BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496030
Length=2663
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59020.1 | Symbols: | Protein of unknown function (DUF3527)... 3901 0.0
> AT5G59020.1 | Symbols: | Protein of unknown function (DUF3527)
| chr5:23826975-23830437 REVERSE LENGTH=2691
Length=2691
Score = 3901 bits (2112), Expect = 0.0
Identities = 2494/2676 (93%), Gaps = 36/2676 (1%)
Strand=Plus/Plus
Query 1 CTCTGTGTGTCTTCGTCTTCTTCATCGCCGAGTGGTTGTGTCGGTTCTGCATTTTCTCTT 60
|||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 23 CTCTCTGTATCTTCGTCTTCTCCGTCGCCGAGTGGTTGTGTCGGTTCTGCATTTTCTCTT 82
Query 61 CGCTGTTTGAGAATCCAGGAAGTCATATAAGTTGGATTGATGTGAATCCAGTGGTTCTTT 120
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 83 CGCTGTTTGAGAATCCAGGAAGTCATATAAGTTAGATTGATGTGAATCCATTGGTTCTGT 142
Query 121 GACCAGCTTACTACTACAATCTATGGAAACTCCAGTGAAACAATGTCTGGGGAGTCATGA 180
||| ||| ||||||||||||||||||||||||| ||||||||| |||| | |||||||||
Sbjct 143 GACTAGC-TACTACTACAATCTATGGAAACTCCTGTGAAACAACGTCTCGAGAGTCATGA 201
Query 181 GCTTGTTAAGTATATGTCGAAGCTACCGGTTTTCTTGGAGAGAGCTGAAACCACGCCTCA 240
|||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||
Sbjct 202 GCTTGTTAAGTATATGTCCAAGTTACCGGTTTTCTTGGAGAGAGCTGAAACTACACCTCA 261
Query 241 GGAAAAGCTCTTGAGTGTTGGTGTTCTTGATTGGGGTCGTTTGGAGGAGTGGCAGCATAG 300
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 262 GGAAAAGCTCTTGAGTGTTGGTGTTCTTGATTGGGGCCGTTTGGAGAAGTGGCAGCATAG 321
Query 301 TCATAACAGGGTTTCAATGAAGACTAGATTCCCTATGGTTTCCCATA-CAGATGCTTTTT 359
||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |
Sbjct 322 TCATAACAGGGTTTCAATGAAGAGTAGATTCCCTATGGTTTCCCA-AGCAGATGCTTTGT 380
Query 360 TGGCTCCTCCGCCTAGAGACGAG---TCATCTGCTGGTCCGAGTAAAGTGCACAATCGTA 416
|||||||||||||||||| |||| |||||||||||||| ||||||||||| || ||||
Sbjct 381 TGGCTCCTCCGCCTAGAGGCGAGTCATCATCTGCTGGTCCAAGTAAAGTGCAGAACCGTA 440
Query 417 GTTTGGATTGTCGAATGAAACATCGTAGCTCACGGCATTCCAGTGTAATGTCAGATTCTG 476
||| |||| ||||| |||||||||||||||||||||| |||||||| ||| || ||||||
Sbjct 441 GTTCGGATCGTCGATTGAAACATCGTAGCTCACGGCAGTCCAGTGTGATGCCAAATTCTG 500
Query 477 TTGAAGAAACTGTAAAGGAGTGTGATGAAATCAAATGTACTCGGAGAAAGAAACACAAAG 536
| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 501 -T--------TGTAAAGGAGTGTGAAGAAATCAAATGTACTCGGAGAAAGAAACACAAAG 551
Query 537 ATCGTAGATGTTTCAGCATACCAGATGAGCAGTTTGGTCCTAA-TACTGATGCACAAGGA 595
||||||||||||||||| ||||||| |||||||||||||| || |||| |||||||||||
