BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496033

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59230.1 | Symbols:  | transcription factor-related | chr5:2...   726    0.0  


> AT5G59230.1 | Symbols:  | transcription factor-related | chr5:23901555-23902379 
FORWARD LENGTH=561
Length=561

 Score =  726 bits (393),  Expect = 0.0
 Identities = 511/566 (90%), Gaps = 16/566 (3%)
 Strand=Plus/Plus

Query  1    ATGGTGTTATCGACTAGCGACACTAGCACCTCTTACAACTATGTCATCGATGACGTTATC  60
            ||||||||||| || ||||| || || | ||||||||||||||| |||||||||||||||
Sbjct  1    ATGGTGTTATCAACGAGCGATACGAGTAGCTCTTACAACTATGTTATCGATGACGTTATC  60

Query  61   AACAAGTCTCGATGCGAGCTCGTCTACAATGGAGAACTTGAAGAGAGTGTTCTTAGCCAG  120
            ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| 
Sbjct  61   AACAAGTCTCGATGCGATCTTGTCTACAATGGAGAACTTGATGAGAGTGTTCTTAGCCAA  120

Query  121  ATTCAATCGGTGTGGAAAACGAAGATGATACAAGCCGGAGTCATAACCGGAACAATCGAA  180
            ||||||||| ||||||||||||||||||||||||| |||| ||| | |||||||||||||
Sbjct  121  ATTCAATCGATGTGGAAAACGAAGATGATACAAGCAGGAGCCATGAGCGGAACAATCGAA  180

Query  181  ACATCTGCTG-TTGCGATTTCCGC-AC-C-TCCGATATTGCAGGCGACTCTTCAGACTCC  236
            |||||| ||| || ||||| || | || | |  |||| ||||| ||||||||||||||||
Sbjct  181  ACATCTTCTGCTT-CGATTCCCACCACACCTGTGATAGTGCAGACGACTCTTCAGACTCC  239

Query  237  GCGGGATGCAATTCCTTTACCTGAGAAGA---TGTC-CATAAAGAAAGAGTGTGACGAAT  292
            | |  ||||||||||||||||||||||||   |||| |  |||||||||| |||| | ||
Sbjct  240  G-G--ATGCAATTCCTTTACCTGAGAAGAAGATGTCTCC-AAAGAAAGAGAGTGATGGAT  295

Query  293  TTTAT-AT-T-CCTCAGCAAGATGGAGCTAGAGATGAAGCTATGGTCGATGTagatgaga  349
            ||||| || | ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  296  TTTATTATATTCCTCAGCAAGATGGAGCGAGAGATGAAGCTATTGTCGATGTAGATGAGA  355

Query  350  atgaagagcttttgaacgaggacgatgatgatgaggaagatgatatggatgatgatgatA  409
            ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  356  ATGAAGAGCCTTTGAACGAGGATGATGATGATGAGGAAGATGATATCGATGATGATGATA  415

Query  410  CGAACATTCCACATTTGGTCATGTGTCAATTTGACAAGGTGAAGCGTTGCAAGAACAAGT  469
             |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct  416  TGAACATTCAACATTTGGTCATGTGTCAATTTGATAAGGTGAAGCGTTCCAAGAACAAGT  475

Query  470  GGGAGTGCAAATTCAATGCGGGAGTTATGCAGATAAACGGCAAAAATGTTCTTTTCTCAC  529
            |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  476  GGGAGTGCAAATTCAATGCGGGTGTTATGCAAATAAACGGCAAAAATGTTCTTTTCTCAC  535

Query  530  AGGCCACAGGAGATTTCAACTTCTAG  555
            |||| |||||||||||||||||||||
Sbjct  536  AGGCAACAGGAGATTTCAACTTCTAG  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5