BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496048

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1279    0.0  


> AT5G59080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to oxidative stress; 
LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; 
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G46880.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:23847405-23848557 REVERSE LENGTH=848
Length=848

 Score = 1279 bits (692),  Expect = 0.0
 Identities = 760/793 (96%), Gaps = 4/793 (1%)
 Strand=Plus/Plus

Query  1    CATCCCTTTTAGCATTATGTATAAATACCCCCATTGAGATCTTATTGTCATTACAAACAA  60
            |||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct  14   CATCCCTTTTAGCAATATGTATATATAGCCCCATTGAAATCTTATTGTCATTACAAACAA  73

Query  61   CCTACAGAACTATTCTAAGTCTCTTACGGAAGAAGAATCAAAGAGAATCAGATTAGAGTG  120
            | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  74   CTTACAGAACTATTCTAACTCTCTTACGGAAGAAGAATCAAAGAGAATCAGATTAGAGTG  133

Query  121  TGAGTTTTT-GAAGTTACTAAATGGAGGGTAAAGGACGAGTTGGCTCAtcttcttctact  179
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134  TGAGTTTTTAGAAGTTACTAAATGGAGGGTAAAGGACGAGTTGGCTCATCTTCTTCTACT  193

Query  180  tcttcttctttcACAGCCGAACTCTTCGGTTCTAAAGATCCTTCGCCACCATCTTCATCC  239
            ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  194  TCTTCTTCTTTTACAGCCGAACTCTTCGGTTCCAAAGATCCTTCGCCACCATCTTCATCC  253

Query  240  TCCGGCATCTTCTCCACCATTTTCCCTCATCCCTCCAAGGGTTCTGGAAGAGATGGTTCA  299
            |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  254  TCCGGCATCTTCTCCACCATGTTCCCTCATCCCTCCAAGGGTTCTGCAAGAGATGGTTCA  313

Query  300  AACTCCAAACATGGCTCACAAGCTCAACGTAGAGAATCTTTAAATGCGCAAGAAGACAGA  359
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  314  AACTCCAAACATGGCTCACAAGCTCAACGTAGAGAATCTTTAAATGCTCAAGAAGACAGA  373

Query  360  GTTGAGCCATGTCATCTTAGCTCTTCTCTTTACTACGGTGGTCAAGACGTATACTCTCGA  419
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct  374  GTTGAGCCATGTCATCTAAGCTCTTCTCTTTACTACGGTGGTCAAGACGTATACGCTCGA  433

Query  420  TCCACCACCAACCAAACTTACCCTGCAGTTAAAAATGAGCGTAGAAGAAGCGGAGAAGAC  479
            |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct  434  TCCACCACCAACCAAACTTACCCTCCAGTTAAAAATGACCGTAGAAGAAGCGGAGAAGAC  493

Query  480  GATGCTAATGGACAGAACTCGCAAGATGTTTCAAGAGGAAACTGGTGGCAAGGTTCTCTT  539
            || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  494  GACGCTAATGGACAGAACCCGCAAGATGTTTCAAGAGGAAACTGGTGGCAAGGTTCTCTT  553

Query  540  TATTACTAAAGAACCACTTCCTTTAGTTTCTTTGTAAATCTCTCCAGGAAC-CCATGAAG  598
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  554  TATTACTAAAGAACCACTTCCTTTAGTTTCTTTGTAAATCTCTCCAGGAACACC-TGAAG  612

Query  599  CTCAAGCCAAGTACTAATATCTACTTAACCAAGACTTTGTATAAATAAGTTTATGCAGGa  658
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  613  CTCAAGCCAAGTACTAATATCTACTTAACCAAGACTTTGTATAAATAAGTTTATGCAGAA  672

Query  659  aaaaaa-GTTATTAGGAGATTTCAAGATTAAGTAATAATATCAAAGAAATCTCCTAGTAA  717
            |||||| |||||||||||||||| || ||||||||||||||| ||||| |||||||||| 
Sbjct  673  AAAAAAAGTTATTAGGAGATTTCTAGGTTAAGTAATAATATCGAAGAATTCTCCTAGTAG  732

Query  718  TAATGTCTCAAATAGATTTGTCTAGTACTTGTTATAAGCAACTGTATCAATATTTACTCT  777
            || ||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct  733  TAGTGTCTTAAATAGATTTCTCTAGTACTTGTTATAATCAACTGTAACAATATTTACTCT  792

Query  778  GCTTTTCTCTGTC  790
            | |||||||||||
Sbjct  793  GTTTTTCTCTGTC  805



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38429122455


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5