BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496037
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-l... 1317 0.0
> AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:23888793-23890427 REVERSE LENGTH=1635
Length=1635
Score = 1317 bits (713), Expect = 0.0
Identities = 817/868 (94%), Gaps = 3/868 (0%)
Strand=Plus/Plus
Query 855 CAGCTGTCTGTGTTTTATCTGCCTGCTCGGATTTGGGTGCGTTGGAGCTCGGGCGCTGGG 914
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| | ||
Sbjct 770 CAGCTGTCTGTGTTTTATCCGCATGCTCGGATTTAGGTGCGTTGGAGCTCGGGCGGT-GG 828
Query 915 GTACATTCGTTTGTTGAGAACCAAAAAATGGAGCTTAGTAATTTCGTAGGAAATGCTTTG 974
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 829 GTACATTCGTTTGTTGAGAACCAAAGGATGGAGCTTAGTAATTTCGTAGGTAATGCGTTG 888
Query 975 ATCAATATGTACTCCAGGTGTGGTGATATCAATGTGGCAAAGCGGGTTTTCAAGGG-AAT 1033
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||
Sbjct 889 ATCAATATGTACTCCAGGTGTGGTGATATCAATGAGGCAAGGCGGGTTTT-TAGGGTAAT 947
Query 1034 GCGAGACAAAGATGTCATTTCATATAACACGATGATTTCTGGATTAGCAATGCATGGAGC 1093
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 948 GCGAGACAAAGATGTCATATCATATAACACGATGATTTCTGGATTAGCAATGCATGGGGC 1007
Query 1094 TAGCGTTGAAGCTATCAATGTATTTCGGGATATGGTGAACAGAGGATTTAGGCCGAATCA 1153
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TAGCGTTGAAGCTATCAATGAATTTCGGGATATGGTGAACAGAGGATTTAGGCCGAATCA 1067
Query 1154 GGTGACTTTAGTTGCTCTTTTAAACGCATGTAGCCATGGAGGTTTGCTGGATATAGGACT 1213
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1068 GGTGACTTTAGTTGCTCTTTTAAACGCATGTAGCCATGGAGGTTTGTTGGATATAGGGCT 1127
Query 1214 TGAAGTTTTTAATTCTATGTGGAGAGTTTTCAGTGTTGAACCACAGATTGAGCATTATGG 1273
|||||| |||||||||||| ||||||||| | ||||||||| |||||||||||||||||
Sbjct 1128 TGAAGTATTTAATTCTATGAAGAGAGTTTTTAATGTTGAACCTCAGATTGAGCATTATGG 1187
Query 1274 ATGTATTGTCGATCTTCTTGGTCGAGTGGGGAGACTAGAGGAGGCTTACAGATTCATAGA 1333
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1188 ATGTATTGTCGATCTTCTTGGTCGAGTGGGGCGACTAGAGGAGGCTTACAGATTCATAGA 1247
Query 1334 GAATCTGCCGATAGAACCGGATCATATCATGTTAGGAGCTCTTCTGAGTGCTTGTAAGAT 1393
||| | || ||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1248 AAATATTCCAATAGAGCCGGATCATATCATGTTAGGAACTCTTTTGAGTGCTTGTAAGAT 1307
Query 1394 CCATGGAAACATGGAACTCGGTGAAAAAATCGCCAAGAGACTATTCGAATCTGAGAATTC 1453
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1308 CCATGGAAACATGGAACTCGGTGAAAAAATCGCTAAGAGACTATTCGAATCTGAGAATCC 1367
Query 1454 AGATTCTGGGACATACGTTCTCCTATCGCATATATACGCTTCATCAGGGAAATGGAAAGA 1513
|||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||
Sbjct 1368 AGATTCTGGGACATACGTTCTCTTATCAAATCTTTACGCTTCATCTGGGAAATGGAAAGA 1427
Query 1514 ATCTACAGAAATCAGAGAAAGTATGAGAGAATCAGGGATTGAGAAGGAACCAGGATGCAG 1573
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1428 ATCTACAGAAATCAGAGAGAGTATGAGAGATTCAGGGATTGAGAAGGAACCAGGATGCAG 1487
Query 1574 TACTATCGAAGTGGACAACCAGATCCATGAGTTTCATGTGGGAGATATAGCACACCCTCG 1633
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1488 TACTATCGAAGTGGACAATCAGATCCATGAGTTTCTTGTGGGAGATATAGCACACCCTCA 1547
