BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496037 Length=1721 Score E Sequences producing significant alignments: (Bits) Value AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-l... 1317 0.0 > AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23888793-23890427 REVERSE LENGTH=1635 Length=1635 Score = 1317 bits (713), Expect = 0.0 Identities = 817/868 (94%), Gaps = 3/868 (0%) Strand=Plus/Plus Query 855 CAGCTGTCTGTGTTTTATCTGCCTGCTCGGATTTGGGTGCGTTGGAGCTCGGGCGCTGGG 914 ||||||||||||||||||| || ||||||||||| |||||||||||||||||||| | || Sbjct 770 CAGCTGTCTGTGTTTTATCCGCATGCTCGGATTTAGGTGCGTTGGAGCTCGGGCGGT-GG 828 Query 915 GTACATTCGTTTGTTGAGAACCAAAAAATGGAGCTTAGTAATTTCGTAGGAAATGCTTTG 974 ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 829 GTACATTCGTTTGTTGAGAACCAAAGGATGGAGCTTAGTAATTTCGTAGGTAATGCGTTG 888 Query 975 ATCAATATGTACTCCAGGTGTGGTGATATCAATGTGGCAAAGCGGGTTTTCAAGGG-AAT 1033 |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||| Sbjct 889 ATCAATATGTACTCCAGGTGTGGTGATATCAATGAGGCAAGGCGGGTTTT-TAGGGTAAT 947 Query 1034 GCGAGACAAAGATGTCATTTCATATAACACGATGATTTCTGGATTAGCAATGCATGGAGC 1093 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 948 GCGAGACAAAGATGTCATATCATATAACACGATGATTTCTGGATTAGCAATGCATGGGGC 1007 Query 1094 TAGCGTTGAAGCTATCAATGTATTTCGGGATATGGTGAACAGAGGATTTAGGCCGAATCA 1153 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1008 TAGCGTTGAAGCTATCAATGAATTTCGGGATATGGTGAACAGAGGATTTAGGCCGAATCA 1067 Query 1154 GGTGACTTTAGTTGCTCTTTTAAACGCATGTAGCCATGGAGGTTTGCTGGATATAGGACT 1213 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 1068 GGTGACTTTAGTTGCTCTTTTAAACGCATGTAGCCATGGAGGTTTGTTGGATATAGGGCT 1127 Query 1214 TGAAGTTTTTAATTCTATGTGGAGAGTTTTCAGTGTTGAACCACAGATTGAGCATTATGG 1273 |||||| |||||||||||| ||||||||| | ||||||||| ||||||||||||||||| Sbjct 1128 TGAAGTATTTAATTCTATGAAGAGAGTTTTTAATGTTGAACCTCAGATTGAGCATTATGG 1187 Query 1274 ATGTATTGTCGATCTTCTTGGTCGAGTGGGGAGACTAGAGGAGGCTTACAGATTCATAGA 1333 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1188 ATGTATTGTCGATCTTCTTGGTCGAGTGGGGCGACTAGAGGAGGCTTACAGATTCATAGA 1247 Query 1334 GAATCTGCCGATAGAACCGGATCATATCATGTTAGGAGCTCTTCTGAGTGCTTGTAAGAT 1393 ||| | || ||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1248 AAATATTCCAATAGAGCCGGATCATATCATGTTAGGAACTCTTTTGAGTGCTTGTAAGAT 1307 Query 1394 CCATGGAAACATGGAACTCGGTGAAAAAATCGCCAAGAGACTATTCGAATCTGAGAATTC 1453 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1308 CCATGGAAACATGGAACTCGGTGAAAAAATCGCTAAGAGACTATTCGAATCTGAGAATCC 1367 Query 1454 AGATTCTGGGACATACGTTCTCCTATCGCATATATACGCTTCATCAGGGAAATGGAAAGA 1513 |||||||||||||||||||||| |||| || | ||||||||||| |||||||||||||| Sbjct 1368 AGATTCTGGGACATACGTTCTCTTATCAAATCTTTACGCTTCATCTGGGAAATGGAAAGA 1427 Query 1514 ATCTACAGAAATCAGAGAAAGTATGAGAGAATCAGGGATTGAGAAGGAACCAGGATGCAG 1573 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1428 ATCTACAGAAATCAGAGAGAGTATGAGAGATTCAGGGATTGAGAAGGAACCAGGATGCAG 1487 Query 1574 TACTATCGAAGTGGACAACCAGATCCATGAGTTTCATGTGGGAGATATAGCACACCCTCG 1633 |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1488 TACTATCGAAGTGGACAATCAGATCCATGAGTTTCTTGTGGGAGATATAGCACACCCTCA 1547 Query 1634 