BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496056
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59290.2 | Symbols: UXS3, ATUXS3 | UDP-glucuronic acid decar... 1930 0.0
AT3G46440.1 | Symbols: UXS5 | UDP-XYL synthase 5 | chr3:1708904... 1258 0.0
> AT5G59290.2 | Symbols: UXS3, ATUXS3 | UDP-glucuronic acid decarboxylase
3 | chr5:23915530-23917998 REVERSE LENGTH=1358
Length=1358
Score = 1930 bits (1045), Expect = 0.0
Identities = 1209/1284 (94%), Gaps = 28/1284 (2%)
Strand=Plus/Plus
Query 120 TCTCTGAAGCAATGGCAGCTACAAGTGAGAAACAGAACAGCACAAAGCCTCCTCCTTCTC 179
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 35 TCTCTCAAGCAATGGCAGCTACAAGTGAGAAACAGAACACCACAAAGCCTCCTCCTTCTC 94
Query 180 CTTCTCCTCTCCGCAATTCCAAGTTTTGTCAGTCCAATATGAGGATCTTGATCTCTGGAG 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 95 CTTCTCCTCTCCGCAATTCCAAGTTTTGTCAGCCCAATATGAGGATCTTGATCTCTGGAG 154
Query 240 GAGCTGGGTTCATTGGTTCTCACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGG 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GAGCTGGCTTCATTGGTTCTCACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGG 214
Query 300 TGATTGTTGCTGATAACTATTTCACTGGATCAAAAGAAAACCTCAAGAAGTGGATCGGTC 359
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 215 TGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTC 274
Query 360 ACCCGAGGTTTGAGCTTATTCGTCACGATGTTACGGAGCCTTTGTTGATCGAGGTTGATC 419
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 275 ACCCCAGGTTTGAACTTATTCGTCACGATGTTACCGAGCCTTTGTTGATCGAGGTTGATC 334
Query 420 GGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAGTACAACCCTGTTAAGA 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 335 GGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGA 394
Query 480 CAATCAAGACCAATGTGATCGGTACACTCAACATGCTAGGTCTTGCCAAGCGTGTTGGAG 539
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 395 CAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGCGTGTTGGAG 454
Query 540 CAAGAATTTTACTAACCTCAACCTCGGAAGTGTATGGAGATCCTCTCATCCACCCTCAAC 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 455 CAAGAATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCAAC 514
Query 600 CAGAGAGCTACTGGGGAAATGTCAACCCAATTGGTGTACGGAGTTGCTATGACGAAGGCA 659
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 515 CAGAGAGCTACTGGGGAAATGTCAACCCTATTGGGGTTCGGAGTTGCTATGACGAAGGCA 574
Query 660 AGCGTGTAGCCGAGACCTTGATGTTTGACTACCACAGACAACACGGCATTGAAATCCGCA 719
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 575 AGCGGGTAGCCGAAACCTTGATGTTTGACTACCACAGACAACATGGCATTGAAATCCGCA 634
Query 720 TTGCTAGAATCTTCAACACTTATGGTCCTCGAATGAACATTGATGATGGGCGTGTGGTGA 779
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 635 TTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTGTGA 694
Query 780 GCAACTTCATTGCTCAAGCACTCAGAGGTGAGGCATTGACAGTTCAGAAACCGGGGACAC 839
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 695 GCAACTTCATTGCTCAAGCACTCCGGGGTGAGGCATTGACAGTTCAGAAACCGGGGACAC 754
Query 840 AGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTTATGGAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTTATGGAAG 814
Query 900 GGGATGATACTGGCCCTATCAACATCGGTAACCCAGGTGAATTCACAATGGTGGAACTTG 959
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 815 GCAATGATACTGGCCCTATCAACATCGGTAACCCAGGTGAGTTCACAATGGTGGAACTGG 874
Query 960 CTGAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACAC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CTGAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACAC 934
Query 1020 CGGACGATCCAAGACAGAGGAAACCAGACATTAGTAAGGCCAAAGAAGTGTTGGGTTGGG 1079
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 935 CAGATGATCCAAGACAGAGGAAACCAGACATTAGTAAAGCCAAAGAAGTGTTGGGTTGGG 994
Query 1080 AGCCAAAGGTGAAGCTCAGAGAAGGACTTCCTCTCATGGAAGAAGATTTCCGACTAAGGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGCCAAAGGTGAAGCTCAGAGAAGGACTTCCTCTCATGGAAGAAGATTTCCGACTAAGGC 1054
Query 1140 TCAACGTCCC------C-AAAA--ACTA-AAA-C-C-G--G-TTTTGAGTTAACGAGT-T 1182
| |||||||| | |||| || | ||| | | | | ||||||||| ||||| |
Sbjct 1055 TTAACGTCCCAAGAAACTAAAACCACAAGAAAACACAGACGGTTTTGAGTTCACGAGAGT 1114
Query 1183 T-TCAGCTGTTGCGTTATATAATGGTGCTATTATACTACAAAGTGGTGGGTTTG-GTTT- 1239
| |||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 1115 TGTCAGCTGTTGAGTTATATGATGATGCTATTATACTACAAAGTGGTGGGTTTTTGTTTG 1174
Query 1240 --C--ATGTGTTATTCATATTGCTTTTTGTTCTTAGAGAAATAAGTTGGGAAAGGGTCTC 1295
| |||||||||||||||||||||| |||| |||| |||||||||||||| |||||||
Sbjct 1175 GTCTCATGTGTTATTCATATTGCTTTT-GTTCGTAGAAAAATAAGTTGGGAATGGGTCTC 1233
