BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496029
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59010.1 | Symbols: | Protein kinase protein with tetratric... 2904 0.0
> AT5G59010.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr5:23820368-23823265 REVERSE LENGTH=1846
Length=1846
Score = 2904 bits (1572), Expect = 0.0
Identities = 1698/1760 (96%), Gaps = 3/1760 (0%)
Strand=Plus/Plus
Query 44 aaaaaaaaaaaGGTTTTTGCTTTTCGAGTTTAGCTAAGAAGAAATCTTTCTATCTTCCTT 103
|||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 88 AAAAAAAAAAGGGTTTTTGCTTTTCGGGTTTAGCTAAGAA-AAATCTTTCAATCTTCCTT 146
Query 104 AAATCTTT-GAAA-CCCAAAATGGGACCTCGTTGCTCTAAGCTCTCTCTCTGTTGGTGGC 161
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 AAATCTTTCAAAACCCCAAAATGGGACCTCGTTGCTCTAAGCTCTCTCTCTGTTGGTGGC 206
Query 162 CGACCCATCTCAAAACAACTCACAACGACGCTTCTGATCTAGATAACGGAACAGACGATT 221
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 207 CGACCCATCTCAAATCAACTCACAACGAAGCTTCTGATCTAGATAACGGAACGGACGATT 266
Query 222 TGCCGTCGTTTACAGAGTTCAGTTTCGACCAACTACGAGCTGCTACTTGTGGATTCTCTA 281
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 267 TGCCGTCGTTTACGGAGTTTAGTTTCGACCAACTACGAGCTGCTACTTGTGGATTCTCTA 326
Query 282 CGGACAGTATCGTCTCCGAACATGGTGTTAAAGCTCCTAATGTTGTGTATAAAGGCAGAC 341
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 CAGACAGTATTGTCTCCGAACATGGTGTTAAAGCTCCTAATGTTGTGTATAAAGGCAGAC 386
Query 342 TTGAAGATGACCGATGGATCGCTGTTAAACGCTTCAATAGATCCGCTTGGCCTGATACTC 401
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 387 TTGAAGATGACCGATGGATCGCTGTTAAACGATTCAATAGATCCGCTTGGCCTGATACTC 446
Query 402 GTCAATTTCTTGAAGAAGCAAAAGCTGTGGGGCAGTTGAGGAATGAGAGGTTGGCGAATT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GTCAATTTCTTGAAGAAGCAAAAGCTGTGGGGCAGTTGAGGAATGAGAGGTTGGCGAATT 506
Query 462 TGATTGGATTCTGTTGTGAAGGAGACGAGAGATTGCTCGTTGCTGAGTTTATGCCTTTTG 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 TGATTGGATTCTGTTGTGAAGGAGACGAGAGATTGCTCGTTGCTGAGTTTATGCCTTTTG 566
Query 522 AAACTCTCTCTAAGCATCTCTTCCATTGGGATAGCCAGCCAATGAAGTGGTCTATGAGGT 581
|||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 567 AAACTCTCTCGAAGCATCTCTTTCACTGGGATAGTCAGCCAATGAAGTGGTCTATGAGGT 626
Query 582 TGAGAGTGGCTTTGTATCTTGCACAAGCACTTGAGTATTGCAGCAGCAAAGGTCGCGCCT 641
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 627 TGAGAGTGGCTTTGTATCTTGCACAAGCACTTGAGTATTGTAGCAGCAAAGGTCGCGCCT 686
Query 642 TGTACCACGATCTTAATGCTTACAGGATCTTGTTTGACCAGGATGGTAACCCGAGATTAT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TGTACCACGATCTTAATGCTTACAGGATCTTGTTTGACCAGGATGGTAACCCGAGATTAT 746
Query 702 CTTGCTTCGGTCTTATGAAGAATAGTAGGGATGGGAAGAGTTACAGTACAAATTTGGCTT 761
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CTTGCTTTGGTCTTATGAAGAATAGTAGGGATGGGAAGAGTTACAGTACAAATTTGGCTT 806
Query 762 TCACACCTCCTGAATACCTAAGAACAGGGAGAGTGATTCCGGAGAGCGTGGTCTACAGCT 821
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 807 TCACACCTCCTGAATACCTAAGAACAGGGAGAGTGATTCCGGAGAGTGTGGTCTACAGCT 866
Query 822 TCGGAACGCTGTTGCTAGATCTTCTCAGTGGCAAACACATACCACCAAGCCATGCGCTTG 881
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 867 TCGGAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCATGCGCTTG 926
Query 882 ATCTGATTCGTGGCAAGAATTTCCTGATGCTGATGGACTCTTGTCTAGACGGTCATTTCT 941