TAAAGAAGCAATTTATCAGAGATTACAAGAACTGAATCGAAATCTTAGATTCAAAGAGAA 1693 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1548 TAAAGAAGCAATTTATCAGAGATTACAAGAACTGAATCGAATTCTTAGATTCAAAGAGAA 1607 Query 1694 TGAAACAGATATTATAACGGGTTTGTAG 1721 | ||| ||||||||||| |||||| ||| Sbjct 1608 TCAAATAGATATTATAATGGGTTTCTAG 1635 Score = 1070 bits (579), Expect = 0.0 Identities = 689/743 (93%), Gaps = 4/743 (1%) Strand=Plus/Plus Query 117 ATGATTTCCTCCTTGGCGGCGATCACCGGAGGGCCATCAACATTCCGGCGTGATCCCGAT 176 |||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1 ATGATTTCTTCCTTGGCAGCGATCACCGGAGGGCCTTCAACTTTCCGGCGTGATCCCGAT 60 Query 177 GCAAATACTCTCAGGCTAGCCCGCAGGAAAACATTAATCTCTTTATTACGAAACTGCAAG 236 |||| ||||||||||| | ||||||||||||||||||||| ||||||||| ||||||| Sbjct 61 TCAAACACTCTCAGGCTTTCACGCAGGAAAACATTAATCTCTGTATTACGAAGCTGCAAG 120 Query 237 AACAATGCCCAAGTTCCATCGATTCACGCCAAGATCATTAGGACCTTCCATGACCAAGAT 296 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AACATTGCCCATGTTCCATCGATTCACGCCAAGATCATTAGGACCTTCCATGACCAAGAT 180 Query 297 GCTTTCGTTGTTTTCGAGCTTATCCGTGTCTGCTCCACTCTTGATTCCATCGACTACGCT 356 ||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||| Sbjct 181 GCTTTCGTTGTTTTCGAACTTATCCGTGTTTGCTCCACTCTCGATTCCGTCGACTACGCC 240 Query 357 TACGACGTGTTTCGTTATGTATCGAACCCTAATGTGTATCTGTACACCGCCATGATCGAT 416 |||||||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||||||| Sbjct 241 TACGACGTGTTTAGTTACGTATCTAACCCTAATGTATATCTATACACTGCTATGATCGAT 300 Query 417 GGTTTTGTGTCATCTGGTCGCTCCGCTGATGGAGTTTCGCTGTATCATCGGATGATTCAC 476 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 301 GGTTTTGTGTCATCTGGTCGTTCTGCTGATGGAGTTTCGCTGTATCATCGGATGATTCAC 360 Query 477 AGTTCGGTTTTGCCTGATAATTACGTGATCACCTCCGTTTTGAAAGCTTGTGGTTTGGAT 536 | |||||||||||||||||| |||||||||||||| |||||||||||||||| |||| | Sbjct 361 AATTCGGTTTTGCCTGATAACTACGTGATCACCTCAGTTTTGAAAGCTTGTGATTTGAAG 420 Query 537 GAATGTAGAGAGATTCATTCCCAGGTTTTGAAACTTGGGTTCGGGTCTAGCAGATCGGTG 596 | |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct 421 GTATGTAGAGAGATTCATGCCCAGGTTTTGAAACTAGGGTTCGGGTCTAGTAGATCGGTA 480 Query 597 GGGCTAAAACTGATGGAAATCTACGGGAAATCTGGGGAATTGGCTGA-TGCTAAGAAGGT 655 ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| | Sbjct 481 GGGCTAAAAATGATGGAAATCTACGGGAAATCTGGGGAATTGG-TGAATGCTAAGAAGAT 539 Query 656 GTTCGATGAAATGCCTGACAGAGATCAGGTTGTAGCAACAGTCATGATTAATTGTTATTC 715 ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| Sbjct 540 GTTCGATGAAATGCCTGACAGAGATCATGTTGCAGCAACGGTCATGATTAATTGTTATTC 599 Query 716 TGAATGTGGTTGT-ATTAAGGAGGCATTAGAGCTGTTTCAAGATGTTAAGATCAAAGATA 774 |||||| |||| | ||||||||||| |||||||| ||||||||||||||||| ||||||| Sbjct 600 TGAATGCGGTT-TCATTAAGGAGGCGTTAGAGCTTTTTCAAGATGTTAAGATTAAAGATA 658 Query 775 CGGTTTGTTGGACTGCGATGATTGATGGTTTGGTTAGAAACAGGGAGATGAACAAAGCAT 834 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | Sbjct 659 CGGTTTGTTGGACTGCGATGATTGATGGGTTGGTTAGAAACAAGGAGATGAACAAAGCGT 718 Query 835 TGGAGCTTTTTAGGGAAATGCAG 857 ||||||||||||||||||||||| Sbjct 719 TGGAGCTTTTTAGGGAAATGCAG 741 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85089923775 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5