTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGCAAC---A-agagagagagaga- 55 ||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||| Sbjct 10 CTCCTCAACCTCAGTCGCCGATCTTCAACAGTGGCTGAAACTTGAGAGAGAGAGAGAGAG 69 Query 56 g-agaga--gaTACAATGGCGATGACTCTTATGAAGAGAGCAATCTCTAGAACCGAAACC 112 | ||||| || || ||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 70 GAAGAGAGCGACACTATGGCGATGACACTTATTAACAGAGCAATCTCTAGAACCGAAACC 129 Query 113 GTCGGTGCTTTCAGACTCTCGCTTAATCTCCTAAGGAATTTCTCTGCGGCGCCGGCGAGT 172 || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 130 GTTGGTGCTTTCAGACTCTCGCTTAATCTCTTAAGAAATTTCTCTGCGGCGCCGGCGAGT 189 Query 173 GAAAACCCTAGCTCCGATTCGAAG-AAACCCAAACGAAGAAAGAAGAAGAATTTAATCGA 231 ||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 190 GAAAACCCTAGCTCCGATTCG-AGTAAACCGAAACGAAGAAAGAAGAAGAACTTAATCGA 248 Query 232 AGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCACTGGAA 291 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 249 AGTTGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATATGGCTAAAGCTCATTGGAA 308 Query 292 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTACAAGGATGGTAGACATGGAAAAGC 351 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 309 TGGAATCTCTTATGAAATCACTAAGATCAATCTCTATAAGGATGGTAGACATGGAAAAGC 368 Query 352 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAGCTCCAAAGAAGATAAGCGG 411 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 369 TTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCAGAAGCTCCAAAGAAGATAAGCGG 428 Query 412 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCAACAAA 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 429 AGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAAAGACTGCTCCTGCTACAAC 488 Query 472 CTCTGCAACCGCTGCTGATGTCCAAGCTGCCTGAACTGTTGTGGGTACTTCTCCAT-ATA 530 |||||| | | ||||||||||||||||| ||||||||||||||| | || | | Sbjct 489 CTCTGC------T-C--ATGTCCAAGCTGCCTGATCTGTTGTGGGTACTTGTTGATCA-A 538 Query 531 TCTGTTTGCGGTTTCTTTTTATTG-G--GAAGATACAGTTGTTGTGACTTGATAGCTTCT 587 |||||||||| |||||||| |||| | ||||||||||||||||||||||||||| |||| Sbjct 539 TCTGTTTGCGCTTTCTTTT-ATTGAGAAGAAGATACAGTTGTTGTGACTTGATAGTTTCT 597 Query 588 TTGAATTCGTCGATAGCTGTGTAGGAAATGATCCATAATCTCGGATGATGATCGGTTGTT 647 |||||||||| ||||||| |||||||||| | || | ||||||||||| |||||| Sbjct 598 TTGAATTCGTTGATAGCTTTGTAGGAAAT---C--TA--C--GGATGATGATCTGTTGTT 648 Query 648 CGTTCTTCTTGTTAAGACTTTACACTTCTTGAGTTG-GATTTTGCTGGGTTTTGCTACTA 706 | |||||||||||||||||||||| ||| |||||| ||||||| |||| || ||||||| Sbjct 649 CCTTCTTCTTGTTAAGACTTTACATTTCCTGAGTTATGATTTTG-TGGGGTTAGCTACTA 707 Query 707 TTAAGTATGAACTTGTTTTGTAGGAGATCTTCTGGTTTTAAACATGTAATAAACGACCTC 766 ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 708 TTACGTATGAACTTGATTTGTAGGAGGTCTTCTGGTTTTAAACATGTAATAAACGACCTC 767 Query 767 AATTACGAGTGGCAGGTTTTAGTTTC 792 |||||||||||||||||||||||||| Sbjct 768 AATTACGAGTGGCAGGTTTTAGTTTC 793 > AT5G58990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23814993-23816143 FORWARD LENGTH=806 