BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496027 Length=849 Score E Sequences producing significant alignments: (Bits) Value AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1229 0.0 AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 75.0 1e-12 > AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:23818184-23820237 FORWARD LENGTH=1354 Length=1354 Score = 1229 bits (665), Expect = 0.0 Identities = 820/887 (92%), Gaps = 41/887 (5%) Strand=Plus/Plus Query 1 aaaaaaaTGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTAGAGACT-- 58 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 434 AAAAAAATGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTACAGACTCG 493 Query 59 -CGCCGTACTCCGTCGAAATTAGCGTCGACGGTGACTCCTCCGACTTGGATTCTTTGTCT 117 ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 494 CCGCCGTACTCCGTCGAAATTAGCATCGACGGTGACTCCTCCGACTGGGATTCTTTGTCT 553 Query 118 GAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAAAAGGTACATTCCTGTGGT 177 ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 554 CAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAACAGCTACATTCCGGTGGT 613 Query 178 aagaagaggagaacaaggaggaggaagagga-g--gaagaagaagaagaagaaaggtgga 234 |||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 614 AAGAAGAGGAGAACTAGGAGGAGAAAGAGGAGGAAGAAGAAGAAGAAGAAGAAAGGTGGA 673 Query 235 agagaTTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAaagaagctgaagaagaagaa 294 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 674 AGAGATTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAAAGAAGCTGAAGATGAAGAT 733 Query 295 gaagaagaagaaga--a----gatgat--t----ctgatgaagat---gaagatgaagaa 339 |||||||||||||| | |||||| | ||| |||||| ||||| |||||| Sbjct 734 GAAGAAGAAGAAGATGATTCTGATGATGATGAAGATGAAGAAGATGAAGAAGAAGAAGAA 793 Query 340 gaagaagaagaag-aG--TATTATGGTTTACCTTTGCAATTAGGTTGCTCTTGTAAAGGT 396 ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 794 GAAGAAGAAGAAGAAGAATATTATGGTTTGCCTTTGCAATTAGGTTGCTCTTGTAAAGGT 853 Query 397 GATTTGGGTGTAGCTCATAGTAAGTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACATG 456 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 854 GATTTGGGTGTTGCTCATAGTAAGTGTGCTGAGACTTGGTTTAAGATCAAAGGAAACATG 913 Query 457 ACATGTGAGATATGCGGCACAATGGCTCTAAACGTGGCTGGTGAACAATCAAATCCGGAG 516 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 914 ACATGTGAGATATGCGGCGCAATGGCTCTAAACGTGGCTGGTGAACAATCTAATCCGGAG 973 Query 517 AGCACTGCCTCTACCCACTCACAAGCAGCTGCGGCAGGACAATCTCAAACTCAGACAGAG 576 |||||||| ||||| || |||||||||||||| | |||||||||| ||||||||||||| Sbjct 974 AGCACTGCTTCTACACATTCACAAGCAGCTGC-G--GGACAATCTCTAACTCAGACAGAG 1030 Query 577 CCACGGGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 636 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 CCACGAGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 1090 Query 637 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCATCTC 696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1091 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCATCTC 1150 Query 697 TCTCTCT-T-TC------------GCCCACCCGCACGCGCTCACTCTTCTCCTGTTCTTG 742 ||||||| | || ||||||||||||| |||||||||||||||||||||| Sbjct 1151 TCTCTCTCTCTCTCTCTCTCTTTCGCCCACCCGCACGAGCTCACTCTTCTCCTGTTCTTG 1210 Query 743 AGCCGCTTGCTATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 802 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1211 AGCCGCTTGCAATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 1270 Query 803 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 849 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1271 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 1317 > AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755766-1757085 FORWARD LENGTH=1019 Length=1019 Score = 75.0 bits (40), Expect = 1e-12 Identities = 62/72 (86%), Gaps = 4/72 (6%) Strand=Plus/Plus Query 385 TCTTGTAAAGGTGATTTGGGTG-TAGCTCATAGTA-AGTGTGCTGAGACTTGGTTCAAGA 442 |||||||||| |||| | | || | ||||||| | | |||||||||||||||||||||| Sbjct 448 TCTTGTAAAGCTGATCTCGCTGCT-GCTCATA-AACACTGTGCTGAGACTTGGTTCAAGA 505 Query 443 TCAAAGGAAACA 454 |||||||||||| Sbjct 506 TCAAAGGAAACA 517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41392937128 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5