BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496034
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59220.1 | Symbols: HAI1 | highly ABA-induced PP2C gene 1 | ... 2372 0.0
> AT5G59220.1 | Symbols: HAI1 | highly ABA-induced PP2C gene 1
| chr5:23894404-23896619 REVERSE LENGTH=1632
Length=1632
Score = 2372 bits (1284), Expect = 0.0
Identities = 1482/1575 (94%), Gaps = 24/1575 (2%)
Strand=Plus/Plus
Query 1 AAAGCTTCCATGGCTAATCTTGTTTAAGCTTCTCTTCTTCTTCTCTGTCCTGTGTCTCGT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAAGCTTCCATGGCTAATCTTGTTTAAGCTTCTCTTCTTCTTCTCTCTCCTGTGTCTCGT 60
Query 61 TTACTAGtttttttttCTCGGGGGAGAGTGATGAAGTGTGTATGTTGAACAGTTTCGACG 120
| ||||| ||||||| |||||||||||||||| ||||||| ||||||| ||||| ||||
Sbjct 61 TCACTAG--TTTTTTT-TCGGGGGAGAGTGATGGAGTGTGTTTGTTGAATAGTTTTGACG 117
Query 121 ATCGCATGGCTGAGATTTGTTACGAGAACGAGGCTATGATga-cgaaaacgacggcgacg 179
||| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 118 ATCACATGGCTGAGATTTGTTACGAGAACGAGACTATGATGATTG-AAACGACGGCGACG 176
Query 180 gtggtgaagaagacgacgacgacaacgaggagacgagaacgGAGCTCGTCTCAAGCAGCG 239
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTGGTGAAGAAGGCAACGACGACAACGAGGAGACGAGAACGGAGCTCGTCTCAAGCAGCG 236
Query 240 AGAAGGAGGAGAATGGAGATCCGGAGGTTTAAGTTTGTTTCCGGTGAACAAG-A----T- 293
||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 237 AGAAGAAGGAGAATGGAGATCCGGAGGTTTAAGTTTGTTTCCGGCGAACAAGAACCTGTC 296
Query 294 TTCGTCGACGGTGACTTACAGAAGCGGAGGAGACGGGAATCCACCGTCGCAGCCTCCGCC 353
|||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||
Sbjct 297 TTCGTCGACGGTGACTTACAGAGGCGGAGGAGAAGAGAATCCACCGTCGCAGCCTCCACC 356
Query 354 TCCGCCGTGTTTTACGAAACGGCGAAGGAAGTTGTCGTTTTATGTGAGTCTCTGAGTTCT 413
||| |||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 357 TCCACCGTGTTTTACGAAACGGCGAAGGAAGTTGTCGTCCTATGCGAGTCTCTTAGTTCA 416
Query 414 ACGGTTGTGGCATTGCCTGATCCTGAAGCTTATCCTAAATACGGCGTCGCTTCGGTCTGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 ACGGTTGTGGCATTGCCTGATCCTGAAGCTTATCCTAAATACGGCGTCGCTTCAGTCTGT 476
Query 474 GGAAGAAGACGGGAAATGGAAGACGCCGTCGCTGTACATCCAtttttttCCCGTCAACAG 533
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 477 GGAAGAAGACGTGAAATGGAAGACGCCGTCGCTGTGCATCCGTTTTTTTCCCGTCATCAG 536
Query 534 ACGGAATATTCCTCCTCCGGATTTCACTACTGCGGCGTTTACGATGGCCATGGCTGTTCC 593
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 537 ACGGAATATTCATCCACCGGATTTCACTATTGCGGCGTTTACGATGGCCATGGCTGTTCC 596
Query 594 CATGTAGCGATGAGATGCAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCT 653
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CATGTAGCGATGAAATGTAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCT 656
Query 654 GATGCTGACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATGCTGACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTT 716
Query 714 GCGTTGAACGCCGATGGTGCGGCGAAATGCCGTTGCGAGCTTCAGCGGCCGGACTGTGAC 773
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||
