BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496027
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1229 0.0
AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 75.0 1e-12
> AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:23818184-23820237 FORWARD LENGTH=1354
Length=1354
Score = 1229 bits (665), Expect = 0.0
Identities = 820/887 (92%), Gaps = 41/887 (5%)
Strand=Plus/Plus
Query 1 aaaaaaaTGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTAGAGACT-- 58
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 434 AAAAAAATGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTACAGACTCG 493
Query 59 -CGCCGTACTCCGTCGAAATTAGCGTCGACGGTGACTCCTCCGACTTGGATTCTTTGTCT 117
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 494 CCGCCGTACTCCGTCGAAATTAGCATCGACGGTGACTCCTCCGACTGGGATTCTTTGTCT 553
Query 118 GAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAAAAGGTACATTCCTGTGGT 177
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 554 CAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAACAGCTACATTCCGGTGGT 613
Query 178 aagaagaggagaacaaggaggaggaagagga-g--gaagaagaagaagaagaaaggtgga 234
|||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 614 AAGAAGAGGAGAACTAGGAGGAGAAAGAGGAGGAAGAAGAAGAAGAAGAAGAAAGGTGGA 673
Query 235 agagaTTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAaagaagctgaagaagaagaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 674 AGAGATTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAAAGAAGCTGAAGATGAAGAT 733
Query 295 gaagaagaagaaga--a----gatgat--t----ctgatgaagat---gaagatgaagaa 339
|||||||||||||| | |||||| | ||| |||||| ||||| ||||||
Sbjct 734 GAAGAAGAAGAAGATGATTCTGATGATGATGAAGATGAAGAAGATGAAGAAGAAGAAGAA 793
Query 340 gaagaagaagaag-aG--TATTATGGTTTACCTTTGCAATTAGGTTGCTCTTGTAAAGGT 396
||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 794 GAAGAAGAAGAAGAAGAATATTATGGTTTGCCTTTGCAATTAGGTTGCTCTTGTAAAGGT 853
Query 397 GATTTGGGTGTAGCTCATAGTAAGTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACATG 456
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 854 GATTTGGGTGTTGCTCATAGTAAGTGTGCTGAGACTTGGTTTAAGATCAAAGGAAACATG 913
Query 457 ACATGTGAGATATGCGGCACAATGGCTCTAAACGTGGCTGGTGAACAATCAAATCCGGAG 516
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 914 ACATGTGAGATATGCGGCGCAATGGCTCTAAACGTGGCTGGTGAACAATCTAATCCGGAG 973
Query 517 AGCACTGCCTCTACCCACTCACAAGCAGCTGCGGCAGGACAATCTCAAACTCAGACAGAG 576
|||||||| ||||| || |||||||||||||| | |||||||||| |||||||||||||
Sbjct 974 AGCACTGCTTCTACACATTCACAAGCAGCTGC-G--GGACAATCTCTAACTCAGACAGAG 1030
Query 577 CCACGGGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 636
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CCACGAGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 1090
Query 637 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCATCTC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCATCTC 1150
Query 697 TCTCTCT-T-TC------------GCCCACCCGCACGCGCTCACTCTTCTCCTGTTCTTG 742
||||||| | || ||||||||||||| ||||||||||||||||||||||
Sbjct 1151 TCTCTCTCTCTCTCTCTCTCTTTCGCCCACCCGCACGAGCTCACTCTTCTCCTGTTCTTG 1210
Query 743 AGCCGCTTGCTATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 802
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AGCCGCTTGCAATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 1270
Query 803 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 849
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 1317
> AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:1755766-1757085 FORWARD LENGTH=1019
Length=1019
Score = 75.0 bits (40), Expect = 1e-12
Identities = 62/72 (86%), Gaps = 4/72 (6%)
Strand=Plus/Plus
Query 385 TCTTGTAAAGGTGATTTGGGTG-TAGCTCATAGTA-AGTGTGCTGAGACTTGGTTCAAGA 442
|||||||||| |||| | | || | ||||||| | | ||||||||||||||||||||||
Sbjct 448 TCTTGTAAAGCTGATCTCGCTGCT-GCTCATA-AACACTGTGCTGAGACTTGGTTCAAGA 505
Query 443 TCAAAGGAAACA 454
||||||||||||
Sbjct 506 TCAAAGGAAACA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5