||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 927 ATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGTCTAGATGGCCATTTCT 986
Query 942 CAAACGATGATGGAACCGATTTGGTTCGCTTAGCTTCCCGTTGTTTGCAGTATGAAGCTC 1001
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 987 CAAACGATGATGGAACCGATTTGGTTCGTTTAGCTTCCCGTTGTTTGCAGTATGAAGCTC 1046
Query 1002 GTGAAAGGCCAAATGTGAAATCTCTCGTGTCCTCACTGGCTCCTCTTCAGAAAGAAACTG 1061
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1047 GTGAAAGGCCAAATGTGAAATCTCTCGTGTCCTCACTCGCTCCTCTTCAGAAAGAAACTG 1106
Query 1062 ATATTCCGTCTTATGTCTTAATGGGAATTCCACATGGAGCTGCTTCTCCAAAGGAAACAA 1121
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1107 ATATTCCGTCTCATGTTTTAATGGGGATTCCACATGGAGCTGCTTCTCCAAAGGAAACAA 1166
Query 1122 CTTCGCTAACCCCTCTTGGTGACGCTTGTTCAAGACTTGATCTCACCGCGATACATGAAA 1181
||||||| |||||||||||||||||||||||| ||| ||||||||| || ||||||||||
Sbjct 1167 CTTCGCTTACCCCTCTTGGTGACGCTTGTTCACGACATGATCTCACAGCAATACATGAAA 1226
Query 1182 TTCTTGAAAAGGTGGGATACAAAGATGACGAGGGCGTAGCTAATGAGCTCTCGTTCCAAG 1241
|||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1227 TTCTCGAAAAGGTTGGATACAAAGATGACGAGGGTGTAGCAAATGAGCTCTCGTTCCAAG 1286
Query 1242 TGTGGACTGACCAGATTCAGGAGACTCTAAACTCAAAGAAACAAGGAGATGCTGCGTTCA 1301
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1287 TGTGGACCGACCAGATTCAGGAGACTCTAAACTCCAAGAAACAAGGAGATGCTGCGTTCA 1346
Query 1302 AAGGCAAAGACTTTGTCACTGCCGTTGAATGTTACACGCAGTTCATCGAAGATGGTACAA 1361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1347 AAGGCAAAGACTTTGTCACTGCTGTTGAATGTTACACGCAGTTCATCGAAGATGGCACAA 1406
Query 1362 TGGTATCGCCAACAGTTTTTGCAAGGAGGTGTTTGTGTTATCTAATGAGCAATATGCCTC 1421
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1407 TGGTATCGCCAACAGTTTTTGCAAGGAGGTGTTTGTGTTATCTGATGAGCAATATGCCTC 1466
Query 1422 AAGAGGCTCTTGGTGATGCAATGCAGGCGCAAGTAGTGTCTCCTGAATGGCCAACGGCTT 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 AAGAGGCTCTTGGTGATGCAATGCAGGCGCAAGTAGTGTCTCCTGAATGGCCAACGGCTT 1526
Query 1482 TTTATCTTCAGGCTGCTGCTCTCTTCAGCCTTGGAATGGATAAAGACGCCTGCGAAACCC 1541
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1527 TCTATCTTCAGGCCGCTGCTCTCTTCAGCCTTGGAATGGATAAAGACGCCTGTGAAACCC 1586
Query 1542 TAAAAGATGGAACTTCCTTGGAAGCCAAGAAACAGAACAACAGAAACTGAAAACTTCAAG 1601
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1587 TAAAAGATGGAACTTCCTTGGAAGCCAAGAAACATAACAACAGAAACTGAAAACTTCAAG 1646
Query 1602 TGTATAGGTTTCTTCTATATTCCGTCTTCTTCGTTTTCTGATTGGATTCTGAGAAAGCCT 1661
|||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1647 TGTATAGGTTTCTTCTCTCTTCCGCCTTCTTCGTTTTGTGATTGGATTCTGAGAAAGCCT 1706
Query 1662 CGTTGTCTTTGTTTTCTTGAAGCATTATCTTAAATTTGTGGTTTCCAATTTGAAGAGATG 1721
| |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 CATTGTCTCTGTCTTCTTTAAGCATTATCTTAAATTTGTGGTTTCCAATTTGAAGAGATG 1766
Query 1722 ATTCAAATCACATTTGAATCAAGAAAAGAAGGATCTTTCTCATTTAAGTACAAGATCCTT 1781
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1767 ATTCAAATCACATTTGAATCAAGAAAAGAAGGATCTTTCTCATTTAAGTCCAAGATCCTT 1826
Query 1782 AAATGTGATTTTTTCAAACT 1801
| ||| ||||| ||||||||
Sbjct 1827 ATATGAGATTTGTTCAAACT 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89105967375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5