Sbjct 552 ATCGTAGATGTTTCAGCGTACCAGAAGAGCAGTTTGGTCC-AAGTACTAATGCACAAGGA 610
Query 596 TTAGATG-GATGTAAAGAGAAGGATCTGAAAGGGAAGATCTGCTCTAAAAATGGAACTTT 654
||||||| | ||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 611 TTAGATGTG-TGTGAGGAGAAGGATCTGAAAGGGAAGATTTGCTCTAAAAATGGAACTTT 669
Query 655 GTCACAGGGATTGAATCCAGAGGCTGGCTTGAACGTGGAGGTAAAATCAAAGGCTGATAG 714
|||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
Sbjct 670 GTCACATGGATTGAATCCTGAGGCTGGCTTGAACATGGAGGTAAAGTCAAAGGCTGAT-G 728
Query 715 -TAACAGACGTAGGAAGCGTGAAAAGAACTTGCACGAAAGAAACCGAAATGATCATGATG 773
|| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 729 TTAGCAGACATAGGAAGAGTGAAAAGAACTTGCACGAAAGAAACCGAAATGAACATGATG 788
Query 774 GAGAACTTAGTGGAAAGCAGCAGGGGGAGGCTAAGACTTGCAAGAGGAGTTCGAATAGAA 833
|||||||| || |||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 789 GAGAACTTGGTCGAAAGCAGCATGGGGAGGCTAAGACCTGCAAGAGGAGTTCAAATAGAA 848
Query 834 AAGTGCGGGTTGTTCATGGTGTTGAAGGAGATTACTGTACTCAACATTCTT-TCCCCTTG 892
|||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 849 AAGTCCGGGTTGTTCACGGTGTTGAAGGAGATTACTGTACTCAACATTCTTGT-CCCTTG 907
Query 893 CCATGTAATGCTGATGGCTGCTTGGCAAATAGTAAACTCGGCTCCACTGATACTGACCAG 952
||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||
Sbjct 908 CCATGTAATGCTGATGGCTGCTTGGCAGAGAGTAAACTTGGCTCCACTGATGCTGACCAG 967
Query 953 AAAAAGGTTTCAGTTGAACTATCTCAGTGCGTGCCACTCTTAACAAAAGCAAGGAATACA 1012
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 968 AAAAAGGTTTCAGTTGAACTATCTCAGTGCGTGTCACTCTTAACAAAAGCAAGGAATAAA 1027
Query 1013 TCTTTCAAAGGTAAAATCACAGAAGACAGAGCATCATCTTTGTTATCTGTGAAACATTGT 1072
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TCTTCCAAAGGTAAAATCTCAGAAGACAGAGCATCATCTTTGTTATCTGTGAAACATTGT 1087
Query 1073 ATGAATGAGCCTGGCCAGAGACAAAATTCAAA-ATCGCATAAAGCGTCATCTGAAAAGGG 1131
||| |||||||| ||||||||||| ||||||| | ||||||||| | |||||||||||||
Sbjct 1088 ATGTATGAGCCTTGCCAGAGACAAGATTCAAAGA-CGCATAAAGTGACATCTGAAAAGGG 1146
Query 1132 GAGAAGTATATCACCTTTTCAGCGGCCTAGCTTCAATATGGGTAAGGCCAGCAAAACTAA 1191
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1147 GAGAAGTATATCTCCTTTTCAGCGGCTTAGCTTCAATATGGGTAAGGCAAGCAAAACTAA 1206
Query 1192 CAGTGAAGGAGTTACTGTTCCCACAACCCAGCTAGACTCAATGGCTTACTCCACAAAGAT 1251
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1207 CAGTGAAGGAGGTACTGTTCCCACAACCCAGCTAGACTCAATGACTAACTCCACAAAGAT 1266
Query 1252 AGATTCACAAAATGTGGCTCTATTATCTGCTGTTGATGGCTCAGACTGCAACAAACCCAG 1311
||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||