Query 1296 TTTTGTGAGGAACGGCTCTTTCTTTGTTTTTCAGTATGTTGTGTTATGGTTATTGTTT-T 1354
|| |||||||| ||||||| |||||||||||||||| ||||| |||||||||| ||| |
Sbjct 1234 CTT-GTGAGGAATGGCTCTT-CTTTGTTTTTCAGTATATTGTGGTATGGTTATTATTTGT 1291
Query 1355 GTGGTTTTAATGAAATTTGTTCAC 1378
||||||||||||||||||||||||
Sbjct 1292 GTGGTTTTAATGAAATTTGTTCAC 1315
> AT3G46440.1 | Symbols: UXS5 | UDP-XYL synthase 5 | chr3:17089045-17091875
REVERSE LENGTH=1424
Length=1424
Score = 1258 bits (681), Expect = 0.0
Identities = 926/1043 (89%), Gaps = 21/1043 (2%)
Strand=Plus/Plus
Query 129 CAATGGCAGCTACAAGTGAGAAACAGAAC-AGCACAAAGCCTCCTCCTTCTCCTTCTCCT 187
||||||| | | | ||||| ||||| ||| ||| |||||||||||||||| || ||||||
Sbjct 174 CAATGGC-G-T-CTAGTGATAAACA-AACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCT 229
Query 188 CTCCGCAATTCCAAGTTTTGTCAGTCCAATATGAGGATCTTGATCTCTGGAGGAGCTGGG 247
||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 230 CTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGA 289
Query 248 TTCATTGGTTCTCA-CTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGGTGATTGT 306
|||||||||||||| ||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 290 TTCATTGGTTCTCACCTT-GTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGT 348
Query 307 TGCTGATAACTATTTCACTGGATCAAAAGAAAACCTCAAGAAGTGGATCGGTCACCCGAG 366
||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||| || ||
Sbjct 349 TGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAG 408
Query 367 GTTTGAGCTTATTCGTCACGATGTTACGGAGCC-TTTGTTGATCGAGGTTGATCGGATTT 425
||||||||||| ||||||||||| |||||||| || |||||||||||||||| |||||
Sbjct 409 ATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTT-TTGATCGAGGTTGATCAGATTT 467
Query 426 ACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAGTACAACCCTGTTAAGACAATCA 485
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 468 ACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCA 527
Query 486 AGACCAATGTGATCGGTACACTCAACATGCTAGGTCTTGCCAAGCGTGTTGGAGCAAGAA 545
||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 528 AGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGA 587
Query 546 TTTTACTAACCTCAACCTCGGAAGTGTATGGAGATCCTCTCATCCA-CCCTCAACCAGAG 604
|||| || |||||||||||||| || ||||||||||||||||| || ||| || || |||
Sbjct 588 TTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCC-CAGCCTGAG 646
Query 605 AGCTACTGGGGAAATGTCAACCCAATTGGTG-TACGGAGTTGCTATGACGAAGGCAAGCG 663
||||| ||||||||||||||||||||||||| || |||| || ||||| |||||||||||
Sbjct 647 AGCTATTGGGGAAATGTCAACCCAATTGGTGTTA-GGAGCTGTTATGATGAAGGCAAGCG 705
Query 664 TGTAGCCGAGACCTTGATGTTTGACTACCACAGACAACACGGCATTGAAATCCGCATTGC 723
||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 706 TGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGC 765
Query 724 TAGAATCTTCAACACTTATGGTCCTCGAATGAACATTGATGATGGGCGTGTGGTGAGCAA 783
|||||||||||||||||||||||| || |||||||| |||||||| ||||| || |||||
Sbjct 766 TAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAA 825
Query 784 CTTCATTGCTCAAGCACTCAGAGGTGAGGCATTGACAGTTCAGAAACCGGGGACACAGAC 843
||||||||| ||||||||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct 826 CTTCATTGCACAAGCACTCCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGAC 885
Query 844 CCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTTATGGAAGGGGA 903
||||||||||||||||| || |||||||| ||||||||||| || || |||||||| ||
Sbjct 886 TCGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGA 945
Query 904 TGATACTGG-CCCTATCAACATCGGTAACCCAGGTGAATTCACAATGGTGGAACTTG-CT 961
||| ||||| ||| ||||||||||||||||||||||| || ||||||||||| ||| ||
Sbjct 946 TGACACTGGTCCC-ATCAACATCGGTAACCCAGGTGAGTTTACAATGGTGGAG-TTGGCT 1003
Query 962 GAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCG 1021
||||| || || ||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1004 GAGACAGTGAAAGAGCTGATTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCG 1063
Query 1022 GACGATCCAAGACAGAGGAAACCAGACATTAGTAAGGCCAAAGAAGTGTTGGGTTGGGAG 1081
|| ||||||||||||||||| |||||||| | ||||| |||||||||||||| |||||
Sbjct 1064 GATGATCCAAGACAGAGGAAGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAA 1123
Query 1082 CCAAAGGTGAAGCT-CAGAGAAGGACTTCCTCTCATGGAAGAAGATTTCCGACTAAGGCT 1140
|||||||||||||| | | ||||| ||||| || ||||||||||| ||| | ||||||||
Sbjct 1124 CCAAAGGTGAAGCTTC-GTGAAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCT 1182
Query 1141 CA-ACGTCCCCAAAAACTAAAAC 1162
| | |||| ||| |||||||||
Sbjct 1183 CGGA-GTCCACAAGAACTAAAAC 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5