BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496052
Length=557
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59040.1 | Symbols: COPT3 | copper transporter 3 | chr5:2383... 830 0.0
> AT5G59040.1 | Symbols: COPT3 | copper transporter 3 | chr5:23836686-23837259
FORWARD LENGTH=574
Length=574
Score = 830 bits (449), Expect = 0.0
Identities = 524/560 (94%), Gaps = 5/560 (1%)
Strand=Plus/Plus
Query 1 AAAATCTTCACATAGCACGTTAAGAATATCTCTAAACAATGAACGGCATGAGCGGATCTT 60
||||||||||||| |||||| || ||||||| || ||||||||||||||||| |||||||
Sbjct 1 AAAATCTTCACATTGCACGTAAAAAATATCTTTATACAATGAACGGCATGAGTGGATCTT 60
Query 61 CTCCGGCGGCTCCGGCACCTTCACCATCATCGTTCTTCCAACATCGCCGCCGTCACGGTG 120
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CTCCGGCGGCTCCGGCTCCTTCACCATCATCGTTCTTCCAACATCGCCACCGTCACGGTG 120
Query 121 GCATGATGCATATGACTTTCTTTTGGGGAAAAAACACGGAGGTTCTATTCGACGGCTGGC 180
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 121 GTATGATGCATATGACTTTCTTTTGGGGAAAAACCACGGAGGTTCTATTCGACGGATGGC 180
Query 181 CAGGGACCAGTCTGAAAATGTATTGGGCCTGTCTCGCCGCCATCTTTGCTCTTTCCGCTG 240
||||||||||||||||||||||||||| ||||||||||| ||| |||| | ||||||||
Sbjct 181 CAGGGACCAGTCTGAAAATGTATTGGGTCTGTCTCGCCGTCATTTTTGTTATTTCCGCTT 240
Query 241 TCTCGGAGTGGCTATCGCGGTGCGGTTTCATGAAATCCGGTCCGGCTAGCTTTGGG-GGC 299
|||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 241 TCTCCGAGTGTCTATCGCGGTGCGGTTTCATGAAATCCGGTCCGGCTAGC-TTGGGAGGC 299
Query 300 GGGCTAGTT-CAGACTTTGGTTTACACCGTGAGGGCTGGTTTGTCTTATTTGGTCATGTT 358
|||||| || |||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 300 GGGCTA-TTACAGACTGCGGTTTACACCGTGAGGGCTGCTTTGTCTTATTTGGTCATGCT 358
Query 359 GGCTGTGATGTCGTTCAATGGAGGAGTCTTCTTGGCTGCAATGGCTGGTTTTGGATTAGG 418
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 359 GGCTGTGATGTCGTTCAATGGAGGAGTCTTCGTGGCTGCGATGGCTGGTTTTGGATTAGG 418
Query 419 GTTTATGATTTTTGGAAGTAGGGCTTTTAGGAACACTAGCAGTAACAGTCACACCGAGGT 478
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 GTTTATGATTTTTGGAAGTAGGGCTTTTAGGGCCACTAGCAGTAACAGTCACACCGAGGT 478
Query 479 TCAATCACATTGTTGATTTTTGTCTT-GATCCTTTTTATTTTTCTTGTTTCCCGTTGAAA 537
|||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||
Sbjct 479 TCAATCACATTGTTGATTTTTGTCTTAGATCGTTTTTATTTTCCTTGTTTCCCGTTGAAA 538
Query 538 TAATGATTTCGAAAATAAAA 557
|||||||| ||||||||||
Sbjct 539 TAATGATTAGGAAAATAAAA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724566204
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5