Sbjct 1267 AGATTCACAAAATGTGGCTCTATTATCTGATGTTGACGGCTCAAATTGCAACAAACCCAG 1326
Query 1312 TGAAAAAGATACAACCACGACAAGCCATTTAAGAAGGTTGCTAGAACCACTTTTGAAGCC 1371
| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1327 TAAAAAAGATACAACCACGACAAGCCATTTAAGAAGGTTGCTAGAGCCTCTATTGAAGCC 1386
Query 1372 AAGAGCAAATCACTCTGGC-ATTCCTGTGGAGGGGCCGAGAGGTCAAGGCGTACAAAGAA 1430
||||||| | |||||||| ||| ||||||||||||||| |||||||||| | ||| ||
Sbjct 1387 AAGAGCAGCTAACTCTGGCAATT-CTGTGGAGGGGCCGAAAGGTCAAGGCCTTCAACGAC 1445
Query 1431 TAAAATTGGGTATCA-AGGGTTGCAAATCAGTAAATGTCAATGATTCAGCTCA-CGAGAA 1488
| ||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1446 TTAAATTGGGTATCACA-GGTTGCAAATCAGTAAATGTCAATGATTCAGCTCATGGA-AA 1503
Query 1489 GAAGCTAGGATCATCCATGGTCCGGGCTGTTCTGCGGGTAACCGTTAAGAACAATCAGCC 1548
||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1504 GAAGCTAGGATCATCCATGGTTCGAGCTGTTCTGCGGGTTACAGTTAAGAACAATCAGCC 1563
Query 1549 ACTCTTTACATTTGCAGTGAACAAAGAAACCGACATCATTGCGGCCACCCAAAAGAAAAT 1608
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1564 ACTCTTTACATTTGCAGTGAACAAAGAAACAGACATTATTGCGGCCACCCAAAAGAAAAT 1623
Query 1609 GGGAAGCTCGGAAGAGGGTGAATGTACTAGTGTTTATACTTTGTTCTCCATTAAAGACCA 1668
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1624 GGGAAGCTCGGAAGAGGGTGAATGTACTAGTGTTTATACTTTCTTCTCTATTAAAGACCA 1683
Query 1669 TAAGAGAAATAGTGGGTGGTTAAACCAAAGAGGCAGAGGCCAAACACATGGTCTCATCTC 1728
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1684 TAAGAGAAACAGTGGGTGGTTAAACCAAAGAGGCAGCGGCCAAACACATGGTCTCATCTC 1743
Query 1729 TAATGTTGTTGCTCAAATGCGGGTTTCAAGCTCTTTGCCATCTGGTTCCATCAGAGAGTT 1788
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1744 TAATGTTGTTGCTCAGATGCGGGTCTCGAGCTCTTTGCCATCTGGTTCCATCAGAGAGTT 1803
Query 1789 TGTTCTCTTCTCTGTAGAACTTGATCAAGAGAGCACGGAAAAGTCTGATCTGCAGTTGAA 1848
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1804 TGTTCTCTTCTCTGTAGAACTTGATCGAGAGAGCACGGAAAAGTCTGATCTGCAGTTGAA 1863
Query 1849 AAACGAGCTAGCTGCGATCATCGTGAAGATGCCAAGATGGTTTCACAGGAGGGCATC-AC 1907
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||
Sbjct 1864 AAACGAGCTAGCTGCGATCATCGTGAAGATGCCAAGATTGTTTCACAGAAGGGC-TCCAC 1922
Query 1908 TAAACACGGTTCAGGATCACAATGCACCCAGTGGAGAGCTTGAAGATCACATCAAAGACA 1967
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1923 TAAACACGGTTCAGGATCACAATGCAACTAGTGGAGAGCTTGAAGATCACATCAAAGACA 1982
Query 1968 GGTTTTTTGACCAAGACATTAGTGCTACTGTCATACTTCAAAGCGGTGTTCATAGTATGC 2027