Length=806 Score = 857 bits (464), Expect = 0.0 Identities = 696/796 (87%), Gaps = 64/796 (8%) Strand=Plus/Plus Query 51 agagagagagagaTACAATGGCGATGACTCTTATGAAGAGAGCAATCTCTAGAACCGAAA 110 |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 19 AGAGAGAGAGCGATACAATGGCGATGACACTTATGAACAGAGCAATCTCTAGAACCGAAA 78 Query 111 CCGTCGGTGCTTTCAGACTCTCGCTTAATCTCCTAAGGAATTTCTCT--------G-CGG 161 | || ||||||||||| |||||||||| |||| |||| ||||||||| | ||| Sbjct 79 CTGTTGGTGCTTTCAGTCTCTCGCTTAGTCTCTTAAGAAATTTCTCTGCGGCGCCGTCGG 138 Query 162 C-G--------CCGGCGAGTGAAAACCCTAGCTCCGATTCGAAGAAACCCAAACGAAGAA 212 | | |||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 139 CGGCATCTACTCCGGCGAGTGAAAACCCTAGCTCCGATTCGAATAAACCTAAACGAAGAA 198 Query 213 AGAAGAAGAATTTAATCGAAGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATA 272 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 AGAAGAAAAACTTAATCGAAGTCGCTCAGTTCTTACCTAATTGGGGAATCGGATACCATA 258 Query 273 TGGCTAAAGCTCACTGGAATGGAATCTCTTATGAAATCACTAAGATCAATCTCTACAAGG 332 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 259 TGGCTAAAGCTCACTGGAATGGAATCTCTTATGAAATCACTAAGATCAATCTCTATAAGG 318 Query 333 ATGGTAGACATGGAAAAGCTTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAG 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 ATGGTAGACATGGAAAAGCTTGGGGAATTGTTCACAAAGATGGATTGCGAGCTGCGGAAG 378 Query 393 CTCCAAAGAAGATAAGCGGAGTTCACAAACGGTGTTGGAAGTATATCCCAAACCTGTCAA 452 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 379 CTCCAAAGAAGATAAGCGGAGTTCACAAACGTTGTTGGAAGTATATCCCAAACCTGTCAA 438 Query 453 AGACTGCTCCTGCAACAA--ACT-CTG-----CAACCGCTGC-TGAT--GTCCAAGCTGC 501 ||||| |||||||||||| ||| ||| ||| ||||| |||| || | || | Sbjct 439 AGACTACTCCTGCAACAACCACTGCTGATGTTCAA--GCTGCCTGATCTGTTTA--CTTC 494 Query 502 CTGAACTGTTGTGGGTACTTCTCCATATATCTGTTTGCGGTTTCTTTTTATTGGGAAGA- 560 | | |||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 495 C--AT-TGTTGTGGGTACTTCTTGATCTATCTGTTTGCGGTTTCTTTTTATTGGGAAGAA 551 Query 561 --TACAGTTGTTGTGACTTGATAGCTTCTTTGAATTCGTCGATAGCTGTGTAGGAAATGA 618 |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 552 GATACAGTTGTTGTGACTTGATAGTTTCTTTGAATTCGTCGATAGCTTTGTAGGAAATGA 611 Query 619 TCCATAATCT-CGGATGATGATCG-GTTGTTCGTTCTTCTTGTTAAGACTTTACACTTCT 676 |||||||||| |||||||||| || || |||||| |||||||||||||||||||||||| Sbjct 612 TCCATAATCTACGGATGATGACCGAGTA-TTCGTTTTTCTTGTTAAGACTTTACACTTCT 670 Query 677 TGAGTTG-GATTTTGCTG-G---G--T---T-----T--TGCT-A-CTA-T-TAA-GTAT 714 |||||| ||||||| || | | | | | || | | ||| | ||| || | Sbjct 671 TGAGTTATGATTTTGATGAGCCAGCATCCCTAAGCCTAGTGTTTAGCTACTATAAAGTTT 730 Query 715 GAACTTGTTTTGTAGGAGATCTTCTGGTTTTAAACATGTAATAAACGACCTCAATTACGA 774 |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 731 GAACTTGTTTTGTAGGAGATCTGCTGGTTTTAAACATGTAATAAATGACCTCAACTACGA 790 Query 775 GTGGCAGGTTTTAGTT 790 ||||||||||||||| Sbjct 791 TTGGCAGGTTTTAGTT 806 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38529590749 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5