Query 1634 TAAAGAAGCAATTTATCAGAGATTACAAGAACTGAATCGAAATCTTAGATTCAAAGAGAA 1693
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1548 TAAAGAAGCAATTTATCAGAGATTACAAGAACTGAATCGAATTCTTAGATTCAAAGAGAA 1607
Query 1694 TGAAACAGATATTATAACGGGTTTGTAG 1721
| ||| ||||||||||| |||||| |||
Sbjct 1608 TCAAATAGATATTATAATGGGTTTCTAG 1635
Score = 1070 bits (579), Expect = 0.0
Identities = 689/743 (93%), Gaps = 4/743 (1%)
Strand=Plus/Plus
Query 117 ATGATTTCCTCCTTGGCGGCGATCACCGGAGGGCCATCAACATTCCGGCGTGATCCCGAT 176
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1 ATGATTTCTTCCTTGGCAGCGATCACCGGAGGGCCTTCAACTTTCCGGCGTGATCCCGAT 60
Query 177 GCAAATACTCTCAGGCTAGCCCGCAGGAAAACATTAATCTCTTTATTACGAAACTGCAAG 236
|||| ||||||||||| | ||||||||||||||||||||| ||||||||| |||||||
Sbjct 61 TCAAACACTCTCAGGCTTTCACGCAGGAAAACATTAATCTCTGTATTACGAAGCTGCAAG 120
Query 237 AACAATGCCCAAGTTCCATCGATTCACGCCAAGATCATTAGGACCTTCCATGACCAAGAT 296
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACATTGCCCATGTTCCATCGATTCACGCCAAGATCATTAGGACCTTCCATGACCAAGAT 180
Query 297 GCTTTCGTTGTTTTCGAGCTTATCCGTGTCTGCTCCACTCTTGATTCCATCGACTACGCT 356
||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 181 GCTTTCGTTGTTTTCGAACTTATCCGTGTTTGCTCCACTCTCGATTCCGTCGACTACGCC 240
Query 357 TACGACGTGTTTCGTTATGTATCGAACCCTAATGTGTATCTGTACACCGCCATGATCGAT 416
|||||||||||| |||| ||||| ||||||||||| ||||| ||||| || |||||||||
Sbjct 241 TACGACGTGTTTAGTTACGTATCTAACCCTAATGTATATCTATACACTGCTATGATCGAT 300
Query 417 GGTTTTGTGTCATCTGGTCGCTCCGCTGATGGAGTTTCGCTGTATCATCGGATGATTCAC 476
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTTTGTGTCATCTGGTCGTTCTGCTGATGGAGTTTCGCTGTATCATCGGATGATTCAC 360
Query 477 AGTTCGGTTTTGCCTGATAATTACGTGATCACCTCCGTTTTGAAAGCTTGTGGTTTGGAT 536
| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |
Sbjct 361 AATTCGGTTTTGCCTGATAACTACGTGATCACCTCAGTTTTGAAAGCTTGTGATTTGAAG 420
Query 537 GAATGTAGAGAGATTCATTCCCAGGTTTTGAAACTTGGGTTCGGGTCTAGCAGATCGGTG 596
| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 421 GTATGTAGAGAGATTCATGCCCAGGTTTTGAAACTAGGGTTCGGGTCTAGTAGATCGGTA 480
Query 597 GGGCTAAAACTGATGGAAATCTACGGGAAATCTGGGGAATTGGCTGA-TGCTAAGAAGGT 655
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 481 GGGCTAAAAATGATGGAAATCTACGGGAAATCTGGGGAATTGG-TGAATGCTAAGAAGAT 539
Query 656 GTTCGATGAAATGCCTGACAGAGATCAGGTTGTAGCAACAGTCATGATTAATTGTTATTC 715
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 540 GTTCGATGAAATGCCTGACAGAGATCATGTTGCAGCAACGGTCATGATTAATTGTTATTC 599
Query 716 TGAATGTGGTTGT-ATTAAGGAGGCATTAGAGCTGTTTCAAGATGTTAAGATCAAAGATA 774
|||||| |||| | ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 600 TGAATGCGGTT-TCATTAAGGAGGCGTTAGAGCTTTTTCAAGATGTTAAGATTAAAGATA 658
Query 775 CGGTTTGTTGGACTGCGATGATTGATGGTTTGGTTAGAAACAGGGAGATGAACAAAGCAT 834
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 659 CGGTTTGTTGGACTGCGATGATTGATGGGTTGGTTAGAAACAAGGAGATGAACAAAGCGT 718
Query 835 TGGAGCTTTTTAGGGAAATGCAG 857
|||||||||||||||||||||||
Sbjct 719 TGGAGCTTTTTAGGGAAATGCAG 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85089923775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5