Sbjct 717 GCGTTGAACGCCGATGGTGCGGCAAAATGCCGGTGCGAGCTTCAGAGGCCGGACTGCGAC 776
Query 774 GCGGTGGGATCCACCGCGGTTGTGTCTGTTCTCACGCCGGAGAAAATCATCGTGGCAAAT 833
|||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 777 GCGGTGGGATCCACTGCGGTTGTGTCTGTCCTTACGCCGGAGAAAATCATCGTGGCGAAT 836
Query 834 TGCGGTGACTCACGTGCCGTTCTGTGCCGTAACGGGAAGGCCATTGCTTTATCCTCCGAT 893
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 837 TGCGGTGACTCACGTGCCGTTCTCTGTCGTAACGGCAAAGCCATTGCTTTATCCTCCGAT 896
Query 894 CATAAGTCAGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGGGTTATC 953
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 897 CATAAGCCAGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGTGTTATC 956
Query 954 TACTGGGATGGCCCACGTGTCCTTGGAGTTCTTGCAATGTCACGAGCCATTGGAGATAAT 1013
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 957 TACTGGGATGGCCCACGTGTCCTTGGAGTACTTGCAATGTCACGAGCCATTGGAGATAAT 1016
Query 1014 TACTTGAAACCGTATGTAATCAGCAAACCGGAGGTAACCGTGACGGACCGAGTCAACGGA 1073
|||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 1017 TACTTGAAGCCGTATGTAATCAGCAGACCGGAGGTAACCGTGACGGACCGGGCCAACGGA 1076
Query 1074 GACGATTTCCTTATTCTCGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCA 1133
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GACGATTTTCTTATTCTCGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCA 1136
Query 1134 TGTAGCGTCGTTCGAATGTGTTTGAGTGGAAAAGCCAATGGTCAACTATCAACCTCACCG 1193
|||||||||||||||||||||||||| ||||||| |||||||||| ||||| | ||||||
Sbjct 1137 TGTAGCGTCGTTCGAATGTGTTTGAGAGGAAAAGTCAATGGTCAAGTATCATCATCACCG 1196
Query 1194 GAAAGGGAAATGACAGGTGTCGGCGCCGGGAATGTGGTGGTCGGAGGAGGGGATTTGCCG 1253
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1197 GAAAGGGAAATGACAGGTGTCGGCGCCGGGAATGTGGTGGTTGGAGGAGGAGATTTGCCA 1256
Query 1254 GATAAAGCGTGTGAGGAGGCGTCGCTGTTGCTGACGAGGCTTGCATTGGCTAGACAAAGT 1313
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1257 GATAAAGCGTGTGAGGAGGCGTCGCTGTTGCTGACGAGGCTTGCGTTGGCTAGACAAAGT 1316
Query 1314 TCGGACAACGTAAGTGTTGTGGTGGTTGATCTAAGACGAGACACGTAGTTGTTTCTtctc 1373
||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||
Sbjct 1317 TCGGACAACGTAAGTGTTGTGGTGGTTGATCTACGACGAGACACGTAGTTGTAT-TTGTC 1375
Query 1374 tctctctctcGTAATGTTTGtt-ttttt-GTCCTGAGTCATCGACTTTTGGGCTTTCTCT 1431
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 1376 TCTCTC----GTAATGTTTGTTGTTTTTTGTCCTGAGTCATCGACTTTTGGGCTTTTTCT 1431
Query 1432 TTTAACCTTTTTTGCTCTTCGGTGTAAGACAACGAAGGGTTTTTAATTTAGCTTGATTTT 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1432 TTTAACCTTTTTTGCTCTTCGGTGTAAGACAACGAAGGGTTTTTAATTTAGCTTGACTAT 1491
Query 1492 GGGTTATGTCA--C--TGTAGT-GAATCGCGGTTTAGATCTACAAAGATTTTCACCGGTA 1546
||||||||||| | ||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 1492 GGGTTATGTCAGTCACTGT-GTTGAATCGCGGTTTAGATCTACAAAGATTTTCACCAGTA 1550
Query 1547 GTGAAAATGGTAAAA 1561
|||||||||||||||
Sbjct 1551 GTGAAAATGGTAAAA 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77057836575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5