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1983 AGTTTTTTGACCAAGACATTAGTGCTACGGTCATACTTCAAAGCGGTGTTCATAGTATGC 2042
Query 2028 CTCAGAAAGGAGGGCCATCGTCTTTGATCCAGCGATGGAGAACAGGTGGATCTTGCGATT 2087
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2043 CTCAGAAAGGAGGGCCATCGTCTTTGATACAGCGATGGAGAACAGGTGGATCTTGCGATT 2102
Query 2088 GTGGAGGTTGGGACATGGGCTGTAATCTCAGGATTCTTACAAATCAGCACAACCTCTCCT 2147
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2103 GTGGAGGTTGGGACATGGGCTGTAATCTCAGAATTCTTACAAATCAGCACAACCTCTCCT 2162
Query 2148 ACAAGAACTCTACAACTTCAAACTCACCACCCTCTTCAAACCGATTTGAGCTTTTCTTTC 2207
||||||| || |||| |||||||||||||||||||||||| |||| || || |||||||
Sbjct 2163 ACAAGAAGTCGGCAACATCAAACTCACCACCCTCTTCAAACAGATTCGAACTCTTCTTTC 2222
Query 2208 TGGGAGAACACCCCGAGGAACATCCGTTCTTGAGCTTTAAACCGATCAAAGAAGGGATAT 2267
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 TGGGAGAACAAGCGGAGGAGCATCCGTTCTTGAGCTTTAAACCGATCAAAGAAGGGATAT 2282
Query 2268 ATTCAGTGGTGTATAATTCATCCCTTTCACAACTACAAGCCTTCTCCATATGTATGGCAC 2327
||||||| | ||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2283 ATTCAGTTGCATATAATTCATCCCTTTCACAACTACAAGCGTTCTCTATATGCATGGCAC 2342
Query 2328 TTGCAGAGAGTAGCAAAATGTCAGAGATCACCCTTGAGCACAAAAGCTCTTCTGATGAAC 2387
||||||||||||| ||||||||||||| || ||||||||| |||||||||| ||||||||
Sbjct 2343 TTGCAGAGAGTAGGAAAATGTCAGAGAACATCCTTGAGCAGAAAAGCTCTTGTGATGAAC 2402
Query 2388 ATAAAGCTAGGGGAAAAACCGTGTTAGTCCCGGACCAAGATTCAAACCCTAATGGCAACA 2447
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2403 ATAAAGTTAGGGGAAAAACCGTGTTACTCCCGGACCAAGATTCAAACCCTAATGGCAACA 2462
Query 2448 CCGTCGGGTATCAACCGCCGCTCTCGCCTGTCGGGCGGGTCTGAAGTTTATATTTTTACT 2507
|||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||||
Sbjct 2463 CCGTCGGGTATCAACCGCGGTTCTCGCCTGTTGGGCGGGTCTGAAGTTTGTATTTTTACT 2522
Query 2508 TCAAACCCAAATTTTTTACTTGCAGGTATGTGGTCATATTATTAGTGTTAAGCCTAAGAG 2567
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2523 TCAAACCCAAATTTTTTACTTGCAGGTATGTGATCATAATATTAGTGTTAAGCCTAAGAT 2582
Query 2568 AGAAAAACAGTTGCAGGAAATAAGAAAGTAGCTAGAAGATATCTTTAAAGTAGTTAGTCT 2627
| ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2583 A-AAA--CAGTTGCAGGAAATAAGAAAGCAGCTAGAAGATCTCTTTAAAGTAGTTAGTCT 2639
Query 2628 AATGATCTTCCCAACTCTTAAGTGTGAATATTTTTT 2663
||||||||||||||||||||||||||||||||||||
Sbjct 2640 AATGATCTTCCCAACTCTTAAGTGTGAATATTTTTT 2675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132240061748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5